AMCG00007345


Basic Information

Item Value
gene id AMCG00007345
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15166463 ~ 15172477 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007345
CAGAGATCCTTtgagaaacaatatttcatcatTGTTTGGAAACACCACCTGTATGTGACACCCGGTTTCCCGACCCGACCCGACCCTCACGGAACATGCAAAGCTCCAAGCCCCAGTTCGGATCCTGGCTGATCCAGCAGGTGGACAGTGGCCAGTATCCAGGCCTGTCCTGGATCAGTAAGGACAAGTTTTGCATTCCCTGGAAGCACAATTCCAGGAAAGACTGCATCGATGAGGACTGCAAGATATTCAAGGCCTGGGCCATTGTCAGTGGCAAAATAGATGAATACCCAAATGACAAAGCCAAGTGGAAAACCAACTTCCGCTGCGCCTTACACAGCCTCAAGCATTTCCGGAAGATTCAAGACTATTCGAAAGACTCTGAAAACCCCCACAAAGTTTACCAAGTTGAAAGACATGTCCAATGGGAGCAGCCCATATCTGGAATGATGACTGTTGACTATCCCACCTATGAGACCATGATGATTGACCCTTATCTCAACTCCCAGAGTGGAATTCCAGATACTGTTCCAGAGCAATCCTATGTGGCTGtgAACCAGCCTGCAGGGAATCACCAGCACTTCCCGACAGAGTACGACCTGGAGATTACCATCTGGTACCGGAGGAAGACCGTGCTGACCACACAGGTGCACAGCCCTAAAGTGCAGCTGCACTACCACAACGAGGACCATGCACTGGGGGCCACCCAGGCAATCTGCTTCCCCGACGCCGATCAGCTCATCGACCACTTGCAGATTGATTTCACCAACCGGATCCTCAACAGCATTAAGAGGGGCCTGCTACTGGAGGTCAAGCAGACGGGTATCTATGGCACACGCCAGGACATGTGTCACGTGTATGCCACCACCTCCGACCCTGCCCTCTGCACCAACGTGGAGCCCAACAAGCTGCCCCAGAACAAGGAGGTGGAGTTGCTCAACTTTCACAAGTACATCGCAGAACTGAAGGAGTTTAAAGAAAACAAGCGGGGATCCCCAGACTACGCCATTTACCTTTGCTTCGGAGAGAAATTCCCAGACGGGAAACCAAGAGAGAAGAAACTCATTGTTGTGAAGGTGGTGCCGCTAATCTTACGACACTGTCATGAATTGGCTCAGATTCAAGGTGCTTCCTCTCTGCACAGCGACAACATCAGCCTCCAGATTTCCCAGAACAGCCTGTTTGACTTCATCAGCTCTGTAATGGACCTCCCAACCAATTTAATTTGAGGCACAGGGCTTAAATCTCTGAAAACCCATTGTTTCTACCTCCATTTCAGCTTGTCTAGGTTCTGTCTAATGCCTGTACGGATTGATTGCTTTAACCCCAGCTTTGGTGCTTGCCATTGGTTTCCTCAACGGTCTGACCACTGTATGTGCTATGGGACTACTGACTATTTCCAGTAGTACTGCACAATAAAATCACATGTCTGCATAAACCAATTTAATACTAACCTCCTGCTTCCCAGTGCATTACtattctagtttttattttatttttaattgcctgACAATTACAGCAATATTCTGGATGAGAGTAGTTTCATCATGATGTGAATATACAGTTCTACAAGCTGTTTTGGGGtttaaacattaagaaaaagcttagaataaaataaatccttcctACAACTCTGGGAACTATATGAATtttatgaatataattaattgtgttCAGTTAGATACACTGAAGAAGCTCAAACACTTAGAATATTCTATTAATGTAATGCATGAGCCATCACCcatattaaactaatttaacaaaggtttcacaaatgtttaaataaatgtaatggagTTTTGGGTAAGATTCTTTAAATTCTTCAACAGATCTTAAATCTCAAACAGGGCATAAGAGCTCAGTTGGTAGAGCACTTGTAAATATTGCAAGAGGATCATGTTCAAATACTGATTGTGCCCATCATGTTTACCAGTGACCCAATCCAGTAAGGAATAGCTTATAAAAATATCcacactgagaaaaaaaaatggctatTGAGTGGCCAACAATGCAACACTAACTTTGCGATTTAGTCCCGAAGAGGCTAATAAGAAAAAAGTATCTTCATCTCTGTCCTTGGGACCCCCTGGCGTCtggttctctctctttctttctgagCTATTAATTGCAGTGGTTTATCAAACCTTTCAATTTAAGGGGTTGTCTTTAAATCTAAAGCAGTACACAGAGAAAATGGTTTAAAAGaatcaattatatttaaaaagttgaaCTGATGGTTCAAatgtccaaaaataaataaataaataaataaataaatgta

Function

GO: NA

KEGG:

id description
K05411 IRF3; interferon regulatory factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007345 True 2281 mRNA 0.43 7 15166463 15172477

Neighbor

gene id symbol gene type direction distance location
AMCG00007342 ptdss2 coding upstream 149928 14977530 ~ 15016535 (+)
AMCG00007343 NA coding upstream 194226 14945229 ~ 14972237 (+)
AMCG00007341 kcnq1,LOC106562821,LOC105889017,LOC102797067,LOC102292488 coding upstream 273316 14661678 ~ 14893147 (+)
AMCG00007338 kcnq1,LOC106562471,LOC104956027,LOC101161541 coding upstream 506402 14630762 ~ 14660061 (+)
AMCG00007339 NA coding upstream 594202 14544895 ~ 14572261 (+)
AMCG00007351 hras,LOC107675296,LOC103357265 coding downstream 160131 15332608 ~ 15349542 (+)
AMCG00007354 NA coding downstream 319564 15492041 ~ 15579231 (+)
AMCG00007355 LOC105029471,LOC102789834,LOC107090945,LOC106925402 coding downstream 441318 15613795 ~ 15623775 (+)
AMCG00007356 LOC108275078,LOC108439244,LOC106560719 coding downstream 469418 15641895 ~ 15667423 (+)
AMCG00007357 brsk2b,LOC102314217,LOC102209371,LOC101068155,LOC107696635 coding downstream 506845 15679322 ~ 15691676 (+)
G23100 NA non-coding upstream 141775 15024226 ~ 15024688 (+)
G22979 NA non-coding upstream 875838 14286133 ~ 14290625 (+)
G22962 NA non-coding upstream 951407 14176735 ~ 14215056 (+)
G22944 NA non-coding upstream 1100819 14065371 ~ 14065644 (+)
G22940 NA non-coding upstream 1101255 14064950 ~ 14065208 (+)
G23130 NA non-coding downstream 44699 15217176 ~ 15309751 (+)
G23154 mob2,LOC108411394 non-coding downstream 497465 15669942 ~ 15753760 (+)
G23189 NA non-coding downstream 858287 16030764 ~ 16067082 (+)
G23263 NA non-coding downstream 979983 16152460 ~ 16157347 (+)
G23294 NA non-coding downstream 1120627 16293104 ~ 16296008 (+)
AMCG00007337 NA other upstream 676771 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 4553359 10611196 ~ 10613104 (+)
AMCG00007278 NA other upstream 5201196 9936920 ~ 9965267 (+)
G22372 NA other upstream 5666735 9436524 ~ 9499728 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 6455152 8697983 ~ 8711311 (+)
AMCG00007352 NA other downstream 104234 15276711 ~ 15287960 (+)
AMCG00007350 tsg101 other downstream 194184 15366661 ~ 15379965 (+)
AMCG00007379 NA other downstream 1451913 16624390 ~ 16662700 (+)
AMCG00007417 NA other downstream 3026141 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 3034601 18207078 ~ 18208308 (+)

Expression


Co-expression Network