Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00007309 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 10752238 ~ 10753836 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0033151 | V(D)J recombination | biological_process |
| GO:0030183 | B cell differentiation | biological_process |
| GO:0033077 | T cell differentiation in thymus | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043325 | phosphatidylinositol-3,4-bisphosphate binding | molecular_function |
| GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding | molecular_function |
| GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0035064 | methylated histone binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0080025 | phosphatidylinositol-3,5-bisphosphate binding | molecular_function |
| id | description |
|---|---|
| K10988 | RAG2; recombination-activating protein 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00007309 | True | 1599 | mRNA | 0.52 | 1 | 10752238 | 10753836 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00007302 | NA | coding | downstream | 379291 | 10361701 ~ 10372947 (-) |
| AMCG00007295 | NA | coding | downstream | 425417 | 10320340 ~ 10326821 (-) |
| AMCG00007297 | NA | coding | downstream | 432607 | 10313591 ~ 10319631 (-) |
| AMCG00007296 | NA | coding | downstream | 492131 | 10248277 ~ 10260107 (-) |
| AMCG00007294 | sirt3 | coding | downstream | 523536 | 10219315 ~ 10228702 (-) |
| AMCG00007312 | NA | coding | upstream | 1390080 | 12143916 ~ 12262705 (-) |
| AMCG00007314 | NA | coding | upstream | 1508997 | 12262833 ~ 12263877 (-) |
| AMCG00007313 | NA | coding | upstream | 1510058 | 12263894 ~ 12307056 (-) |
| AMCG00007315 | lrrc4c,LOC106573348,LOC107670198 | coding | upstream | 1563995 | 12317831 ~ 12319714 (-) |
| AMCG00007316 | NA | coding | upstream | 2308958 | 13062794 ~ 13264962 (-) |
| G22687 | NA | non-coding | downstream | 96708 | 10654174 ~ 10655530 (-) |
| G22671 | NA | non-coding | downstream | 120304 | 10628348 ~ 10631934 (-) |
| G22680 | clg19h11orf96 | non-coding | downstream | 139250 | 10611189 ~ 10612988 (-) |
| G22660 | NA | non-coding | downstream | 173336 | 10546996 ~ 10578902 (-) |
| G22619 | api5 | non-coding | downstream | 377019 | 10373739 ~ 10375219 (-) |
| G22713 | NA | non-coding | upstream | 357509 | 11111345 ~ 11111723 (-) |
| G22725 | LOC103376870 | non-coding | upstream | 510806 | 11264642 ~ 11282409 (-) |
| G22732 | NA | non-coding | upstream | 609761 | 11363597 ~ 11412595 (-) |
| G22739 | NA | non-coding | upstream | 787146 | 11540982 ~ 11541638 (-) |
| G22744 | NA | non-coding | upstream | 842279 | 11596115 ~ 11596436 (-) |
| AMCG00007298 | NA | other | downstream | 479543 | 10265045 ~ 10272695 (-) |
| AMCG00007299 | NA | other | downstream | 505492 | 10152480 ~ 10246746 (-) |
| AMCG00007289 | bet1l,LOC107740886 | other | downstream | 562034 | 10187308 ~ 10190204 (-) |
| AMCG00007282 | NA | other | downstream | 751073 | 9960062 ~ 10001165 (-) |
| AMCG00007267 | NA | other | downstream | 1288901 | 9457488 ~ 9463337 (-) |
| G22838 | NA | other | upstream | 2597681 | 13351517 ~ 13352073 (-) |
| G22931 | LOC100846954 | other | upstream | 3191807 | 13945643 ~ 13946065 (-) |
| AMCG00007326 | pamr1,LOC107570358,LOC107710987,LOC107685072 | other | upstream | 3227538 | 13981374 ~ 14033212 (-) |
| AMCG00007366 | NA | other | upstream | 5483625 | 16237461 ~ 16314032 (-) |
| AMCG00007365 | cars,LOC107578099,LOC102789774 | other | upstream | 5567161 | 16320997 ~ 16345580 (-) |
