AMCG00007302


Basic Information

Item Value
gene id AMCG00007302
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10361701 ~ 10372947 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007302
TTTTAACATGTGTTGTTTATTCCAAGAACGTTTGCTTTGATGGAAAGTGCTTTCGTTTTAATCTAGAAACAGGACTGTGTTTTACAGGACGTTGATTGTCTGGCGCTTTAGTCCGGTTTGTTTGATATGTAAAGTATTTAGTTCCGTTACCGCCTTACTGCAGGCGTCCTGCACCCTTTATTTCCACCTGaaaaGTCTATGGACTGCATTGCCCAAAGCCTGACAGCCCCATAGGTGAAAGATCGAGACTTGGACAAGAATATAACTGGTTCTAACGCCAACAAGCTGACCGAGCCTTTCATCCACTCTCAAAAGGAAAAGAAGCTTATACATCTTCAGTGTGGAGGAGAAAGTCCATTTGTCAGTTCAAGATGAAACCTCAGCTATCCACTTTATGCTAAAAGTAATCATAGGTCTTCGCTAAAAATGCATATATGGTGTTGAAGCCTGAGAAGAACTTGTTCAGCTTTGATCCAAAACTGTGACAAAAATTATCATGAAACTAACACGGAACAAATTATCAACCaggtaaaataaattgaaagaaCATGCAGACTCGATTGGACATGATtgcagtgattgtgtgtgtctgaaagGAGAAACGGACATTACAATGATCAGCTTGCTTCAGCTGTGCAGGGCAGGAGTAGACGTTTGAATCCAGAAGAAGAATTCACATACATCGCTGCATTTCAAAGgCTCTAACGATGAGCCAGTGTTGTGACCTGGAGAAGGACAGCATGGACAGTGCCTGCTGCGGGGCAATGCAGACAGGCTGTGCAGCGGCGGTGGACAAAGGGGACGGCGCCCTGAGCTCTACCGAGGGTGCCAACTACCACCAGAGCCTGCAAACCACAACCCACACGCAGGGCTATGACGTTGAGTTTGACCCGCCCCTGGAGAGCAAGTACGAGTGCCCCATCTGCCTGATGGCGCTGCGGGCAGCTGTACAGACACCGTGCGGGCATCGTTTCTGCCGCGGCTGCATCGAGAAATCCATCAAAGATGCCGGTCAAAAGTGTCCCGTGGACAACGAGGTCCTTCTCGAAGACCAGCTTTTCCCAGACAATTTTGCCAAGCGAGAGATCCTCTCACTCACTGTGCGCTGCCCAAACCAGGGATGTGAGCATAAAATGGAGCTACGCCATTTGGAAACTCACGTGGCACAGTGTATGTATGCTACCGTGGACTGCCCATTGTGCCATGGTCTTGTGTGGAAGAGCCAACTGCAAGAGCATCAGAACAAGGAGTGCCCCCGCCGCACCATTACCTGCCTAAATTGTGCCTCTCCAGTGGTGTATGAGGACAACAAGtacCATGAGCTGGAGTGTCCTTTGGCGAATGTGGTGTGCGATTACTGCAGTGTGGAGATGATCCGAGACCAGATGCAGCGTAACAACCTGGCCCAGCACATGCAGGAGTACACGCAGATGCACATGCGCTATATGGCTGAGTCCCTGCGCAGTCTGAGTCTGAGTGGGAGCCTGCTGCCCACTCCGCTGGCCATGCCAAGCCCCCTGGCCCTGAGGGACACTTCGGCAGGAGCAGGGGCTGGGGTAGCTTTAGCATTAGGAGTGGGGACAGTGGGTGGATCTGCTGCCCCGCCCTGTGAGTGTGAGGAGGCCCTCCAGCATCAGCGGGAGACCATCCAGCAGCTAGAGGGGCGCTTGGTGAGGCAGGACCACCAGTTGCGAGAGCTGAGCATCAAGATGGACATGCAGAACGGGCAGGTGGGTGATCTGAAGAGGCAGGTGCGCGCGCTGGAGGAGAGCGTGCGGGAGCTGGAGGCGCAGCAGTGCAGCGGCATCTACATATGGAAGGTGGAGAACTTCTCCTCCTTTCTGCACACCCAGGAGGCCGGCCAGCCCGTGGTGATCCACAGCCCTGGCTTCTACACTGGCCGCCCTGGGTACAAGCTCTGCCTGCGCCTCCACCTGCAGACACCCACCGCCCCTCGGTGCGCCAACTACATCTCCCTCTTTGTGCACACCATGCAAGGCGAGTACGACAGCCAGCTCTCCTGGCCCTTCCAAGGAACCATCCGCCTCTCCATCCTGGACCAGATGGAGAACAACCACCACGTGGAAGTCATGGAGACCAAGCCCGACCTCCTGGCTTTCCAGCGGCCCACCATTCAGCGTAACCCCAAAGGCTTCGGCTATGTGACCTTTCTGCATCTGGCCGTGCTGAAGCAGAGGGAATTTGTCCGAGATGACACGTTGCTGGTGCGTTGTGAAGTCACCCCTCGCTTTGACATGAGCTGCATCCGGAGGGAGGGGTTCCAGCCCCGGGGCCCCGAGCCCTCAGTATAACAGTGCAAAGAGGGTGAGGTACAAGATAAGTTTTCATCAAACTTTCCAAAAAAACCTCCGGAAAAAAAAAGCCCTTGTTTTCAGTATTGACATCAGACCACTGAGAAATCAGttatttcctgtgtgtgtggtAAATGCTCTGTAGTGCTCAATACTGGGATGCATCTGATATGCAAAGAAAAGACTGAATACTTTTAAACTTCACTATGGATAACTGAGGGAATCAAtgtatctaattaaaatatgtagtaGTGGCATGgtactaattaaaaacataatctttcaatttactgagacactttttttttttttttcttttttgtccgAACTCTTGAATGTTTAATCCAAAGCCTCCTGAAAAAGGTATgttctgttgtattttaatctaGTCTGCTGCTACAGGGTACCTGGAACATGAAGCCTTACCCTTGGAATTCAGGTCTGAGCCTTCATTCAGTCCAGACTCTGTAGACAGGCAGCATCCACATATAAGCctttgaacattttcatttcaaataaacattattcatgggatttcaatttaaaagacCCTGATTTATGTTCTTTCTTACCTGTGTATGAAAGGGAACTGCCAGATAGTCTTAATCTTACATGGAAGAAATTTGCTAAAATGGCATACATTTTGGATGCTTTCACAGGTGAAACAAAGTTGTGAGCTTATCTGAAATCCAAATCATCAGAGGATTCTTACACATTCTTGTCTTTTGTTTaa

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0009615 response to virus biological_process
GO:0009617 response to bacterium biological_process
GO:0048856 anatomical structure development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0009967 positive regulation of signal transduction biological_process
GO:1902531 regulation of intracellular signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K03175 TRAF6; TNF receptor-associated factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007302 True 3045 mRNA 0.49 7 10361701 10372947

Neighbor

gene id symbol gene type direction distance location
AMCG00007295 NA coding downstream 34880 10320340 ~ 10326821 (-)
AMCG00007297 NA coding downstream 42070 10313591 ~ 10319631 (-)
AMCG00007296 NA coding downstream 101594 10248277 ~ 10260107 (-)
AMCG00007294 sirt3 coding downstream 132999 10219315 ~ 10228702 (-)
AMCG00007290 NA coding downstream 175525 10161452 ~ 10186176 (-)
AMCG00007309 NA coding upstream 379291 10752238 ~ 10753836 (-)
AMCG00007312 NA coding upstream 1770969 12143916 ~ 12262705 (-)
AMCG00007314 NA coding upstream 1889886 12262833 ~ 12263877 (-)
AMCG00007313 NA coding upstream 1890947 12263894 ~ 12307056 (-)
AMCG00007315 lrrc4c,LOC106573348,LOC107670198 coding upstream 1944884 12317831 ~ 12319714 (-)
G22513 NA non-coding downstream 275318 10085760 ~ 10086383 (-)
G22505 NA non-coding downstream 317386 10033128 ~ 10044315 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 720872 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 736823 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 762547 9598692 ~ 9599154 (-)
G22619 api5 non-coding upstream 792 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 174049 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 238242 10611189 ~ 10612988 (-)
G22671 NA non-coding upstream 255401 10628348 ~ 10631934 (-)
G22687 NA non-coding upstream 281227 10654174 ~ 10655530 (-)
AMCG00007298 NA other downstream 89006 10265045 ~ 10272695 (-)
AMCG00007299 NA other downstream 114955 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 171497 10187308 ~ 10190204 (-)
AMCG00007282 NA other downstream 360536 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 898364 9457488 ~ 9463337 (-)
G22838 NA other upstream 2978570 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3572696 13945643 ~ 13946065 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other upstream 3608427 13981374 ~ 14033212 (-)
AMCG00007366 NA other upstream 5864514 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 5948050 16320997 ~ 16345580 (-)

Expression


Co-expression Network