AMCG00007350 (tsg101)


Basic Information

Item Value
gene id AMCG00007350
gene name tsg101
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15366661 ~ 15379965 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007350
GGCGGGACTGCAGAGGAGCACAGCCgcagttttatttgtaaataggTCTGGAAGTCGGGAGGAGAGATTGAATCCTTACACATAACCCCCCGTAAGAATTACTTTTATATTCGTATTATATCGACACCACTGCACTTGCCTGGGGAAAAGACTGACTGAGCGGTTGGGGCCCTAAAATTAACTTAACTGCAGCTGAAGAAAGCATTATCAactacatcatcatcatcatcatcatcttcttcttcttcttcttctccctgGCGCAAGACTTCCCCATCTGTAGCCATGGCTGTTGTCGTTGAGAGCAGTCTGAAAAAAATGCTCTCCAAAcaatacaaatacaggGACTTGACCGTCCGGGAAATCACCAATGTCATCTCCCAGTACAAGGACCTGAAGCCTGTAATGGATGCTTATGTGTTCAATGATGGCTCTACCAGAGATCTCATGAGTCTCACAGGAACCGTGCCAGTTAGCTACAGAGGAAATGTCTACAACATCCCAGTGTGCCTGTGGCTCCTGGACACCTACCCTTATAACCCTCCTATCTGCTTTGTGAAGCCCACCAGCGCAATGATGATCAAAACCGGGAAACACATCGACGCCAATGGCAAGATCTATCTCCCCTACCTACATGAATGGAAACACCCCCAGTCAGACCTGTACGGTCTGATCCAGGTGATGATCGTGGTGTTTGGAGAGGAGCCCCCTGTGTTTTCTCGACCCACAACACAGACCTCCTACCCATACCAGGCCACAGGTCCACCTAACCCTTCCTACATGCCTGGTATGCCAGCAGGGTCTCCATACGGCTCCAGTCATTCTACTAACCCCAGCGGATACCCCAACTACCAGTACCCCAGTGGAAACTCATACCCTCCAGCGGGCAGCACTCCACATTACAATGCCCAGCCACCAGTCACTACTGTTGGTCCCAGCCGGGATGGTACCATTGGGGAGGACACCATCCGTGCCTCCCTCATCTCGGCCGTGAGCGACAAGCTGCGCTGGAGGATGAAGGAAGAGATGGACCGGGCGCAGGCTGAGCTGGATGCCCTGAAGCGCACTGAGGAGGACCTGAAGAAAGGCCACCAGAAGCTGGAGGAGATGGTCTCACGCCTGGACCAAGAAGTGGCGGATGTCGATCGCAACATAGACCTGTTGAAGAAAAAGGACGAGGAACTGAGCGCCGCCCTGGAGAAGATGGAGAGCCAGTCAGAAAACAACGACATCGATGACGTCATCGTGCCCACGGCGCCCCTGTACAAACAGATCCTGAACCTTTACGCCGAGGAGAACGCCATCGAAGACACGATCTTCTACCTGGGGGAGGCTCTGCGGCGGGGTGTCATCGATCTGGAGGTCTTCCTCAAGCATGTGCGCTTGCTGTCTCGCAAACAGTTCCAGCTCAGAGCGCTGATGCAGAAAGCTAGGAAGACTGCCGGCCTCAGCGACCTCTACTGACCTCTGCCGACCTCCGCTGACGTTGACTCTACAATGATGCACACCAATACTCTTTTGAAGTAGCCTACaaaatccccccctccccccatacTTATGGTTATTGGTCTCTTTCCCTGTCCTCTCAAATAAGATCAGATCAAATGTCTGCAGCAGCCCCCTCCTCCTTGTTTTCTCTGCATATTGACCTGCCTAGATTGTGTAGCATTCTCTCCATCACGTTTTAGTTTCCATTCTGTCTCCCCAATAGGGCAAACACTAAGGAGTAAACTGCAGTTAACAAACTGCAGCATTCTGCATAATGCATGAAATGAAAGCTTTATTTCTTCACTGCACAGAAGAGGCTGTGCGAGCCATTTCAAGGAGaccaaattaatacattaccgAAAGAAGTGGGCCGAGAGACAAAGTACGAGATGAGGCTGTTAGCAGTGTATTTCATAGGGTGTAGAGCAGTGTGGTCCTTCTGGATCCTGAGCCATTCCTCCCACAGTCCGGGGCAGAGCCGTATGTCAGCACCTGCAGTCTGTACTGCTGCTCTCCCCATAACACTTTGCAACAGGGTGCATTGTTGTGATGGTAGATACGTGGGCACACACCATGAAATCCATTAAGCTGTGGCACAAGCCTGTTCTCCAAAAATATCACAGTTCTGATTGTGCCTTTCACCTGCGTCTGCGTAGCACATTACCTGAGGGACACTTCATTACTGGTGCAGGAAATCTTGTCCTGATCATACAGGTTTTATAGTATTTGTGTACATCTATATTTCCACAGCGCATGGATTGGGTGCCAGGATGCAAATATTCTCATGAAGACAACAGCATCATGATAAATTGACAAGCAGGTAATTTCAAAGCCTGCAGGTTCCCAGACTAGGACAAGGTCACTTAGTATCTTGCAGAAGACACATAACCTTTGGAACAGACTTTGTAGTGTTATCTGTATTGAATTACTAGTTCTTCCCATGGGTGAGATGGATGGACAGTTGTACATTGTATTCCCTCTCgttctgtgttttcctgtttatttcatcCTTTGGTCTGGGATTCTGTGTTCTGAGCACCCATGCTAGTATTATACGTTTGCACCCTGGTTTTAAGGACTTTCCTCCGTTCTCTCATGCGGACTCCTGGcagacttttatttatatatatgtgtgattaTTTTCCATCAACCCTCCTGATCATGACAACTTCCCCTGGTGGTCTGACAATACTTATGCATTTTGATAGATTAAtctatttttcccccctctttgcGAGCAACAGTGTGTACTGttcctccattttttttttccccatcttcagatgatttataataaacatattattgCACATCagctggaaaatatatttatagaaaatcaAAGTATAGAAACTTTGGTCTTAAAAAcatctgatatatatatacacacatgcatgtatagtctttttgtttgtttgttgctgttcTATTTAATTTCAATCCCTTTTTCAGCCCCAGCCTTTATGCAATTCATTTCTGATTCTTTCAAAATCttggtggggaaaaaataaaaagctcacATTTTGCTGGGCATCTAAGCCTGATTGTTATAGAAAAACATGAAGATATCAAATACACCTTGCTGAAGGAGAAGTTATATCAAGTGAAAATGGTAgatagtttttattgttttttactttcTAATTAAACTTAGATTTTACTAAATGCACTTTGATTGACATGTAAACTTGAGCATTGGTGGTATGGGTATtttgtttagaaataaaaaataaattgcatttccagttGGTTTGATTCTTGTTTTAATGAACATCACACTGCAGGAAGTCTGGTATTGCAGGTTCAAGATAGAGCCTTGAGctgaaatgttaataaaataaatatgacaatttAAGTAAGTCGTATGggacaatcaaacaaatactaGGTAAATATAGAAGTGAAAAATATACACTTATGGATCGGTGCAAATAGACATGTTAAACGCttgcattaaaacacatctttaaaATGGGATCTGATGGTAGTACCATTCTGTAGCTTTCCAATGTGTTGTCCTGTTATTCTGTATTGGAACCTGACTAGCCCACACAAATACATGACTAACCTGaattgcactttaaaatgtaaaaatacatatcgCAGATCTTAAGGACCTTCTGTGATTGCGCCAaagtccatccatccatccatcttcaaaatcgcttatcctggtgagggtcgcggggaagccggagccgatcccggcaggccttggggcgcaaggcaggaatacacccaggacgggacgatTGCACCAAAGTGTAATTTACAAAGCAGTGTTCATACCAGAAATCATCTTATTGAGATGTTAGATACTCCATTTGAATGGCAGTATATTTTGTCTCTAAGGTACTCATTGGCTGGAGAGATGTTTtacaaggatttatttttatgaaactcTGGTACCAAGACCCAGATGTGGTAAGCATTTATCCTTCATTGCAATTCTAATCGAATCTTTTTCAAATCAGAAGGTTGGCACTAAAACTTATTCTGTTGCATGCGATGGTAAAGTTTTAATCAGATCTTAAaacaggggtctccaaccctggtcctggagtgcccctatccagcaggttttggaggtcacACTTCTATCACccatttataaacacctggaagtatttcattctgatcagtgaagctttggtaaattcagtaatttagaaaccattggaatAATTATCTGATTAGCTGTAGCCTCTCACAGCAATAGCTCCCTTggttgacttgcttaattgattaataaatcaCATGTGTTCACAATATTTAGAAACTGGTGATTTATGGTGACCTATAACATTTaactggattggggctctccaggaccagggttggagacccgTCCTAAAACTATTGTTTCAGGTTAAATTAGATATTTTGTAAAAGGGGGCCAGCAGGAGTTATTAGTAGTGCTACCCATGGCATTATCAGCATTTTCATTAGGggtttacatgtatttttttgtatgtattttaattaatctgcattTCACTATTCGGAAGCCCTGATGGGAAAGATTTCCTCATTTCAGGGAGTTGAGGGAATTACCCTGCTCACCTTCCACTCTAAACCAGAACTTAGTCTCACAGCCTCTTTCATGCAAAGGGTTAGGAGAGTGGGAAGAGGTCGCCTGGCCATGTGGAAGATGATTGGTTTGAATCCTTCAAAAAGAGGCTGCATGAGACCGGACAGGACAGTTGcccctttttcttattttccagaGGGTTCCCTCCAAGAGATGCTTCATGCCTTCTTCCCaaatctaattaattatttcacattccCAATCAGAGACTGAAATCAGATTTGATGTTCAGTGGAACCATTCAGACTTCATTAGAGACACAGGGCATAGTGGGTTTTACCCCCAAACCTCCAAAGCACAACTGACCCAGATCGATGAACTAGATCTACTGCTATAGGTATTCCAAGTGAAGACCATCAACTCTCAAGATTAATGAACTTTTTCAATCCTCTCCACCTTTGCCCCATTCACAggtaagataaaaaaaaataccttggGTCCTTTAAGAGGGTGCCAATGAAGTggaaacttttaaaatgaaacattcacaTCCACACTGAGGAGGTgccagttaaaaataaaattaagtagtACCCACACCCTTCTATATTACTACATATATAATCCATACATTACAGGTCTTCATCAGGAGATAAATCATAGCATTGATCCATATCCgtgttaaattaatttgttaggAGTAGATATATGCAAGTGTGCCACAGCAAACAAAGAATACCAGGAGTGAGCCAGGAGGAGGAGGGTTTATCCTGGAAGTTTATTAGGTGGAGTGTATACAAGTGGAACATCCAGCTGCCTCATGGTTTGGGGGGGTTGTACACATTTACACTATGTTCCACTATACCAAACACTGTGCTGCAATACTGAGCCTTCCACTACCACAGAGTGATGCGTCAGACATGTCCTGGATGAagtcccaaaaaaaaaaaaaaaaaattaataattatatatatatatatataattattaaatttagAAGTGGATACATATGCACAAGGCCCTAGCAAGCCAGGTCACCAATATTGCTTCCTATCCTACCACAAGTGCTCCCAATTTCACAATGGCTCAAATACTTTGCTTCTCTATTTATGCAACATCTTACCTTTAAttgaaaaaattaaagaaaata
>TU29003
aaaatatatatatatatatatatatatatataattattaaatttagAAGTGGATACATATGCACAAGGCCCTAGCAAGCCAGGTCACCAATATTGCTTCCTATCCTACCACAAGTGCTCCCAATTTCACAATGGCTCAAATACTTTGCTTCTCTATTTATGCAACATCTTACCTTTAAttgaaaaaattaaagaaaatattgtacaGCTCATGCCAGAATGGTAGCTAGTTTtcatttattggtttatttttcttataccAGTAGATCCACCCCATTTAAACCAAGCTGCAGGCTGTCAGATCACTGCTTCTCAACCTCCAATGGGAAGTGGGCTGGAAAAGGACACCGATTCATTCGGTTTCCTGTCAAACAAAGGCCTAATTTTATGCTTCAAACGTTCCATTGTTTTTCCTCCCAGAGATTGTAGAGAGACGTGCTATACTGCTATATGAATTTTGTATGGGGAGGGAGGGGCTGTTGGATAGAGAAGAATAAACCAAACTGAGCCAAAATGAGAGCCAGCCTGCACCCAAGAACAAGATGGAAAGCAAGATTCTCTcttctataaatattttaaatagaatttCTACAAGGAGTGCAAGGGAAGACTGACtaaacacagatgcacacattttacaaaGGCCTTGGATTTGGAGTTAACTGATGAGATCGATCAGTCATTACAGACAGgacccccccccttccctctccccctccagcCACACTAAATTGCTATGGTGCATCCATTTGGAGGTTTGCTGCGAGACGTGAAGGGACAGGAGAAGCCGGCTATTGCAGGGTAGTGGGGAGAGAGGGTAGAAATCTAGGGAGCTTTTCCTCCAGAGGTGGTTACAACTTCAGCTCCTTCTGAACACCCCACAGTGTGTCGGCGCTCTTCCTCAGCTGATCTTCCTCCTCTTTCTTCAGGCTCATCTTCACAATATCAGAGAGCCCAGTGTTGCCCAATACACAGGGGACACTCAGGAACACCTCATCATGGATTCCATGCATGCCCTGAGGAGGAGAGAACAGCAGGGCTTAAAAGAGGTACACCCATTTCAGTGGATTTGTAGACTTTACAaaaaggagtttttttttttaa

Function

symbol description
tsg101 Enables several functions, including protein homodimerization activity; ubiquitin protein ligase binding activity; and virion binding activity. Involved in several processes, including positive regulation of exosomal secretion; positive regulation of viral life cycle; and regulation of protein kinase activity. Located in several cellular components, including endosome; extracellular exosome; and nucleolus. Part of ESCRT I complex. Implicated in breast cancer; breast carcinoma; cervix carcinoma; endometrial adenocarcinoma; and prostate cancer. Biomarker of breast cancer and ovarian cancer.

NR:

description
PREDICTED: tumor susceptibility gene 101 protein

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0015031 protein transport biological_process

KEGG:

id description
K12183 TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007350 True 5669 mRNA 0.43 10 15366661 15379061
TU29003 False 1103 lncRNA 0.42 2 15372006 15379965

Neighbor

gene id symbol gene type direction distance location
AMCG00007351 hras,LOC107675296,LOC103357265 coding upstream 17119 15332608 ~ 15349542 (+)
AMCG00007345 NA coding upstream 194184 15166463 ~ 15172477 (+)
AMCG00007342 ptdss2 coding upstream 350126 14977530 ~ 15016535 (+)
AMCG00007343 NA coding upstream 394424 14945229 ~ 14972237 (+)
AMCG00007341 kcnq1,LOC106562821,LOC105889017,LOC102797067,LOC102292488 coding upstream 473514 14661678 ~ 14893147 (+)
AMCG00007354 NA coding downstream 112076 15492041 ~ 15579231 (+)
AMCG00007355 LOC105029471,LOC102789834,LOC107090945,LOC106925402 coding downstream 233830 15613795 ~ 15623775 (+)
AMCG00007356 LOC108275078,LOC108439244,LOC106560719 coding downstream 261930 15641895 ~ 15667423 (+)
AMCG00007357 brsk2b,LOC102314217,LOC102209371,LOC101068155,LOC107696635 coding downstream 299357 15679322 ~ 15691676 (+)
AMCG00007360 NA coding downstream 514799 15894764 ~ 15915649 (+)
G23130 NA non-coding upstream 56910 15217176 ~ 15309751 (+)
G23100 NA non-coding upstream 341973 15024226 ~ 15024688 (+)
G22979 NA non-coding upstream 1076036 14286133 ~ 14290625 (+)
G22962 NA non-coding upstream 1151605 14176735 ~ 14215056 (+)
G22944 NA non-coding upstream 1301017 14065371 ~ 14065644 (+)
G23154 mob2,LOC108411394 non-coding downstream 289977 15669942 ~ 15753760 (+)
G23189 NA non-coding downstream 650799 16030764 ~ 16067082 (+)
G23263 NA non-coding downstream 772495 16152460 ~ 16157347 (+)
G23294 NA non-coding downstream 913139 16293104 ~ 16296008 (+)
G23322 NA non-coding downstream 976725 16356690 ~ 16411211 (+)
AMCG00007352 NA other upstream 78701 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 876969 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 4753557 10611196 ~ 10613104 (+)
AMCG00007278 NA other upstream 5401394 9936920 ~ 9965267 (+)
G22372 NA other upstream 5866933 9436524 ~ 9499728 (+)
AMCG00007379 NA other downstream 1244425 16624390 ~ 16662700 (+)
AMCG00007417 NA other downstream 2818653 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 2827113 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 2837765 18217730 ~ 18224936 (+)
G23724 NA other downstream 2910143 18290108 ~ 18292338 (+)

Expression


Co-expression Network