AMCG00007307 (clg19h11orf96)


Basic Information

Item Value
gene id AMCG00007307
gene name clg19h11orf96
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10611196 ~ 10613104 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007307
ATGGCAAGCAGACACGTGGAGTCAGGAGGGTACCAGACCGTGGTGCCTGCTCACCTGCTGGCAGCTATGATGGAGGAATTTCCCCAGCATCTGCCTGTGCCCAAATCCCCGGCCAGGGGCAAGAGCCGGATGCGCCGCCCCCGCCAGTCCCGCTTCAAGACCCAACCAGTGACCTTCGCTGAGATCGCTGAAGTGGAGGAGGAAGGTGTTTCGGCGCTGGAGGAAGAGCGAGCCCGGAAGTCCTTCTTGCAGTCGCTGGAAAGCCTGAGACGCAGTACTCAGAACTTGCACAGCTCCAGCCACTGCCCCAAGGGCTGGGTGGCTACGTCCGCCATGCAGGGCAGTGTGGACTCCAGCGACTCAGACTCCACGCAGTAG
>TU28420
ATCCACGGCTGCCTGCCTGAGTTCAGTGCAAaagcagagagagtgagagcagctGCAGCAGAAGCAACAGCATCAAGCCAAGCAAGCTACAACAGCCCAGTGCCTGCTGCACTAAACTGCCTTGAACAGGATCACAATCAGCGAGCCAGCAAAGGCAAGGAGAGCAGAGGAGGATCAGATTCACCTTGACACTCTGACCATctgggatttaaaaacaaaacattcactGAGACAAGAAAAGACTCTCGTTTCCTGAAGGAGAAGGTCCACAAACCCTTTGGTCTCGCCCATTGTTTCTACTGCCACCCACAGCCTCCAAGAAGTTCCGCGAGGAGCCATGGCAAGCAGACACGTGGAGTCAGGAGGGTACCAGACCGTGGTGCCTGCTCACCTGCTGGCAGCTATGATGGAGGAATTTCCCCAGCATCTGCCTGTGCCCAAATCCCCGGCCAGGGGCAAGAGCCGGATGCGCCGCCCCCGCCAGTCCCGCTTCAAGACCCAACCAGTGACCTTCGCTGAGATCGCTGAAGTGGAGGAGGAAGGTGTTTCGGCGCTGGAGGAAGAGCGAGCCCGGAAGTCCTTCTTGCAGTCGCTGGAAAGCCTGAGACGCAGTACTCAGAACTTGCACAGCTCCAGCCACTGCCCCAAGGGCTGGGTGGCTACGTCCGCCATGCAGGGCAGTGTGGACTCCAGCGACTCAGACTCCACGCAGTAGAAAAGGACCGTTTTTCCCCCACGCAGACCTCGGTGATCGCTGGGGCTGCCGCTTGCTTCATAATGAAGCCTGACTgtatttgaactttttttttaacaaatatctagaacaaatctgctcaatatacatttaagcattggtatttatttcaatatatatatatatatatgtatgtatgcatttgatgcatttaaaattgagGTTTAATGTAGGCTGTTAAAAGCTTAGGCATGCTTTACGAATCAAAGTGTAGTGATTCCTTTTGCAAACTGATGAATTGCAGTGTATTGCTGTAACACAGGGGTAAATTGCCAATGcaatctttttctttcaagGTACATATaatggagaggaaggggagtttAATTAATAGGGGGGGGTCTTTGataatatagaaaatgttttccttttttaacattGTGCCTGCGAATATCTGCTGAAATGCAAGCAGCAAGTCGGGTCAGGCAGCAGCAGTTCAGGGATGTATGCTAGTTGTTGGGAATGTTCTGCAACAGAGAATTAAAGAATCCAGAAAGTGTGATGACCGGAGACGCGCACACAATGTCTGGCTCGGAGGACTTGAGATTAATCGAGAACCATCGGACACTCATTAAGTGTGCAAAGTATGCAAGCAATGGATATGCCATTTTTATCAGACTCCTGTAAAAAGGGGGAGGGTTTACTTTGTTTAAGGGACAGAAAGTATAGTTGAATTCTCGCCAGCAGCCCTACATAAGGGAGCTGCACTTCTAAACACCGAACATTATTGGCAGAAGTCGACCACTTTGTAAGGAAACATGAGAACCTTGAtgacagatattattattaatatgattttgtATTGGAGGAAAGAGAAGTGCAAGTTTACTGTGTATGCTTGTGTTAAATGGTGTTGATATTTATTGAACTGATATGTTTTGATATGGAAATGGAATAtattctcctttctttctttgtttctaaaTCACCTGttggtaaaaaaaagaaaatattctaaactttataatgttattttacacacatGAAAGCTGGAGCTTTCCTATTTactgtaataaatatttgaaaagaaaagaaaaatcctgtttctgtgttttccctTTACATGTGTGGAGAAAATTATTCACCATGCAGCTCTGTTTACCATGTATTAGACATTAAATCCCTG

Function

NR:

description
PREDICTED: uncharacterized protein C11orf96 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007307 False 378 mRNA 0.62 1 10611533 10611910
TU28420 True 1880 TUCP 0.44 2 10611196 10613104

Neighbor

gene id symbol gene type direction distance location
AMCG00007304 NA coding upstream 2181 10577246 ~ 10609015 (+)
AMCG00007303 NA coding upstream 34032 10534157 ~ 10577164 (+)
AMCG00007300 LOC106562579,LOC106593862,LOC106597634 coding upstream 190285 10394165 ~ 10420911 (+)
AMCG00007301 api5,LOC104957150 coding upstream 227913 10373970 ~ 10383283 (+)
AMCG00007292 NA coding upstream 253591 10343702 ~ 10357605 (+)
AMCG00007308 NA coding downstream 15246 10628350 ~ 10654989 (+)
AMCG00007305 NA coding downstream 47077 10660181 ~ 10667295 (+)
AMCG00007306 rag1 coding downstream 125941 10739045 ~ 10743675 (+)
AMCG00007310 NA coding downstream 145730 10758834 ~ 10777707 (+)
AMCG00007311 NA coding downstream 975530 11588634 ~ 11603718 (+)
G22596 NA non-coding upstream 289338 10320469 ~ 10321858 (+)
G22528 NA non-coding upstream 369788 10152489 ~ 10241408 (+)
G22417 NA non-coding upstream 966449 9642597 ~ 9644747 (+)
G22373 NA non-coding upstream 1118529 9488712 ~ 9492667 (+)
G22364 NA non-coding upstream 1214716 9396221 ~ 9396480 (+)
G22652 NA non-coding downstream 13570 10626674 ~ 10685068 (+)
G22712 NA non-coding downstream 498239 11111343 ~ 11111723 (+)
G22720 NA non-coding downstream 616721 11229825 ~ 11230393 (+)
G22730 NA non-coding downstream 899049 11512153 ~ 11522358 (+)
G22738 NA non-coding downstream 927879 11540983 ~ 11541524 (+)
AMCG00007278 NA other upstream 645929 9936920 ~ 9965267 (+)
G22372 NA other upstream 1111468 9436524 ~ 9499728 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 1899885 8697983 ~ 8711311 (+)
AMCG00007242 NA other upstream 2159614 8431102 ~ 8451582 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other upstream 2214954 8367436 ~ 8396242 (+)
AMCG00007337 NA other downstream 3865569 14478673 ~ 14489692 (+)
AMCG00007352 NA other downstream 4663607 15276711 ~ 15287960 (+)
AMCG00007350 tsg101 other downstream 4753557 15366661 ~ 15379965 (+)
AMCG00007379 NA other downstream 6011286 16624390 ~ 16662700 (+)
AMCG00007417 NA other downstream 7585514 18198618 ~ 18201960 (+)

Expression


Co-expression Network