AMCG00007376 (tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565)


Basic Information

Item Value
gene id AMCG00007376
gene name tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16665551 ~ 16670635 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007376
ATGAATAACCTGCCTGTGGATTCATTTCAGGTGAAGAGCGAAGGGCCCAAGTTGGTGCCCTTCTTCAAGGCcacctgtgtttattttgtccTTTGGCTGCCAACATCCAGCCCTTCATGGTTCAGCGCCCTCATCAAGTGTTTGCCCATCTTCTGTCTCTGGGTCTTTCTCTTGGCCCATGGCATCAGCTTCTTAGGAGCCCACTCCAGTGCCCGAAAAATTCTGGCAGGCCTGATCTTCTCTGCTCTGGGAGATGCCTTTCTGATTTGGCAAGAGCAGGGTTACTTCAGTCATGGGCTCCTGATGTTCGCCATCACTCACATTCTGTACTCTTCGGCCTTTGGGATGAAGCCACTGAATCTCCGGGCTGGATTGGTGATTGGCATTGTGTCTGGGCTGAGCTACGCTCTGCTGTACTCCTATTTGGCAGGGCCTTTCACCTACCTGGTGGCGGTCTACATCGGCCTGATTGGCTTCATGGGTTGGAGGGCTATCGCTGGAGTGCAGCTGTCCGATGACCTCTGGACGTGGACCAAACTCTCGGCCTGCCTCGGGGCCATGCTCTTCATGGTATCGGACCTCACTATCGCCGTCAACAAGTTCTGCTTCCCAGTACCCCACTCCCGTGCCATCATCATGGCCACCTACTATGCGGCACAGATGCTGATCGCCCTGTCTGCCGTCGAGTGCCAGGATGAAGACCACCCCAAGAAGATGGCATGAGGCTGCTGCCGGGCACAGGCTGCAATGCCAGGGACCCCTTCTTTCAGGCAAGGTGTTGCCCATCTGATTTTCCTTTACCGGATGTCGCAACTTCTGCCAAAAAAATGCAACCAAACCCAACAACAttgccccctctccctctgctctGCTTCCTATCTGTTCGGCCAAGCggtccatttttttatttggggtGGTTGGAATTGTTTTTAAGACAACGCATCGATTGAATGGAACACATTAGCCATGATGGAATGCACCAGTCCCAGGTGCCCACCAACCCtcttcccttccctctctccaaCTCCTCTGCCCTTCCCACGCCCTATTTTCAATATTGTGGTCCAATGATAACTGGAATTTCAACTCGGTGCCATTGCCAGGCACCCCTTGTGATTGTGCTGTTATGGGAGAAGTTTTAttcttttagatttttctctttctctttcttttatttggCTTGCTCTCTACCTACAGTAGACTGGTTAGACcactctgtgctgctgtgatgTTGTGTGGAATGCAATGTTCTCAATGAAGAcctttattttcacttttaagCTAGTTGACTAGACTTCCTTTCATATGCCTAGTGCTACTGAAAACAGACTGTTGTCTTCATATTGTtttgataatattttttttcttttacattatgTGCAGGTTTAGTGATCCAATCCATAGATTCCACTCATCACAGTAGAGTTTTCAATGCTTGGGATGTTGGATGAGCATTTCTTTTCAGATTAGGGTCTCTTTTTGATCAGGagctggtcctctcctgcctcttAGTATGATAGACATGTGAATCGGAGTGACAGTGTGCATTGACAATTTGAAAAAATTTACTGCGGTACAGAAAAAAAACCAAATACCTTAGCCCAGTTTCAGCAGTGTTTATGTGCCCTACAATACCACCCTTCCAGTGTATTGTCATATTTTCTGCTGGATTGACATTTCAGagtttctgtttcttcttttttgttgaAGAGAAAATTCCACCCTCCCCCCCGCCTCCCTACAGTCACTCCCACAGGtcaaaatattattgaaaatgtcactttttttgtttgtttgttactaAAACTAAAGCATGTCAAGTTTTGTAAAGTGTTTGCGGGCACCCTCACCGCTGTTAACAACCTATGCCTGCCCACTCTGCCACCACAGTGCTGCAAGAGCCTGCTGAGAACACATTGGGGGATTTGGACAGAGACTAAAGCAGCAAGGAGACTCAAGCAAGGACCAGTTACAGTATTTTTgataacatttcaaaacacatttatattcataaaatGCACAAGTAATGCATCTCTAATGTAGTCACTTAGGGCTAGGAAGAAGATTTAAGCTAAGACTGGGAACACATTCAACCACCAAGGACCGTGATTTTAGACCTTTCCAGTTGGACAGCTGCCAAAAAGGGGGTCTCTAACAAAAACTAAACGGAAGGAAATACTGCAGTACATTCTGCTGTTTCAGAGGAACCTCACTGTGACCACCATCAATCCACCCCACAGAACACAGTAGCATCaacttattttgtaatgttttttttatgttttatgtgtcACCTATTACAGGTTTCCAGAATAGATTGATGGTATTCGCAAGTGTCACAAAACAACCCTGCTTGTTTGTCCTCAAAAGTATTTCTTAATTGTGCCCTTTTCTGGCACACAACTCAGGATTCCTtcgaaataagtatttttttcaagaTTGTGTTCAGACGCTGTAATATATGCAGACGTTTTGAATCGGTgtggtttgaaaatgtttgtgtttgaatcAAGATGGCGCTACTAAGCACTCTATTGGAAGTCGGACTGATCGGAGGAGTGAAGATTCTTCACTATGTAAACACTGCCGATGTTAAGCGATCTTCAGCTGAAGTGCTTCCACAGGGATTGGTCAGATAATTTCCCTGTGTTAGTGTTGGCAATGACAGTTAATATGTGCTGTCTTTATTGTCTCTCTTAACCAGTGCAAATGTAGATCCCTACACTTCATAACCTCGATCTTCAGCCAGTTACTgacattatttagtttttgtctgTTGACGcctatttttgtttcatgttttttatgtttattttggttttagttgACAGtcttttatatttagaaaagaaCGCACAGGATAAAGGACTGGAGTGAACTTTAATCCGATCTCTACCTTTGTCGTTAATTTAGTATATTCACTGGTCTGATtgtcttcatgtttttttcatttgtcttttaaCTCTGGCACTTATCGGTGCcctttgttcagtttttgaTCCATTGAATTGTTCCTAAAGTATCTTATTTCTCTTACTGTAAAGTAGGAATTCTTGCAAATGTCCAAAAAAATAACTGGAATTGTGATTTATACCACCTcgaatttttttcttttttttttct

Function

symbol description
tmem86a Predicted to enable alkenylglycerophosphocholine hydrolase activity and alkenylglycerophosphoethanolamine hydrolase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; otic vesicle; and sensory system. Orthologous to human TMEM86A (transmembrane protein 86A).

NR:

description
PREDICTED: lysoplasmalogenase-like protein TMEM86A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007376 True 3123 mRNA 0.43 2 16665551 16670635

Neighbor

gene id symbol gene type direction distance location
AMCG00007373 b4galnt4 coding downstream 197864 16455533 ~ 16467687 (-)
AMCG00007374 abtb2b,abtb2,LOC107558307,LOC107675288 coding downstream 221438 16385385 ~ 16444113 (-)
AMCG00007364 phlda2,LOC100705395 coding downstream 395174 16269967 ~ 16270377 (-)
AMCG00007362 ptpn5 coding downstream 676928 15979313 ~ 15988623 (-)
AMCG00007363 LOC108428835 coding downstream 727021 15934147 ~ 15938530 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding upstream 41457 16712092 ~ 16732845 (-)
AMCG00007384 NA coding upstream 300667 16971302 ~ 16978773 (-)
AMCG00007387 tspan18 coding upstream 379081 17049716 ~ 17058918 (-)
AMCG00007386 NA coding upstream 479537 17150172 ~ 17168177 (-)
AMCG00007388 NA coding upstream 516203 17186838 ~ 17190438 (-)
G23379 NA non-coding downstream 2886 16660881 ~ 16662665 (-)
G23344 NA non-coding downstream 285260 16378518 ~ 16380291 (-)
G23250 NA non-coding downstream 596087 16068083 ~ 16069464 (-)
G23225 LOC103376870 non-coding downstream 864599 15734625 ~ 15800952 (-)
G23105 NA non-coding downstream 1533953 15131388 ~ 15131598 (-)
G23397 NA non-coding upstream 35654 16706289 ~ 16709180 (-)
G23429 NA non-coding upstream 277817 16948452 ~ 16948745 (-)
G23431 NA non-coding upstream 293332 16963967 ~ 16964267 (-)
G23439 LOC106560706,LOC103380370,LOC107104255,LOC105904524 non-coding upstream 322280 16992915 ~ 16993435 (-)
G23440 NA non-coding upstream 339154 17009789 ~ 17010047 (-)
AMCG00007375 NA other downstream 43646 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 319971 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 351519 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 2632339 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 2719486 13945643 ~ 13946065 (-)
G23661 NA other upstream 1384835 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1531824 18202459 ~ 18208020 (-)
G23838 NA other upstream 2105725 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 3121066 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 3244511 19915146 ~ 19923153 (-)

Expression


Co-expression Network