AMCG00007356 (LOC108275078,LOC108439244,LOC106560719)


Basic Information

Item Value
gene id AMCG00007356
gene name LOC108275078,LOC108439244,LOC106560719
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15641895 ~ 15667423 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007356
CACAGGGACCTGAAACCAGAGAACTTGTTGCTAGACGAGAAGAACAACATCAGGATAGCAGATTTCGGCATGGCTTCACTACAGGTTGGAGACAGTCTGCTGGAAACGAGCTGCGGCTCCCCTCATTATGCCTGCCCCGAAGTCATCAGGGGAGAAAAATACGACGGGCGGAAAGCGGACGTGTGGAGCTGTGGGGTCATTCTCTTTGCACTTTTGGTGGGCGCTCTGCCATTCGATGACGACAACTTGAGAAATTTGTTGGAAAAAGTGAAGCTGGGTGTATTCCACATGCCGCACTTCATCCCTCCAGATTGCCAGAATCTTCTACGTGGCATGATAGAGGTGGATGCCACAAAGCGATTAACGCTAGAACAGATTCAGAAGCACACGTGGTACATAGGGGGCAAGAACGAGCCTGAGCCCGAGCAGCCCATCCCACGCAAAGTCGCCATCCGCTCCCTACCCTCGGCCGATGACATTGACCCCGACGTGCTTGAGAGCATGCACTCGCTGGGCTGCTTTCGAGACAAGAACAAGCTGATGAAGGACCTGCTGTCTGAAGAAGACAACCAGGAGAAGATGATCTACTTTCTGCTTTTGGACCGAAAGGAGAGGTATCCCAGCCATGAAGATGAGAACCTCCCACCTCGCAATGAAATAGGCCCCTGGCCTCCGCTCAATCAGCACTTGGTCTTTGTAGATCCCCCTAGGAAGCGTGTGGACTCGCCCATGCTGAACAGACATGGAAAACGAAGGCCGGAACGCAAGTCCATGGAGGTCCTGAGCGTCACTGACGGAGGTTCTCCTGTACCAGCGCGGCGGGCCATCGAGATGGCACAGCATGGGCAAAGGTAA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase BRSK2 isoform X5

GO: NA

KEGG:

id description
K08796 BRSK; BR serine/threonine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007356 True 855 mRNA 0.54 8 15641895 15667423

Neighbor

gene id symbol gene type direction distance location
AMCG00007355 LOC105029471,LOC102789834,LOC107090945,LOC106925402 coding upstream 18120 15613795 ~ 15623775 (+)
AMCG00007354 NA coding upstream 62664 15492041 ~ 15579231 (+)
AMCG00007351 hras,LOC107675296,LOC103357265 coding upstream 292353 15332608 ~ 15349542 (+)
AMCG00007345 NA coding upstream 469418 15166463 ~ 15172477 (+)
AMCG00007342 ptdss2 coding upstream 625360 14977530 ~ 15016535 (+)
AMCG00007357 brsk2b,LOC102314217,LOC102209371,LOC101068155,LOC107696635 coding downstream 11899 15679322 ~ 15691676 (+)
AMCG00007360 NA coding downstream 227341 15894764 ~ 15915649 (+)
AMCG00007370 NA coding downstream 413700 16081123 ~ 16100369 (+)
AMCG00007368 LOC103371360 coding downstream 522764 16190187 ~ 16222036 (+)
AMCG00007369 NA coding downstream 558515 16225938 ~ 16228023 (+)
G23130 NA non-coding upstream 332144 15217176 ~ 15309751 (+)
G23100 NA non-coding upstream 617207 15024226 ~ 15024688 (+)
G22979 NA non-coding upstream 1351270 14286133 ~ 14290625 (+)
G22962 NA non-coding upstream 1426839 14176735 ~ 14215056 (+)
G22944 NA non-coding upstream 1576251 14065371 ~ 14065644 (+)
G23154 mob2,LOC108411394 non-coding downstream 2519 15669942 ~ 15753760 (+)
G23189 NA non-coding downstream 363341 16030764 ~ 16067082 (+)
G23263 NA non-coding downstream 485037 16152460 ~ 16157347 (+)
G23294 NA non-coding downstream 625681 16293104 ~ 16296008 (+)
G23322 NA non-coding downstream 689267 16356690 ~ 16411211 (+)
AMCG00007350 tsg101 other upstream 261930 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 353935 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 1152203 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 5028791 10611196 ~ 10613104 (+)
AMCG00007278 NA other upstream 5676628 9936920 ~ 9965267 (+)
AMCG00007379 NA other downstream 956967 16624390 ~ 16662700 (+)
AMCG00007417 NA other downstream 2531195 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 2539655 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 2550307 18217730 ~ 18224936 (+)
G23724 NA other downstream 2622685 18290108 ~ 18292338 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024709 BRSK2 coding NC_007136.7 CM002909.2 24721849 ~ 25058508 (-)