AMCG00007365 (cars,LOC107578099,LOC102789774)


Basic Information

Item Value
gene id AMCG00007365
gene name cars,LOC107578099,LOC102789774
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16320997 ~ 16345580 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007365
ATGGCAGCAGCATCAGCGGATCAGGCGTTTGACTATGGTTTCTTGCTGTGCATAAGCGAGGAGTCCTCTAGGGTCGTTGCCCTGAACGAATATCTCAGCACCCGCAGTTACATCAGGGGTTTCACCTTCTCTCGAGCGGACACCGAAGCCTTCGAGCTTCTCCGCCGTCCGCCGTCCGAGCAGCACTTCCACGCACTGAGGTGGTACAGGCACATAGCGGCGCTCATACAGGAGAGCCCCGCGGAACCCGGCGCGTCCTGCAcaaagGGAAAGAGGGTTCAGCCACCTTGGGCTCCTCCACCGGGGTCAGAGCCACCAAAGCTCTGCCTGTACAATAGTCTGACTCGTAGCAAGAAAGTGCAGTGGTACTCCTGCGGTCCCACCGTCTACGATGCCTCTCATATGGGGCATGCCAGATCCTACATCTCTTTTGATATCCTGCGGAGGATACTGATGAACTACTTCAAATACGACGTTTTCTACTGCATGAATATCACGGATATTGACGATAAGATCATCAAGAGAGCCAGACAGAACTACTTATTTGAACAGTATACAGCCAAGAATCCAGCTCCCACCCAGATACTGGAGGATGTACTGACTGCAAAGAAGCCCTTCCAGGTGAAACAGGCAGAGACGACAGACCCTGATAAAAAACAGATGCTGGAGCGAATCGACGCAGCAGTGACTGCTGCCCTGGCTACCCTGCAGGGGGCAGTACAGAGCGGAGCTGCAGGCTCCCTCCTtcagagccaggctgagGTGCTACTGGGGGAAGCCAAGGATCTGCTGTCCGATTGGTTGGATTCCCAGTTTGGCAGTCAGGTGACGGAGAACTCAATCTTTTCCATCCTTCCTAAGTACTGGGAAGGGGAATACCACAAGGATATGGAAGCACTAAATGTGCTGCCCCCTGACGTGCTGACCAGAGTGAGCGAGTATGTGCCTGAGATTGTGGAGTTCGTCAAAAAGATTCTGGAAAATGGTTATGGATACGTCTCGAACGGTTCTGTGTATTTTGACACCGCCAAGTTCGACAGCAGTGAGAAGCACTCGTATGCCAAGCTGGTGCCAGAGGCAGTGGGGGACCAGAAGGCCCTGCAGGAAGGAGAGGGAGACCTCAGCATCTCCACAGACAGACTGAGTGAGAAAAGGTCTCAGAATGACTTCGCCCTGTGGAAGGCTTCCAAGCCTGGGGAGCCATCTTGGGACTCCCCCTGGGGAAAGGGGCGGCCAGGCTGGCATATTGAATGCTCTGCAATGGCTGGCTCAGTTCTGGGGGAATCCATGGACATCCACGGGGGAGGGTTCGACCTCCGCTTCCCCCACCATGACAATGAGCTGGCACAATCTGAGGCCTTCTTTGAGAATGACCACTGGGTGCGCTATTTCTTGCACACGGGTCACCTGACCATCGCAGGCTGTAAGATGTCCAAGTCTCTGAAAAACTTCATCACCATCAAGGATGCCCTCGCCAAGCACTCAGCTCGACAGCTGCGCCTGGCCTTCCTCATGCACTCGTGGAAGGACACTCTGGACTACTCCAACAACACCATGGAGTCTGCCATCCAGTACGAGAAGTTCATGAATGagttctttttaaatgtcaaggaTGTCCTGAGAGCTCCAACTGACATCACAGGACAATTTGAGAAGTGGGAGGGCCAGGAGACTGAGCTGAACAACAGTTTCTACAGCAGGAAGGCAGCCGTCCACGCAGCCCTGTGTGATAACCTGGACACCCGCACTGCCATGGAGGAGATGAGGGCACTgATATTCGGTGCGATAGATGGCATCGAACCCATTGGATTCCACGTAGGAGGAAATGGACAAAAAGTGGACCTGGAGAGCACAGTAATGCCATACTTGAAGGTGCTGTCCGATTTCAGGGAAGAAGTTCGCAAGATCGCCAGGGAGAAGAAAGTGACCGAAGTGCTGCAGCTGTGTGATGGGGTGAGAGATGAGATCCTGCCCGAGCTGGGAGTGCGCCTGGAGGATCATGAAGGCCTTCCCACGGTTGTCAAACTGGTTGACCGAGAGACTCTGCtgaaggagagggaggaaaagaaaaagGGTTTTCCCACTCATGATGCAGAGGGTAAGGAGATCAGCAAGGGCCAGACCAAGAAGTTGAAGAAGCTGTACGAAGCCCAGGAGAAACTGTACAAAGAGTACCTGGAGACAGCTCAGAACGGGGCCAGCGGCTGA
>TU29238
CTGTAATGCTAGCTAAGAAACTGTGCTTCATTATAATCACCTAGAAGTTGTTTTGGAATGGTCTGTGATCAgtgatttgtgtattttgcttCTCCCAGATGGCTAAACTGGCAAAAATGAAGATCCCGCCCAACGAGATGTTCAAATCAGAAACTGACAAATATTCTGCTTTTGACCAAATGGGTTTTCCCACTCATGATGCAGAGGGTAAGGAGATCAGCAAGGGCCAGACCAAGAAGTTGAAGAAGCTGTACGAAGCCCAGGAGAAACTGTACAAAGAGTACCTGGAGACAGCTCAGAACGGGGCCAGCGGCTGAGGAAGTGGATGAAAATCGCTCAGATAGGCGGCATGGGGAGAGCCACATCGACTAATCTTCTTCTCCAATCTGAGCTCAACACAGTCCAGCCTCTTCAGGGCCTAGATGGGGGATATACTGTCCCCAATGAGCTAAATATGGCCTGTTCTTGAAGACTTCAACAGGGTCTGACGTACAAAGTATTCCTTTCATTTCTTCTTCTATGTCGTTGTCTTTTTTGGTGCAAAATTCATGATCAAAGAACAGTGAAGTAAACGCCTGAAAGGTCTTTTTCATTGTCAAACTTTTTCAGGATTCAGAACTCTTGGTGTTACACTTCACCCGGTTTATAGAATCTGTATTGTAACTACGTGAGAAGGAGGACCTGGCCTGCTGAATATTCACAACCTCAACAGGCCGGTCCATTCAGTGAGCTTTAAACGGTTAATGGTATCCACAGCAAATTAAGGACAGGTGATTTTGTTGGTAACAGTCAAACAgggaattaaataaaagtttttgtCCTATGGTTGTTTTGTATGTTCAGTTAATTCAAGGATGA
>TU29239
CTGTAATGCTAGCTAAGAAACTGTGCTTCATTATAATCACCTAGAAGTTGTTTTGGAATGGTCTGTGATCAgtgatttgtgtattttgcttCTCCCAGATGGCTAAACTGGCAAAAATGAAGATCCCGCCCAACGAGATGTTCAAATCAGAAACTGACAAATATTCTGCTTTTGACCAAATGGGTTTTCCCACTCATGATGCAGAGGGTAAGGAGATCAGCAAGGGCCAGACCAAGAAGTTGAAGAAGCTGTACGAAGCCCAGGAGAAACTGTACAAAGAGTACCTGGAGACAGCTCAGAACGGGGCCAGCGGCTGAGGAAGTGGATGAAAATCGCTCAGATAGGCGGCATGGGGAGAGCCACATCGACTAATCTTCTTCTCCAATCTGAGCTCAACACAGTCCAGCCTCTTCAGGGCCTAGATGGGGGATATACTGTCCCCAATGAGCTAAATATGGCCTGTTCTTGAAGACTTCAACAGGGTCTGACGTACAAAGTATTCCTTTCATTTCTTCTTCTATGTCGTTGTCTTTTTTGGTGCAAAATTCATGATCAAAGAACAGTGAAGTAAACGCCTGAAAGGTCTTTTTCATTGTCAAACTTTTTCAGGATTCAGAACTCTTGGTGTTACACTTCACCCGGTTTATAGAATCTGTATTGTAACTACGTGAGAAGGAGGACCTGGCCTGCTGAATATTCACAACCTCAACAGGCCGGTCCATTCAGTGAGCTTTAAACGGTTAATGGTATCCACAGCAAATTAAGGACAGGTGATTTTGTTGGTAACAGTCAAACAgggaattaaataaaagtttttgtCCTATGGTTGTTTTGTATGTTCAGTTAATTCAAGGATGAATAAaggaattatgcattttttaatttactaaagaTGGCA

Function

symbol description
cars Predicted to enable several functions, including ATP binding activity; cysteine-tRNA ligase activity; and protein homodimerization activity. Predicted to be involved in cysteinyl-tRNA aminoacylation. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human CARS1 (cysteinyl-tRNA synthetase 1).

NR:

description
PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X2

GO:

id name namespace
GO:0006423 cysteinyl-tRNA aminoacylation biological_process
GO:0005829 cytosol cellular_component
GO:0004817 cysteine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01883 CARS, cysS; cysteinyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007365 True 2208 mRNA 0.54 21 16321578 16345580
TU29238 False 858 TUCP 0.43 2 16321037 16322651
TU29239 False 898 TUCP 0.42 2 16320997 16322651

Neighbor

gene id symbol gene type direction distance location
AMCG00007364 phlda2,LOC100705395 coding downstream 50620 16269967 ~ 16270377 (-)
AMCG00007362 ptpn5 coding downstream 332374 15979313 ~ 15988623 (-)
AMCG00007363 LOC108428835 coding downstream 382467 15934147 ~ 15938530 (-)
AMCG00007361 NA coding downstream 430632 15874967 ~ 15890365 (-)
AMCG00007358 mob2,LOC102782240,LOC108411394,LOC106561048 coding downstream 545485 15756293 ~ 15775512 (-)
AMCG00007374 abtb2b,abtb2,LOC107558307,LOC107675288 coding upstream 39805 16385385 ~ 16444113 (-)
AMCG00007373 b4galnt4 coding upstream 109953 16455533 ~ 16467687 (-)
AMCG00007376 tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565 coding upstream 319971 16665551 ~ 16670635 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding upstream 366512 16712092 ~ 16732845 (-)
AMCG00007384 NA coding upstream 625722 16971302 ~ 16978773 (-)
G23250 NA non-coding downstream 251533 16068083 ~ 16069464 (-)
G23225 LOC103376870 non-coding downstream 520045 15734625 ~ 15800952 (-)
G23105 NA non-coding downstream 1189399 15131388 ~ 15131598 (-)
G23101 LOC101154678 non-coding downstream 1296252 15024241 ~ 15024745 (-)
G23011 NA non-coding downstream 1840798 14478596 ~ 14480199 (-)
G23344 NA non-coding upstream 32938 16378518 ~ 16380291 (-)
G23379 NA non-coding upstream 315301 16660881 ~ 16662665 (-)
G23397 NA non-coding upstream 360709 16706289 ~ 16709180 (-)
G23429 NA non-coding upstream 602872 16948452 ~ 16948745 (-)
G23431 NA non-coding upstream 618387 16963967 ~ 16964267 (-)
AMCG00007366 NA other downstream 6965 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 2287785 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 2374932 13945643 ~ 13946065 (-)
G22838 NA other downstream 2968924 13351517 ~ 13352073 (-)
AMCG00007298 NA other downstream 6048302 10265045 ~ 10272695 (-)
AMCG00007375 NA other upstream 123887 16469467 ~ 16621905 (-)
G23661 NA other upstream 1709890 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1856879 18202459 ~ 18208020 (-)
G23838 NA other upstream 2430780 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 3446121 19791701 ~ 19799752 (-)

Expression


Co-expression Network