AMCG00007326 (pamr1,LOC107570358,LOC107710987,LOC107685072)


Basic Information

Item Value
gene id AMCG00007326
gene name pamr1,LOC107570358,LOC107710987,LOC107685072
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 13981374 ~ 14033212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007326
ATGTGTCGGGGATGCTGTGAGTACGACCAGATCCGCTGTAAGTGCCCCAGCCAAGGGGATGTGGTCGGCTATGCTGTTCCATGCTGCCGCAATGCAGAAAATGAGTGTGATCCCTGCATTATCCACCCAGGCTGCAGTATATTTGAAAACTGTAAGCGTTGTCACAATGGGACCTGGGGCATGCAAGATGACTTCTTTGTTAAAGGAAAGTACTGCACTGAGTGTCGTAAGGGCTGGTCTGGAGGAGACTGTATGACTGTGGCCGTCCACCTCACAGCGGACACACCATTCCACCGGTGGCTGATCAGGACAGGATCGCCAGCGGTGGTCCAGATCCCCACACCAGGAGCACCAGGGAAAGAGGCTAGCTGGATCCTCCAGAGACATTACACAGAGTGCACACTGAGACCTGGGCCTTCGGCCTGGGAATTGGGTGGCATGATATCCGAGAGCCCCGGGGTCCAGTCCAACTTCAGAGCAGCCTCCTGA
>TU28752
GGATACACAGTGATCAATGAGAACTGCCCTGGTGCTGAATGGAACATCATGTGTCGGGGATGCTGTGAGTACGACCAGATCCGCTGTAAGTGCCCCAGCCAAGGGGATGTGGTCGGCTATGCTGTTCCATGCTGCCGCAATGCAGAAAATGAGTGTGATCCCTGCATTATCCACCCAGGCTGCAGTATATTTGAAAACTGTAAGCGTTGTCACAATGGGACCTGGGGCATGCAAGATGACTTCTTTGTTAAAGGAAAGTACTGCACTGAGTGTCGTAAGGGCTGGTCTGGAGGAGACTGTATGA

Function

symbol description
pamr1 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human PAMR1 (peptidase domain containing associated with muscle regeneration 1).

NR:

description
PREDICTED: uncharacterized protein LOC107570358

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007326 True 489 mRNA 0.56 5 13981374 14033164
TU28752 False 304 lncRNA 0.50 2 14032349 14033212

Neighbor

gene id symbol gene type direction distance location
AMCG00007324 NA coding downstream 40703 13939340 ~ 13940671 (-)
AMCG00007325 NA coding downstream 69526 13894885 ~ 13911848 (-)
AMCG00007323 NA coding downstream 124977 13743970 ~ 13856397 (-)
AMCG00007318 NA coding downstream 294310 13677981 ~ 13687064 (-)
AMCG00007319 NA coding downstream 366929 13576675 ~ 13614445 (-)
AMCG00007330 NA coding upstream 240848 14274060 ~ 14274434 (-)
AMCG00007331 NA coding upstream 253403 14286615 ~ 14326500 (-)
AMCG00007333 NA coding upstream 373932 14407144 ~ 14425504 (-)
AMCG00007340 NA coding upstream 902387 14935599 ~ 14937527 (-)
AMCG00007344 LOC105018338,LOC107562830,LOC107675263,LOC107707530,LOC107085412,LOC103380394,LOC101069290 coding upstream 1119216 15152428 ~ 15153708 (-)
G22902 NA non-coding downstream 331597 13646531 ~ 13649777 (-)
G22901 NA non-coding downstream 350083 13630245 ~ 13631291 (-)
G22819 NA non-coding downstream 987438 12993677 ~ 12993936 (-)
G22794 NA non-coding downstream 1887898 12081746 ~ 12093476 (-)
G22785 NA non-coding downstream 2073880 11907274 ~ 11907494 (-)
G22941 NA non-coding upstream 27558 14060770 ~ 14061129 (-)
G22942 NA non-coding upstream 28522 14061734 ~ 14062135 (-)
G22943 NA non-coding upstream 30283 14063495 ~ 14065298 (-)
G22971 NA non-coding upstream 151490 14184702 ~ 14189688 (-)
G23011 NA non-coding upstream 445384 14478596 ~ 14480199 (-)
G22931 LOC100846954 other downstream 35309 13945643 ~ 13946065 (-)
G22838 NA other downstream 629301 13351517 ~ 13352073 (-)
AMCG00007298 NA other downstream 3708679 10265045 ~ 10272695 (-)
AMCG00007299 NA other downstream 3734628 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 3791170 10187308 ~ 10190204 (-)
AMCG00007366 NA other upstream 2204249 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 2287785 16320997 ~ 16345580 (-)
AMCG00007375 NA other upstream 2436255 16469467 ~ 16621905 (-)
G23661 NA other upstream 4022258 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 4169247 18202459 ~ 18208020 (-)

Expression


Co-expression Network