AMCG00007305


Basic Information

Item Value
gene id AMCG00007305
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10660181 ~ 10667295 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007305
GCTGGAAGTggacttttattttacttttgctttCACTAAATGGAAGGTTGCTAGAAGATGGCAGTTTCGGGGGAGGATGTAATTTTGGTGACGTTATGGGGGTCTGGGGGATTTTGCCACTGTAGGTGTTTTCCAACCATTGGGTTAAagataaaaagattaaaaaagtattttatacaCACTCTGAAGCAGGGTGTCTGCTGATTACTTACTGTACTCACACTGGAAGTCACTACTGCTTTGTCCTACTCATTCATTTGCCAAAACAACTCTCAGCCacatgcatatgtttttttctcctcaaagatttgatttgaaaaaacagaaagaggggaaaattcatcttttttttttcctcgaCACCTTTTAAGCACATATTTGGTGcattttgttcttattattgtaAGCTGATGTATTTGTTCCTGAGTGTTTTAttcaaacctgagagaacttGGAcgaagtgaaacaaaacaaaacgaccATCCTGAGGGTTTTCATCTGAGAACTCCACCCCCAACAATCCACAGCTTCTGACAACGAGTCCTGCAGCTCCCAGTGCTTCTCCAGGTATCTCTGCTGGAACATGACCGTGTTGGAGCTGGACATGCTGACGAACAGGTTTCGGGTTATTGAGTCCCTTCTGGGGCTTGTCGGCTGCTTCTGTGTGATATATGCGGTTTGGACACCCTACTGGCTGGGTAATGGGGGTCTCTGGAATGGAGGgaatgatacacacacagacattgagTCCCTGGACCTGGATTCCACAGGAGGACAAATCTTTAAAGTGCTGGAGGCTGAGCGCGTGTTTGCAGTGCTCACATTCCTCATGGCGGTCAGCGGGGCGTCTCTCTGCATCATCTTCATCTTTTGCTGGTCCTCCAAGACCACTTGCTCCTACAGTAATGCCAGATCCCTGCTGAAGGCCGGCCAGGCTCTGTACCCCACCACCCTGCTGCTGGTCATCCTCTTTCCCACAGggtttttcttcattttgtgcTGGTCCCTCTTCACCAGACACCACAAGGATGAGATCACCAATGACATTACTCAGCTGGGCTCTTCCTATTGGCTGGGGGCTGTAGGCTGGGTCTTGCTACTGGGCATCctgcctgttgtttttgttgtggagCAGTCGGTCTGTCCCGACCCCATGGCAGAAGCGGAATCCTTGCTAAATGCCATAGTCACCTCACCCCACAAAAATGGCAAGCACTGCCATAGTGAGGGGTGGCATATGAGCTCTGTGAAGAGTGAGCTGAGCTGCAGATCACTAGCTTGATGTATCTGTTTCCCATAGAAATCATGAAGAGCTTTAAAACACTGTCGGGGGCACAGCCACAACGAGAAACATTTGACGTTTTCCTCATAAAGTGCTGGTAATTTGGTCACTTCTCAGGCAACCTTTCTTCTCTGGAAACACATGCACCTCATCCAGATATAATGAGAGAACAGTAGTCCCCTCTGACTAGTGAAGATCTTTGAAGAGGTTGCTGAGCACAGGGAAAATAGTCAAGacaaagaaaaattgaaatctTTTGGTATCAGCCACACTGTTAGGTACACACTGAGAGTGACAGTTTGTCGAACTGTCGGGACAGGTTTCTCGTGTCAACACTGCTGTATTCATTTGGAGGAAAATGCTACTTTGGAGGAGATACAAATCAGTGATTTCCCCAGACGAGGGCTTGTGACAGAGTTTAATTATttgaagtaaacaaaacaaaaatgtatacatgtaaacaTGTGGTAAACAAAGGATGCTTCCCTGTGTTAATGTAGATGCAAATcccagtacaatacagtgttaAGCAATGGAGGCATTAAGACAAGTTATTGGGTACTAATGGGATAAATAACCTGGGCTAATATTGGGTTCCCAACTGGAGCCAGATGACACTAAAACCCCTCTAAAATTAGGCGATGTCATATCTGTACACTTGGTGCCatacatctgtgaaaagtcaGTTGTGACAGATTGACACAGTACACTAACATACAGCCTTCAATTGTGTTTTAATCCTTTCAGATTGAACAGACAAAGGACCAACGCTGTAACTAAATGATTAGACTATGAtgctacatttatatttcaaacttcaaacgctttaacataaaaaatatgtagtttATAAAGAAAGTATCTAGGGAtagatatacaaataatattatatattgtaacaattgaaAGTCACCCTGTAttagggcatctgctaagaaaagtcataagaataataataggACCCTACAATActaatattaaattattcaatcCACATGCCAAGACTATAGATTATAATATgttacaaaactattttttctgttgttgttgttgttgttgttgttgttgtagtggtggtgttttgtttcaatCATGTCTGCCTAAATCAATTGAGTAAGTGATTGAGTATTGTTTACTCCTCAATTTCTAATTACTGATCTCATTTGTTTGTATAATAAACACCAATCTGGAGTAATCTCAATGGTTGTGCAAAATGGTATTTTAAACTTAATGGTGTAGCTGATGGAAAAAGGGGAGAACATTTGCCATACCAAttaaaaattgtaaattagTGTCTAGGGTGAATGGGtctgttaaggtacaatgctccagttgaagcaacccttcgggtcccagtgaatcaggcaccccagtgagcgcttc

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007305 True 2665 mRNA 0.42 4 10660181 10667295

Neighbor

gene id symbol gene type direction distance location
AMCG00007308 NA coding upstream 5192 10628350 ~ 10654989 (+)
AMCG00007304 NA coding upstream 51166 10577246 ~ 10609015 (+)
AMCG00007303 NA coding upstream 83017 10534157 ~ 10577164 (+)
AMCG00007300 LOC106562579,LOC106593862,LOC106597634 coding upstream 239270 10394165 ~ 10420911 (+)
AMCG00007301 api5,LOC104957150 coding upstream 276898 10373970 ~ 10383283 (+)
AMCG00007306 rag1 coding downstream 71750 10739045 ~ 10743675 (+)
AMCG00007310 NA coding downstream 91539 10758834 ~ 10777707 (+)
AMCG00007311 NA coding downstream 921339 11588634 ~ 11603718 (+)
AMCG00007317 NA coding downstream 2874461 13541756 ~ 13551121 (+)
AMCG00007321 mrpl21,LOC106561938 coding downstream 2955849 13623144 ~ 13624807 (+)
G22596 NA non-coding upstream 338323 10320469 ~ 10321858 (+)
G22528 NA non-coding upstream 418773 10152489 ~ 10241408 (+)
G22417 NA non-coding upstream 1015434 9642597 ~ 9644747 (+)
G22373 NA non-coding upstream 1167514 9488712 ~ 9492667 (+)
G22364 NA non-coding upstream 1263701 9396221 ~ 9396480 (+)
G22712 NA non-coding downstream 444048 11111343 ~ 11111723 (+)
G22720 NA non-coding downstream 562530 11229825 ~ 11230393 (+)
G22730 NA non-coding downstream 844858 11512153 ~ 11522358 (+)
G22738 NA non-coding downstream 873688 11540983 ~ 11541524 (+)
G22741 NA non-coding downstream 903657 11570952 ~ 11573862 (+)
AMCG00007307 clg19h11orf96 other upstream 47077 10611196 ~ 10613104 (+)
AMCG00007278 NA other upstream 694914 9936920 ~ 9965267 (+)
G22372 NA other upstream 1160453 9436524 ~ 9499728 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 1948870 8697983 ~ 8711311 (+)
AMCG00007242 NA other upstream 2208599 8431102 ~ 8451582 (+)
AMCG00007337 NA other downstream 3811378 14478673 ~ 14489692 (+)
AMCG00007352 NA other downstream 4609416 15276711 ~ 15287960 (+)
AMCG00007350 tsg101 other downstream 4699366 15366661 ~ 15379965 (+)
AMCG00007379 NA other downstream 5957095 16624390 ~ 16662700 (+)
AMCG00007417 NA other downstream 7531323 18198618 ~ 18201960 (+)

Expression


Co-expression Network