AMCG00007348


Basic Information

Item Value
gene id AMCG00007348
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15221097 ~ 15277958 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007348
ATGCCACCTGACTCACGGCCTACACAAGTCGGGACTCGGGAGCGCATTGACAGACAGCACGGCAACCGACATTGCATCCATCGCTGGGTTGTGTTCGGTCTTGCCCATGctgaaacaaaatgtaaactccCAGCTGTCTCAATGTCTCTCAAAAACCCCAATTTCTTAATTAAGAGAGGAGTGTGCAGACAGCGCACTGAGCATAGCTACAGGGCTCGTAAGACTGCCCTGAAGTTGGGCTCTAAGACAGAGATGGGGAACAAGTTACAGTGTTTCTGCTGCGACTGTGAGGCGCACTTCCCAGACCACAGGAGCCCTGCATCGaggTACCAGTGTGAATTACCTAATGGTCAGAAGGAAAACTACCCAGCATCCGTCTCCAAGGCGACAGAGGGCGGCTCCCTTGTTCTTTCTGGCTGGACACGTTGCATCGCGGCTGAGCACTCGGGAGCAGAGGCTCAGGTGCAGGAGAGTCCGGTCAGGGCCCAACCAGTCACTCTACGCCTGCACACAACCAAGACCGTGATCGGGGCATCAGCGGGGAATCCTGTTGACCTGGTGGCAGTGTCTAGCaGGGGGGATAGACCCCCACCCCATCAACAGCCTATGTGGCCATCGAGCCACCTGAAGAGTTTTGTTTCTGATCAGAACAAGAGTCATCAAGACCGGGGGGCAACGGAGTTCATCATTGTGCGTTACAAATGTCTCGGCTGTTTCTTCACTTCTTCTGCACCCATTCTGAAAGGGATCAATCATGGCCACAACTTGCTTAAAGCAAACAACATCACTGCGGGCGATGGagagctgatcccagcaggccTGTCTGTGCACATGGAGCTGAAGGTGTGGGTGGACGGCGTGGTGCGGGTGGTGTGTGGCCTGTCGGAGCAGACATCATGCCAGGAGGTGGTCATAGCCCTGGCCCAGGCCATTGGGAAAACGGGCCGCTACGTGCTGATCCAGAAactgagggacacagagaggcagCTGCTAGCCAATGAGAGGCCCCTGGAGTCCCTGGCGAAACTGGGGCAATATGGCAACGACGTGCAGTTCATCCTCAGGAGAACCGGACCCAGTGCCAGCGACAGCCAGGCGCCAGAACGGATGCACCTCTTACCCAAGCTGCCGGAGCCCGAGCCCCCTAAACGCAGAGAGCCCAAAAAGGCCTTGACCTTTAGTCTGGGACCTACAGGGCCGGGTCAGAGCTCCCCCAGGACCAAGTTAAAGGAGTACAAACAGAGCCTGAAGGACTCGCAGGAGCACGTGCCTCCCGTGGCATCAAAGGAGGACATTTTCCGACGGGTGCTGCTGCAGCAGGAGAAGCTGCATGCCCTGGAGTCCCAGATAGAGCACCTGGAGTCTGAGATCCACGCGTGGGATCAGCCACCCAGCCGAGAGCTGCAGGACGAGCTTCTGCTCATGGAGCAGAGGGTGCGGCGCAACGGGGCAGAACTGGCCCACCAGGAGTTCTGGGAAAAGGAGCTGCAGCTGgagcaagagaaagagagggacatGCAGCACAGACTGGGAGACCTGCACAAGATGCTCGAGGACTGCAGCCAGAAGCTCCACGACTTCACGACCAAGTCCGGAGCCCTGGAGCACGAGATCCAGCAGGAGAGTGTAGAGAGGGCTCGCAAAAGCCAAAGCGCCAGCCCCACAGAGATGCTCTCCCTCATGAAGGCTGAGATACACAACCAGTACAGGCAGAGCACGGAACTGGAGGCCAACCTGAGCAACACAGAGAAAGCTGTGGCCCAAGCTGAGAGCATCCTGCAGGCCAAGAAGGAGGAGCTGGATGAGCTCAACAAGGAGCTGCGCCAGTGTAACCTACAGCAGTTCATCCAGCAGACCGGAGCCCCTGCTGCCATGATACCTCCCCACGGTGAGCTGCTGGACCAGCTCGGTGACCTCCCGCCCGAGGCCTACAGCAATGGGGGCTCATCCCTGCCCCCCCAGGAGTCCCCCCCCCGGCTGTCGGCGAAGCAGTTTCTGGGGAACCCCCGGAATCTACAGAACCCGCTAGTGGCCAGCCTGAGCCCTgaggTCGTGTCATCCAGGGAGACCTTGTGGAGATAAACAGGGCCAGCAAGCGGAGGATTTGTTCACTGATCActttatattacaatatatttaaccttattaaatatatatatttatgttttttttctctcaaccacaaaatatgtactgtattttgtcaaaatcttgtattttagttaattattccatatctgtgtatataaacattaaagATGGCTTACATGTTTTAGTAAATCTGTGTTTCGAGTTGGTTGTTGCACACAAGAGACTTAGAAAGACGTGTCTGCAGGAGAAATTGAATTAGAATATGCATTTCCACCCACGATGTACAATAGACTTATATTAATGGAGTAACATTAAAATTTACTGCAAGTATTGACCTTCTTTTAAGAACACGTTTTATAAGAAGAAACACTTCAGTTAAGCATTGAATGATGGcagattttatttgtacatgttcatttcaaaatacaatacatttgatGCATACATGAACAAGAAACACTCCTTGCATATTGTGGAGCCATTTGTATACATGCTGTTACACAGTCGGCCCTGAGAATCAATCCCCAACCTCCTCTTGACAgtattagaaatacaaataaattgggatcattttattttgaaatccatCCTCAatactgtctgtgtctgtagtgaaaatgtatatgttgcCTTAAGACCATATTTATAGCCCTAAGAACTATACACTGAATTGCTctccattaaaaacattgaacaaaGGACTCTTGCTTAATTTACATGCTCACCGTGCCCTGTGCCCTGCTGGGTTAGGCTTCGGCTTACCATGACCCTATACTGGATGTAGTGGTTGTTGGAAATGGATGGATGACTATTCTaagaatatatatctatattttaatatacatcaCTTAaggtataaataaatgatttgggCTTAAAGGTAAGACATAATGCAGAAAGAgttgaaagtaaaatgtaatttttaccTGCAGTCTTTTATGTgtgcattttacaatttaacTAGCTTAGTTAGGGGAATAATTCAAGCCATGATGGTTTCAGTAAAATTCTGCTACAGTATTTTTCCATGGcttacattttcacttcagttttatgttcatatacaACTATTTCTCATTACTGTTCTGTCTTGGTTATTctctatacactcacctaaaggattattaggaacaccatactaatactgtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007348 True 3242 mRNA 0.49 14 15221097 15277958

Neighbor

gene id symbol gene type direction distance location
AMCG00007346 phrf1 coding downstream 11079 15189288 ~ 15210018 (-)
AMCG00007347 NA coding downstream 36117 15176186 ~ 15184980 (-)
AMCG00007344 LOC105018338,LOC107562830,LOC107675263,LOC107707530,LOC107085412,LOC103380394,LOC101069290 coding downstream 67389 15152428 ~ 15153708 (-)
AMCG00007340 NA coding downstream 283570 14935599 ~ 14937527 (-)
AMCG00007333 NA coding downstream 795593 14407144 ~ 14425504 (-)
AMCG00007349 NA coding upstream 10382 15288340 ~ 15313433 (-)
AMCG00007353 LOC107707550,LOC106953705,LOC103466147,LOC101079446,LOC106515651,LOC108239988 coding upstream 99660 15377618 ~ 15385002 (-)
AMCG00007359 mob2,LOC108411394 coding upstream 472150 15750108 ~ 15756250 (-)
AMCG00007358 mob2,LOC102782240,LOC108411394,LOC106561048 coding upstream 478335 15756293 ~ 15775512 (-)
AMCG00007361 NA coding upstream 597009 15874967 ~ 15890365 (-)
G23105 NA non-coding downstream 89499 15131388 ~ 15131598 (-)
G23101 LOC101154678 non-coding downstream 196352 15024241 ~ 15024745 (-)
G23011 NA non-coding downstream 740898 14478596 ~ 14480199 (-)
G22971 NA non-coding downstream 1031409 14184702 ~ 14189688 (-)
G22943 NA non-coding downstream 1155799 14063495 ~ 14065298 (-)
G23225 LOC103376870 non-coding upstream 456667 15734625 ~ 15800952 (-)
G23250 NA non-coding upstream 790125 16068083 ~ 16069464 (-)
G23344 NA non-coding upstream 1100560 16378518 ~ 16380291 (-)
G23379 NA non-coding upstream 1382923 16660881 ~ 16662665 (-)
G23397 NA non-coding upstream 1428331 16706289 ~ 16709180 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 1187885 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 1275032 13945643 ~ 13946065 (-)
G22838 NA other downstream 1869024 13351517 ~ 13352073 (-)
AMCG00007298 NA other downstream 4948402 10265045 ~ 10272695 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 5030893 10187308 ~ 10190204 (-)
AMCG00007366 NA other upstream 959503 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 1043039 16320997 ~ 16345580 (-)
AMCG00007375 NA other upstream 1191509 16469467 ~ 16621905 (-)
G23661 NA other upstream 2777512 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 2924501 18202459 ~ 18208020 (-)

Expression


Co-expression Network