AMCG00007342 (ptdss2)


Basic Information

Item Value
gene id AMCG00007342
gene name ptdss2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14977530 ~ 15016535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007342
atgtttttcttaaagtcGAGGGTACGGAGGTCGGTTGGTTGCATCCAGTTTGTCTGTGAGCATTTACAGCAAcgctttattttagaaataactTGATTATTCGGCTCGCCCCGGTTTTCAGtccagaaaggaaaataaaagaaaacaaacagaggaGCCGACGCAGGACCACAAAGGGATCTCTGCAATAGCGTGTCTCATTGCTGTCGCAAAGAAGCATGCATTTTCGCTAGCTTAACCATGTTTGTGTATGCAACACAGACATGCAACCATACCCCCCTTTTACTGTAGACACAGggattttaaaatcaaagtaaCGCGTATTTCAGCCAGTTGCAGCAGCATTGCTCGGTTCATTATTTGTAGAAGAGTTTGTCATGCCAAACAGTAGAGGGGCGCAGCGCGACCGAGTGCCTGTGGATGTGAGAGGACTTGTTTGATGCACAATTTCATAAGTAGTCGCACAACACACGTGGTTGGAGACGTCAGAGGACTGCGAATGTAGTTTAAATGTCAGCAGcacggctcggctcggctcggttTGCATGTGTGCGCTACTAATGGTCGGGACACTGCGAGTTTGAGGAGGAGATCAGATAAGTGTAAAGCTATGGTGCTCTCCTACTGGAACTAACGAGACGAGACCAACGTGACCCGGGCTGCCAGCGGGCGTGTTTCCGTGTAGTGAGACTTGCCGAGGCCCTGCGTAACGAGCAGCGTCTCCGCATTGGCCGCATTGTCGAGGACCAGCGCGCTGTGCCGTGGCTGCGGCGGCTGGCCGGTTTCAGGATGACCAAGCCCGAGAGGAAGGGCAGCGCGCCCCCTGCTCGCACTCCGTCCGCGGACGAGCAGGCAAACGGTGGCTCGGTGGAGCCGGTGCTGTCCCCGTCTTCGGCTGCCTCGGACCCGGTGAGACCCAAGTCCGCCAAGCACATCTCCAGGGAGGACATGTTCCGGAGGACCACCGAGTCGGAGGTGTTCGACGACGGAACCAACACCTTTTTCTGGAGGGCTCACACCTTGACAGTCCTGTTCATCCTGACATGTGCCCTGGGCTATGTGACGCTGTTTGAAGAGACTCCTCAGGACACGGCCTACAACACAAAGAGGGGGATAGTCGCCAGTATCTTGGTGTTCCTGTGCTTTGGAGTGACGCAGGCGAAAGATGGCCCTTTTTCCAGACCCCATCCAGCTTTCTGGAGGTTCTGgctgtgtgtcagcgtggtgtaTGAGCTCTTTCTGATTTTCATTCTGTTCCAGACCGTTCATGATGGCAGGCAGTTCATGAAGTATATTGACCCCAAGCTGGGTGTGGCTCTGCCAGAGAGGGACTATGGAGGGAACTGCCTACTCTATGACCCCGGCAACGAGGCAGACCCCTACCACAATGTCTGGgaTAAGATGGATGGCTTTGTTCCTGCACATTTCATTGGCTGGTACATAAAGACCCTGATGATCCGGGACTGGTGGATGTGCATGATCATCAGCGTAATGTTTGAGTTCCTGGAGTACAGTCTGGAGCACCAATTGCCCAACTTCAGCGAGTGCTGGTGGGACCATTGGATTATGGATGTCATCGTGTGCAATGGCTTTGGGATTTACTGTGGCATGAAGACGCTGGAGTGGCTGTCGATGAAGACATACCAGTGGCAGGGTCTGTGGAATATCCCCACCTACAAGGGGAAGATCAAAAGGATTGCTTTCCAGTTCACACCCTATAGCTGGGTGAAGTTTGAATGGAAGCCGGCCTCAAACCTGCGAAGATGGCTGGCAGTCTGCGGCATCATTTTTGTGTTTCTGTTGGCAGAACTCAACACATTCTACCTAAAGTTTGTCCTCTGGATGCCCCCAGAGCACTACCTGGTGCTGCTGCGCTTGGTCTTCTTTGTCAACGTGGGAGGAGTGGCCATGAGGGAGATCTATGACTTCATGGACGACCCGAAATTCTACAAAAAGCTGGGCCAGCAGGCCTGGTTGGTGGCCGCGATCACGGTTACCGAGTTCCTCATTGTGGTGAAGTATGACCCCAACACCATCACCTTGCCCATTCCTTTCTTCGTCATCCAGTGCTGGATCTTGGGAATCATCCTGCTTTTGACCTGGACACTATGGCGCTTCTTTATCCGCGACATCACACTGCGATATAAAGAGACGAGGCGGCGGCAGCAGGAGAGCACGGGAGAGAAGGACATGGCTGGACTCTTGAGCAATGGCAGCACGGGCAGCACAGGGCGAGGCAAGCTGAACGGCAGCGGCGAGGTGACGCGTCACAGGAGGCCCTGAGCGCTTCCACAGAGCATCGTCTCTCTAGGGGGAGG

Function

symbol description
ptdss2 Predicted to enable L-serine-phosphatidylethanolamine phosphatidyltransferase activity. Predicted to act upstream of or within phosphatidylserine biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human PTDSS2 (phosphatidylserine synthase 2).

NR:

description
PREDICTED: phosphatidylserine synthase 2

GO:

id name namespace
GO:0006659 phosphatidylserine biosynthetic process biological_process

KEGG:

id description
K08730 PTDSS2; phosphatidylserine synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007342 True 2318 mRNA 0.54 12 14977530 15016535

Neighbor

gene id symbol gene type direction distance location
AMCG00007343 NA coding upstream 5293 14945229 ~ 14972237 (+)
AMCG00007341 kcnq1,LOC106562821,LOC105889017,LOC102797067,LOC102292488 coding upstream 84383 14661678 ~ 14893147 (+)
AMCG00007338 kcnq1,LOC106562471,LOC104956027,LOC101161541 coding upstream 317469 14630762 ~ 14660061 (+)
AMCG00007339 NA coding upstream 405269 14544895 ~ 14572261 (+)
AMCG00007334 NA coding upstream 454691 14517854 ~ 14522839 (+)
AMCG00007345 NA coding downstream 149928 15166463 ~ 15172477 (+)
AMCG00007351 hras,LOC107675296,LOC103357265 coding downstream 316073 15332608 ~ 15349542 (+)
AMCG00007354 NA coding downstream 475506 15492041 ~ 15579231 (+)
AMCG00007355 LOC105029471,LOC102789834,LOC107090945,LOC106925402 coding downstream 597260 15613795 ~ 15623775 (+)
AMCG00007356 LOC108275078,LOC108439244,LOC106560719 coding downstream 625360 15641895 ~ 15667423 (+)
G22979 NA non-coding upstream 686905 14286133 ~ 14290625 (+)
G22962 NA non-coding upstream 762474 14176735 ~ 14215056 (+)
G22944 NA non-coding upstream 911886 14065371 ~ 14065644 (+)
G22940 NA non-coding upstream 912322 14064950 ~ 14065208 (+)
G22935 NA non-coding upstream 936470 14040792 ~ 14041060 (+)
G23100 NA non-coding downstream 7691 15024226 ~ 15024688 (+)
G23130 NA non-coding downstream 200641 15217176 ~ 15309751 (+)
G23154 mob2,LOC108411394 non-coding downstream 653407 15669942 ~ 15753760 (+)
G23189 NA non-coding downstream 1014229 16030764 ~ 16067082 (+)
G23263 NA non-coding downstream 1135925 16152460 ~ 16157347 (+)
AMCG00007337 NA other upstream 487838 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 4364426 10611196 ~ 10613104 (+)
AMCG00007278 NA other upstream 5012263 9936920 ~ 9965267 (+)
G22372 NA other upstream 5477802 9436524 ~ 9499728 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 6266219 8697983 ~ 8711311 (+)
AMCG00007352 NA other downstream 260176 15276711 ~ 15287960 (+)
AMCG00007350 tsg101 other downstream 350126 15366661 ~ 15379965 (+)
AMCG00007379 NA other downstream 1607855 16624390 ~ 16662700 (+)
AMCG00007417 NA other downstream 3182083 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 3190543 18207078 ~ 18208308 (+)

Expression


Co-expression Network