AMCG00007315 (lrrc4c,LOC106573348,LOC107670198)


Basic Information

Item Value
gene id AMCG00007315
gene name lrrc4c,LOC106573348,LOC107670198
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 12317831 ~ 12319714 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007315
ATGAGAGGTCGTAGGTGGAATAGGGCCCTGTCCGACCCTTTGTTTGTTCTGCTGTTGGCTCTTCAGCTGCTGGTGGTGGCTGGCTTGGTGAGAGCCCAGACCTGCCCTTCGGTGTGCTCCTGCAGTAACCAGTTCAGCAAAGTCATCTGCACCCGGCGAGGCCTGAGGGAAGTCCCTGACGGCATCTCCACCAATACGCGCTATCTCAACTTACAGGAGAATCAGATCCAGGTCATCAAGGTGGACAGCTTCAAACACTTGCGCCATTTGGAAATCTTGCAGCTGAGCAAAAACCACATCCGGAATATTGAGATCGGGGCCTTCAATGGTCTGGCCAGTCTCAACACATTGGAACTCTTTGACAACAGGCTCACCACCATCCCCAATGGGGCTTTTGAGTACCTCTCAAAACTGAAGGAGCTCTGGCTGAGGAATAACCCTATCGAGAGCATCCCTTCTTACGCCTTCAACCGGGTGCCTTCCCTGAGGAGGCTGGACCTGGGCGAGCTCAAGCGCCTCTCCTATATCTCTGAGGGGGCCTTCGAGGGCCTCAGCAACCTCCGCTACCTGAACCTGGGCATGTGCAACCTGAAGGAGATCCCCAACCTCATCCCTCTGCTCAAACTCGATGAGCTGGAGCTATCGGGGAACCAGCTCTCTGTCATCCGTCCTGGCTCCTTTAAAGGGCTCATCCACCTTCAGAAGCTGTGGATGATGCACGCGCAGATCCAGGCCATTGAGAGGAACTCCTTTGATGACTTGCAGTCGCTGGTGGAGCTCAATCTGGCCCACAACAACCTGACCCTTCTGCCCCATGACCTTTTTACTCCCCTGCACCACCTGGAGAGGGTCCATTTGCACCACAACCCCTGGAACTGTAATTGTGACATCCTGTGGCTCAGCTGGTGGCTCAAGGAGATGGTTCCTGCAAACACGAGTTGCTGTGCCCGCTGCCACTCTCCCTCCAGCCTCAAGGGGCGCTACATTGGGGAGCTTGATCAGAACTACTTCACATGCTATGCCCCAGTTATCGTGGAACCCCCTGCAGACTTGAATGTGACGGAGGGCATGGCCGCTGAGCTAAAATGCCGGGCATCCACTTCCTTGACGTCGGTCAGTTGGATCACACCCAATGGAACCATAATGACTCACGGGGCTTACAAAGTGCGGATTTCTGTCCTCAATGACGGCACGTTAAATTTCACCAACGTAACAGTACAGGACACGGGGACATACACCTGCATGGTGAGCAACTCGGCGGGCAACACGACGGCTTCTGCCACACTTAATGTGTCGGCCACCGAGAACAGCAGCTTTAGTTACTTTACCACAGTCACAGTGGAAACTATTGAGCCCGCTGTGGAGGAGGGCAGGAACTCAGAACAAAATGTGGGGCCCACACCCCCAAGCGGCTGGACGACCACGTTCACAACCACCTCGCTGTCTCCCAGGAGCACCAAGTCCACAGAGAAGACATTCACCATCCCTGTGACAGAAGTGGGAGAAGGCAGCCTGAATGGGCTGGATGAAGTAATGAAGACTACAAAGATTATCATTGGGTGCTTTGTGGCGATCACCCTTATGGCAGCCGTCATGCTCATAATTTTCTACAAGATGCGCAAGCAGCACCACAGGCAGAACCACCATGCACCAACAAGGACAATTGAGATCATCAATGTGGATGATGAGATTACAGGGGGATCTGCCCTGGAGGGCCATCTGGCCTTGCCAACAATGGAGCACGAGCATCTCAACCACTACAACTCCTATAAGACATCTTATAACCACACCACCAACACAATAAATTCCTTACACAGCTCTGCGCATGAACCTTTGCTAATTCGGGCAAACTCAAAAGACAATGTACAAGAGACccaaatttaa

Function

symbol description
lrrc4c Enables cell-cell adhesion mediator activity. Involved in regulation of axonogenesis and synaptic membrane adhesion. Located in membrane.

NR:

description
PREDICTED: leucine-rich repeat-containing protein 4C

GO: NA

KEGG:

id description
K07523 LRRC4C, NGL1; netrin-G1 ligand

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007315 True 1884 mRNA 0.53 1 12317831 12319714

Neighbor

gene id symbol gene type direction distance location
AMCG00007313 NA coding downstream 10775 12263894 ~ 12307056 (-)
AMCG00007314 NA coding downstream 53954 12262833 ~ 12263877 (-)
AMCG00007312 NA coding downstream 55126 12143916 ~ 12262705 (-)
AMCG00007309 NA coding downstream 1563995 10752238 ~ 10753836 (-)
AMCG00007302 NA coding downstream 1944884 10361701 ~ 10372947 (-)
AMCG00007316 NA coding upstream 743080 13062794 ~ 13264962 (-)
AMCG00007320 NA coding upstream 1073186 13392900 ~ 13394426 (-)
AMCG00007319 NA coding upstream 1256961 13576675 ~ 13614445 (-)
AMCG00007318 NA coding upstream 1358267 13677981 ~ 13687064 (-)
AMCG00007323 NA coding upstream 1424256 13743970 ~ 13856397 (-)
G22794 NA non-coding downstream 224355 12081746 ~ 12093476 (-)
G22785 NA non-coding downstream 410337 11907274 ~ 11907494 (-)
G22779 NA non-coding downstream 426190 11891388 ~ 11891641 (-)
G22778 NA non-coding downstream 426844 11890669 ~ 11890987 (-)
G22768 NA non-coding downstream 453671 11863915 ~ 11864160 (-)
G22819 NA non-coding upstream 673963 12993677 ~ 12993936 (-)
G22901 NA non-coding upstream 1310531 13630245 ~ 13631291 (-)
G22902 NA non-coding upstream 1326817 13646531 ~ 13649777 (-)
G22941 NA non-coding upstream 1741056 14060770 ~ 14061129 (-)
G22942 NA non-coding upstream 1742020 14061734 ~ 14062135 (-)
AMCG00007298 NA other downstream 2045136 10265045 ~ 10272695 (-)
AMCG00007299 NA other downstream 2071085 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 2127627 10187308 ~ 10190204 (-)
AMCG00007282 NA other downstream 2316666 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 2854494 9457488 ~ 9463337 (-)
G22838 NA other upstream 1031803 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 1625929 13945643 ~ 13946065 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other upstream 1661660 13981374 ~ 14033212 (-)
AMCG00007366 NA other upstream 3917747 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 4001283 16320997 ~ 16345580 (-)

Expression


Co-expression Network