AMCG00007366


Basic Information

Item Value
gene id AMCG00007366
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16237461 ~ 16314032 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007366
ATGGAGGCAGACAAGGATGAAGGAAAAGGTAAGGTCGGAGATCAGGTTATGCAGAACCCTCAAGCCCTGGCTACTGTACAGGATCGACTTGACAGCATAGCGCATACTCCTTCCACTATCATCGACCTCGAAAGTCTACCAAAGTCAGTCAAACGACGAGTCAATGCCTTAAAGCAGCTGCAGGTCAAATGTGCACACATAGAAGCCACATTTTATGAGGAAGTTCATGAACTAGAGAGAAAATATGCAGCCCTCTACCAGCCACTGTTTGACAAGagaCGAGATGTAGTCACTGGGAAGGTGGAGCCCACTGACGAGGAGTGTGAGTGGCACAGTGATGTAGAATATGAGGAAGATTTAGCTGAGGAATTGACGAAGAAAGCTTCTGTGGAGGAGAAGACGGAGGATGCGGTTCAAGAAGACCCTAAGGGAATTCCAGAGTTCTGGCTCACGATCTTCCGGAGTGTAGACATGCTGAGCGACTTGCtacaaTCAATCTCACAACTGCACAGAATGGCGAGACATGCGGACGACAGAGAAACAGAGCTGgATGAGGACTCGGAATTCAGTCTAGCCACGGATTTTGAAATTGGCCATTTTTTCCGTGAGCGAATAGTCCCTCGAGCCGTATTGTACTTCACTGGAGAAGCTTTAGAAGACGATGACAGTtttgaagaggaggaggcagaggaaggagaagaggagCACGAAGACGATGgagacgatgatgatgatgatgcaaaCTTTGCTCCTAAG
>TU29198
GCTTCTTATTGGCTGAGATCTGATTAGGTGTCTGAAAGGGGTAGAAAAGGATTTTGCTTTAACCACATGTTTAAGCTGCCTGTTTGTCATAAGCAGCTATGAATATAACAATGAAATACCAAAGGAGAAATATGAGCTCTTACTGTGAGTGACCTCAATTAAGTTGTGGAGTAATTTGTGCACACCTTTTGGCAATTTTGAGAGTCGGAGCAAGTCAGGTGTACAGTCTCAGCTGCCTGCCAGCATTCCTGACATTAAAGAAACCGCCACATCCAGTGAAGGGTGGTATTTATTCCACCAGTCATGTGGACATTGAACAGTTGCTATTCCGGAAGCTTGAAACTGCACCTGTTATTTCTTTTAAACTTGAAACTAGCCTCTGCGaaattttttaatgtagttatttttttgtttatgggATTCTTACTGGTCAATTATCATGCTACAGTTGACCTTAAACTACAAACTGCACCTGTGTGACTTCTTTTAGATTTATTATAGGCATCTAAAAGGAATGCGGTTTGGCCAGCTGATAAGTGTGGGAAATTGTGGTGCATTTCAGAAATTACATTCATAAACTCGTCTCAGTTTGCCAAGCGGATGTAAAGAACTCTCGGTTTCATTTTGCGAAGGTGGTATCTTCTTTGGCTGAGCAAATATGTGCATTTTGCAGTAATTAAATCTGATCTGAAACTAAACGATAGATCCCATTACAGATCAGGAATTTAGGACTGCATGTAATTTTAGTTCTTGAAGGTAGTATTCGTGTGGGAAAGAAGGTGCCAATCCGTGTGTGATTGATGCATTTCCTAATGCAATCCTTTCTCGGAGAAAAGGGTTGAAGGGccattttgtttcccccctgCCAGATCGTTACACCCTCATAAAATGTGGTTTATTGAAACAACATGTAGGACTTtacaattcagattttttttttttttttttttttttttttaaacttgtcatGTTTCATTATATCCCTCCTAATAATGTGTGATTTGTAGAAGTTTcgattataattttttcaatatgtttttctctctttcagtgCTTGGAGATGGGGAGTCTTTGgATGAGGACTCGGAATTCAGTCTAGCCACGGATTTTGAAATTGGCCATTTTTTCCGTGAGCGAATAGTCCCTCGAGCCGTATTGTACTTCACTGGAGAAGCTTTAGAAGACGATGACAGTtttgaagaggaggaggcagaggaaggagaagaggagCAGCACGAAGACGATGgagacgatgatgatgatgatgcaaaCTTTGCTCCTAAGGCATAATTCATTCTCACTTCATGCATTGATAGAAAGACGCCACCCAACCTGCTGAATGCAAGCAGCAGTAATGTTGAGATACCGCTGCCATATGACTAGAGGCGCCATGGCGACCGATGCTGTCCAAATAGTCTGCAGATGGCGTTTCCTCCTCCCTGCAGAACAATCTCCacgatctttaaaaaaaaaaaaaaaaaaaaaaaaaaaactccaaaaaaaagttttaaagtgcatgacttttcattttcttgatttattttcgCTTTACATTGTACAGAGTAAACCTGTTACTTCCTGGGATTTCTGAAAGTACAGCAGTAATAAGGTGCAGTCGATATTCTGTGTTCATCTTCTGTGAATGCTCAGAAAAGCTAAGCCCACAGGCTTCTAGGAGAAAACGTTGAACTCAACATCAACACATTCCTGACACCCTGTAAAGAAATAATTTTGACAACTTAAACGCTTCAGACTTATCCACCATTCGACTTCACATCATAGGTTACTCAGGGTTTTTTTATGccaagaaaaaattaaatgtgtgaaagTTCAACTATTGACAGGAACTTAACGTCATTGGGATAGCCTGCTTACGTTTGTCCATCGTTTGTTAAAATCGTTCTCTTTTTAAATCTAAGGTTTCACTTATACAGtagagtttttttattattatcccTCCCCCTTAGCCCCTAGTTTGGTTGCGTTTGGTTGGGACTTTCTGTATTGATTCGaatataaattgttttgcaCAGCTTGAGAACGCACTGGGGAAACCAGATCCTGTTATTTTCGTCTGTCGTTTCATCTGTTGCCGCACACCCCCTCAACCCACTTACAACCCCCCCCATGTCTGAAATCCTGCATCTTCAGTCCTCATGAGAAACTGTTGCTTTGCCTCAGCACTTAAGTGAACACTTACAAGATATTGccaaattatttgtattcttttaaatTTAAGTTGAAAGGACTCtgcaatgttatattttaatataaaataaatagaaacaacCAGGAGGGTGATCAATCAACAGTGTGCAATGCACATAATGAATGCATCAAACCTCTTGCCAACTGCATCAGTTTTGTTTAGGCTTTGGGCTGTTGGTGAATGCATGCACTGCTTACTTGCCAACGAAGCGCTATAATATTAGAGAGCATACTGCATTTTGGGGTTTCAAGCTCTTGAAACCCAGgtcattttctttaaatcacaTCTTTATTAGTAAAATCCATTTGCTTCACTTCTGTTTAAACTTCCAAGGTGGGTCTATGAGCATGTCTTTAATCCATAGCTCAGTGGCAGGACACTTTGCTTGTATGGTAACAGTAATAAATATGTTGATGTTTAACttaataaatatgtgtataaatgtgtgtgtgtgatctatatcacactcacagacactaTAAGAATGTCATATACACTGACATGCTGTCTTTTTTGCAGGCAATGCATAGATttgtcaaaatatttttaattaaagggaaaaaatgttaatgttattaaagTTCTCTGAAGTAATGCCATTTAATTTGACCTTACTGACAAGACAGCTGTGCTTTACCTTAAtgatctatttatttcttatccaTGAGCACCTTATGGATACCTGCACCCTTTGAGGTCTCCAGATTTTATGCAGCCAGGTTGGCAAGTATCTGTTGTGGATCATTATGTTTTCATAGAATCTCAGATCAACAAGAGAAGTGTGCCTCACGGTACCTCGTACAGGGGCCAGACTCCAGACACCGCGGAGCGCTTGAGAAGGGGCCATGGCTGTCTATTACTGCTCAAAATGGTgcggttgtttttgtttgctttttgaatTCAAGAGTTTAGGTTTAAGCCTCATCCTGAGTGAATATTTAAGGAaaggcaggcagacaggcagtgCTACATACTTACTGGTTTTGGACATATTGGGTGGAGGGGTaggatttatttccatttttgaaaatgaaaagcaatatcTATACacctttaaatcatttttaaaactgcactTAACCCATAATGAAATTATtagaactgaaaatgaaattcaattGGTGAGAGTCCTTGTATGTAGAAAGTGCATTTTTGCCTTACACTGTTCTACACAATTTGTTACTCAATATGGTGTTTTCAATTTGTACAGAATAGCTAGAATATTCTATTAAAAGTTGTGCAACATGATAGCAGTTACTGTCTTTTTTGcgtgtattcattttttgttcttgcattaaACCAGCATAAACCTTTCCTCTTTGATGTAAAGATGGTCTGTTTGGAAAATTGTCGTGATATTTGAGCATTGTAGAAAGGGAAACGCCCTCTCTGGAGCTTATTTTGTCTATTAATAAAGTTTTATATTTGCCCAGTTCAGGGATTACCATTAcagttatttcatgttttttttttttttattattattgaagtagAATGCAAATGTACATCTAGTTTTCAATTAACAAAAATCAAACCGTAGTCAGTTTAAACCTGGGGagctggttttatttattacagcatgtatatatatgtgtgtgtgtatatatatttctatatatttctttttttattacacagtaGTTATGAGTAAATTTGGATcaaaagtgttatgtttggttTCTGGAAGGACAGGCATCACTGGTAATCATGTCTACAAAACGTTGCTTCCAAGAAGTGGTTGTAGTTGTCCTCAGCTGGCAGAGTCTATTTCTGTCACAGACTGCTCTTCAGTGTGTGTAGGCTGGCCAAGGGAGTGTGGTTTGGTGCagtaaaaatgcatattgtatGTTGAAGCAAAAATGGTAAATCTTTTAACTGGTTTGCACATTTACAGATGTACTAGATTTTAGTTTAGATGCAGAGGGAAATCAAGCTGACCAGCAACACAATGCCTGACTAAGTGGGAATATTTATACTATATGAagcaatatttatgtttaaacatatacacaattaaCACAGATATAAAgtcaacatgtaaagtgttggtcccatgttgcATGAGCtcaaatgaaagatcccagaaatttTCCATatgcatgaaaaatgtatttctctcaaattttgtgctaaaatgtgtttacatccctgttagtgagccaGTCTCCTTTgtcaagataatccatccacctgacaggtgtggcatatcaagaaactgattaaacagcatgatcattacacaggtgcaccttgtacTGGGGTCAATAAAAGGCTACTATAAAATGTGAAGCTTTGTCACGCAAAACAATGCCACACATGTCTCAAGTgttgagggagtgtgtgattggcatgccgactgcaggaatgtccaccagaacTGTTGCCAGagtaattaatgttaatttctctaccatTAACTGCCTCCAATGTCAAATGTGGCCTGACAGCCACAGACCACGTCaccacaccagcccaggactccacatctGGCTTCTTCACCTCCATGATTGTCTGACAACAGCCAtccggacagctgatgaaattgTGGGTTTACACAACCAAACAATCTCTGCAAAAACTGTCAGAAAccatctcagggaagctcatctgcggctcgtcatcctcaccagggttttgacctgactgcagctctggtggacattccttaGTCAGCATGGCAAAAACTAGAGACTTGTAATCCATAGATTAGGTcctaatttatgtatttaaattgactgatttccttatatgaactgtaactcactaaaatctttgaaattcttacatgttgcatttatatttttgttgagtatatattatatatgtaaagcTTAcccttattttgtgtgtgttttaaaagcagGGCAGGTTAAAATCCATTCTTGGGCttataatattgtaatgttaAAGCTATATTGTACAGTATGGAACTGTGATCTAAACTGAATGCAGTGTTTGCAATTGACAGACTCAAGTATCGGACAAGACCAAATG
>TU29199
GCTTCTTATTGGCTGAGATCTGATTAGGTGTCTGAAAGGGGTAGAAAAGGATTTTGCTTTAACCACATGTTTAAGCTGCCTGTTTGTCATAAGCAGCTATGAATATAACAATGAAATACCAAAGGAGAAATATGAGCTCTTACTGTGAGTGACCTCAATTAAGTTGTGGAGTAATTTGTGCACACCTTTTGGCAATTTTGAGAGTCGGAGCAAGTCAGGTGTACAGTCTCAGCTGCCTGCCAGCATTCCTGACATTAAAGAAACCGCCACATCCAGTGAAGGGTGGTATTTATTCCACCAGTCATGTGGACATTGAACAGTTGCTATTCCGGAAGCTTGAAACTGCACCTGTTATTTCTTTTAAACTTGAAACTAGCCTCTGCGaaattttttaatgtagttatttttttgtttatgggATTCTTACTGGTCAATTATCATGCTACAGTTGACCTTAAACTACAAACTGCACCTGTGTGACTTCTTTTAGATTTATTATAGGCATCTAAAAGGAATGCGGTTTGGCCAGCTGATAAGTGTGGGAAATTGTGGTGCATTTCAGAAATTACATTCATAAACTCGTCTCAGTTTGCCAAGCGGATGTAAAGAACTCTCGGTTTCATTTTGCGAAGtgCTTGGAGATGGGGAGTCTTTGgATGAGGACTCGGAATTCAGTCTAGCCACGGATTTTGAAATTGGCCATTTTTTCCGTGAGCGAATAGTCCCTCGAGCCGTATTGTACTTCACTGGAGAAGCTTTAGAAGACGATGACAGTtttgaagaggaggaggcagaggaaggagaagaggagCACGAAGACGATGgagacgatgatgatgatgatgcaaaCTTTGCTCCTAAGGCATAATTCATTCTCACTTCATGCATTGATAGAAAGACGCCACCCAACCTGCTGAATGCAAGCAGCAGTAATGTTGAGATACCGCTGCCATATGACTAGAGGCGCCATGGCGACCGATGCTGTCCAAATAGTCTGCAGATGGCGTTTCCTCCTCCCTGCAGAACAATCTCCacgatctttaaaaaaaaaaaaaaaaaaaaaaaaaaaactccaaaaaaaagttttaaagtgcatgacttttcattttcttgatttattttcgCTTTACATTGTACAGAGTAAACCTGTTACTTCCTGGGATTTCTGAAAGTACAGCAGTAATAAGGTGCAGTCGATATTCTGTGTTCATCTTCTGTGAATGCTCAGAAAAGCTAAGCCCACAGGCTTCTAGGAGAAAACGTTGAACTCAACATCAACACATTCCTGACACCCTGTAAAGAAATAATTTTGACAACTTAAACGCTTCAGACTTATCCACCATTCGACTTCACATCATAGGTTACTCAGGGTTTTTTTATGccaagaaaaaattaaatgtgtgaaagTTCAACTATTGACAGGAACTTAACGTCATTGGGATAGCCTGCTTACGTTTGTCCATCGTTTGTTAAAATCGTTCTCTTTTTAAATCTAAGGTTTCACTTATACAGtagagtttttttattattatcccTCCCCCTTAGCCCCTAGTTTGGTTGCGTTTGGTTGGGACTTTCTGTATTGATTCGaatataaattgttttgcaCAGCTTGAGAACGCACTGGGGAAACCAGATCCTGTTATTTTCGTCTGTCGTTTCATCTGTTGCCGCACACCCCCTCAACCCACTTACAACCCCCCCCATGTCTGAAATCCTGCATCTTCAGTCCTCATGAGAAACTGTTGCTTTGCCTCAGCACTTAAGTGAACACTTACAAGATATTGccaaattatttgtattcttttaaatTTAAGTTGAAAGGACTCtgcaatgttatattttaatataaaataaatagaaacaacCAGGAGGGTGATCAATCAACAGTGTGCAATGCACATAATGAATGCATCAAACCTCTTGCCAACTGCATCAGTTTTGTTTAGGCTTTGGGCTGTTGGTGAATGCATGCACTGCTTACTTGCCAACGAAGCGCTATAATATTAGAGAGCATACTGCATTTTGGGGTTTCAAGCTCTTGAAACCCAGgtcattttctttaaatcacaTCTTTATTAGTAAAATCCATTTGCTTCACTTCTGTTTAAACTTCCAAGGTGGGTCTATGAGCATGTCTTTAATCCATAGCTCAGTGGCAGGACACTTTGCTTGTATGGTAACAGTAATAAATATGTTGATGTTTAACttaataaatatgtgtataaatgtgtgtgtgtgatctatatcacactcacagacactaTAAGAATGTCATATACACTGACATGCTGTCTTTTTTGCAGGCAATGCATAGATttgtcaaaatatttttaattaaagggaaaaaatgttaatgttattaaagTTCTCTGAAGTAATGCCATTTAATTTGACCTTACTGACAAGACAGCTGTGCTTTACCTTAAtgatctatttatttcttatccaTGAGCACCTTATGGATACCTGCACCCTTTGAGGTCTCCAGATTTTATGCAGCCAGGTTGGCAAGTATCTGTTGTGGATCATTATGTTTTCATAGAATCTCAGATCAACAAGAGAAGTGTGCCTCACGGTACCTCGTACAGGGGCCAGACTCCAGACACCGCGGAGCGCTTGAGAAGGGGCCATGGCTGTCTATTACTGCTCAAAATGGTgcggttgtttttgtttgctttttgaatTCAAGAGTTTAGGTTTAAGCCTCATCCTGAGTGAATATTTAAGGAaaggcaggcagacaggcagtgCTACATACTTACTGGTTTTGGACATATTGGGTGGAGGGGTaggatttatttccatttttgaaaatgaaaagcaatatcTATACacctttaaatcatttttaaaactgcactTAACCCATAATGAAATTATtagaactgaaaatgaaattcaattGGTGAGAGTCCTTGTATGTAGAAAGTGCATTTTTGCCTTACACTGTTCTACACAATTTGTTACTCAATATGGTGTTTTCAATTTGTACAGAATAGCTAGAATATTCTATTAAAAGTTGTGCAACATGATAGCAGTTACTGTCTTTTTTGcgtgtattcattttttgttcttgcattaaACCAGCATAAACCTTTCCTCTTTGATGTAAAGATGGTCTGTTTGGAAAATTGTCGTGATATTTGAGCATTGTAGAAAGGGAAACGCCCTCTCTGGAGCTTATTTTGTCTATTAATAAAGTTTTATATTTGCCCAGTTCAGGGATTACCATTAcagttatttcattttttttttttttttttttttgcctgtatCACAAACACTAATTACCCTCCGTCACACCTTCAAGGATTAAATGGATCTTCGAAACCTACCAATCAAAGCAGCTCTTATTTTCTTGTCACCACTGAACAGAGGTAGCTGGGGCAAAGGGTGGAAAATTCGG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007366 False 756 mRNA 0.48 9 16297002 16314032
TU29198 True 5203 lncRNA 0.38 6 16291541 16299256
TU29199 False 3409 lncRNA 0.38 8 16237461 16299256

Neighbor

gene id symbol gene type direction distance location
AMCG00007362 ptpn5 coding downstream 248838 15979313 ~ 15988623 (-)
AMCG00007363 LOC108428835 coding downstream 298931 15934147 ~ 15938530 (-)
AMCG00007361 NA coding downstream 347096 15874967 ~ 15890365 (-)
AMCG00007358 mob2,LOC102782240,LOC108411394,LOC106561048 coding downstream 461949 15756293 ~ 15775512 (-)
AMCG00007359 mob2,LOC108411394 coding downstream 481211 15750108 ~ 15756250 (-)
AMCG00007374 abtb2b,abtb2,LOC107558307,LOC107675288 coding upstream 71353 16385385 ~ 16444113 (-)
AMCG00007373 b4galnt4 coding upstream 141501 16455533 ~ 16467687 (-)
AMCG00007376 tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565 coding upstream 351519 16665551 ~ 16670635 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding upstream 398060 16712092 ~ 16732845 (-)
AMCG00007384 NA coding upstream 657270 16971302 ~ 16978773 (-)
G23250 NA non-coding downstream 167997 16068083 ~ 16069464 (-)
G23225 LOC103376870 non-coding downstream 436509 15734625 ~ 15800952 (-)
G23105 NA non-coding downstream 1105863 15131388 ~ 15131598 (-)
G23101 LOC101154678 non-coding downstream 1212716 15024241 ~ 15024745 (-)
G23011 NA non-coding downstream 1757262 14478596 ~ 14480199 (-)
G23344 NA non-coding upstream 64486 16378518 ~ 16380291 (-)
G23379 NA non-coding upstream 346849 16660881 ~ 16662665 (-)
G23397 NA non-coding upstream 392257 16706289 ~ 16709180 (-)
G23429 NA non-coding upstream 634420 16948452 ~ 16948745 (-)
G23431 NA non-coding upstream 649935 16963967 ~ 16964267 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 2204249 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 2291396 13945643 ~ 13946065 (-)
G22838 NA other downstream 2885388 13351517 ~ 13352073 (-)
AMCG00007298 NA other downstream 5964766 10265045 ~ 10272695 (-)
AMCG00007299 NA other downstream 5990715 10152480 ~ 10246746 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 6965 16320997 ~ 16345580 (-)
AMCG00007375 NA other upstream 155435 16469467 ~ 16621905 (-)
G23661 NA other upstream 1741438 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1888427 18202459 ~ 18208020 (-)
G23838 NA other upstream 2462328 18776360 ~ 18777638 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1255010 NA non-coding NC_048579.1 CM023233.2 8367690 ~ 8372712 (+)