AMCG00007377


Basic Information

Item Value
gene id AMCG00007377
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16683676 ~ 16692219 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007377
GCAGGCTCGGGCGATTCTCCAGTGTTTCTGCATTTGTTGgaactgttttatttcaatttagcaaCACGTGTTTGATGCTTTCTTTGGATTAACAGGTTGTTTCTTTGGTTGCCATTGTGTCGTGGATTGTTTGGGCGGTTGTTAACGCTTCGATCTGCGGTTTTTCACTGAGTTTTTTCCCAGCTGGGAGAGACCGAGAGACAGCCCTGTGTTGCTCGGGGATTGCGACGCGGTTCTCGGGGTTCTGGGAGGGAGACATAGGCCGTTGCTCTTGTGTTTTCGCTGCTGCCCAACAGAACGAGAGCCTACGGACGTCGGTATGGACTTCGAAAATGTCCTGTCTATTGCCTCGCAAAACCAGGGCCTCAGCAACCTACCGcaaaaGCGGTACAGTTTGGCAGTGGGACCCCCCAAAAAGGATCCTAGAGTGAAAGGAGTCCAATCGGCAGCAGTGCAAGCCTTCCTGAAGAAGAAGGAGATAgagaacaaaaagaaagACCTAGagcacaagaaaaagaaagaggaactGCTTGCCAAGCGAGTGGAGCTGAAATCAGACCGCAAGGCACGAGCCATGGCTTCTCGAACCAAGGACAACTTTAGGGGCTACAATGGCGTCCCTGTGGTGGAGCTGCCCAAGAAGAGGAGGTCACGGGAAGAAATGGCTGAGGAGAGGCAGCGTGGGGGAAATGATGACCAAATGTATGATGATGAGGACTATTACGAATACACGCAGACAGATTctgaaggtgaggaagaggaaaaaactgaatttcagtGCCAAGTGCCCAGCAAAATGCCTGACAAATCCGCCAAGAAACCTTCTGCCCCTGTCAAGGCGGCTCCTCCCCCCATGAACTTTGCCGAACTCCTGAAACTGGCGCAGAAGAAGCAGTTTGAACCGGTGGAGTTGAAACCTTCCAAGAAAAACGAGGAGAGGCTCCGTACTGCCGAGGAGTTAAAGGAGTTGGAATTTCTGGAGCGCAAGAGCAAGAAAGCAGATAAAGCAAGGGAAGCTAAACCAGACCGAGACAGCAGCAGGACACAGGTGGCCTCCAGCTCTTCAAAGAAAAGTGTGTCGGACAAGGACATGAGAAACGGAAAGCTACAGAAGACTTCTTCAGAGAAGTTCCCTCCTAGCACTGGTGCAAGTAAAAAGCCAAAGCAGTCTTCGTCAGGTGAACGACCTCACGGTTCTGCCAAATTGTCTCAGGGAGATCGACCTAAACATGTACCAGTTGTACAACACGGTCATATTGGCAGCTCCAGCTCCTCAGGTCCCACCAGTGGCAAAATTTCATCAAAATCCAGCTCTCACAGCTCTGCCAAATCATCTGTACCCAGGCCATCATCTGGTCAGAAACCTATCACCACCAGTGACCTTAatcaaaggaaaggaaatcCATTGTGCTCCCCTGGGAAAGCTGTGCGACCTGGAGTGAACTCTGCTCCTGCTAAACCCTCGAGCTCGGGTCAAAGTCGGCAAGGAAGCAGTGGGCAGGTCAGACCCAGTTCAGGCACAAGTAGCTCTGGTAAAGCAGGGAGTGTGGGCCCCCCTCGACCAGTAAAGAGTGAACCAGTACGACCCGGAAGTAGCATGCCAGCACGTCCAAGTACTAACGGACAATCCCGACCGCTTTCTAACGGACAATCCCGACCGCTTTCTAACGGACAATCCCGACCGCTTTCTAACGGACAATCCCGACCGCTTTCTAACGGACAATCCCGACCTGTTCCCAGTGGAGCACCCAGAACAGGGAGCCATCCACAGCCACGACCTGGAAACAATCCACAAGTCCGCAGCAGTGGTGGAGATATTCGACCAGCAGGCAGTGGACCAGGGCGACTCGGGACCAGTATGCCTGGGCGACCTGGAAACGGCATGGATTCTGGACCTGACCGGCCCAAATGTACAGTGGTGTCGGAAACCATTTCATCTAAGAATTTTGTCCCTAAGCCGGGAACTGCTCCTAGACTTCCCCCTCCAGGTCACAGGCCCATGATGAGACCTCCAGGCCCCATGTTGCCACCAATCACTTCCAGTTACAAGCGTAAGtttgacgatgatgatgatgaatacgACTCGGAGATGGAAGACTTCATTGATGACGAAGGGGAAGATCAAGATGAAATCTCAAAGCACATCAAGGAAATCTTTGGATATGACCGCTCCAAATACCGAGATGAGAGTGACTATGCACTGCGTTATATGGAGAGCAGTTGGAAAGACCAACAGAAAGAGGAAGCAAGGAGTTTACGTTTGGgtatcaaggaggatgaggaggataTGCTGTTGGAGCAAGAGGAGATGAAAAGGAAACTGGCGATGAAATCAAAACGAAGGAAACCTTGATgagggtgtgggggggtatCAAAGGCAGTCATTGGCCAGCATTACTGCCTGCATTGTTACACTATTTATTTCCAGAGAATTCCTGAGAACATGAAACTGAGCAGGTTTGCACTATTGAGTCATTTCATTTTGAGCTGTGcatcataaaagaaaaaaagaaatgtatatttatcaggatttccatttatttcttttctataaaaaatagaaaacctgGGGCCTGTGCACATAGCATCGCTTGATTCTTCAATGGATAGCGGCTACATCTCAACTTTTTGCAATACAGAACAGACAATAGTGTTCATGAACTTTATACTGTTctagttttattaataatattaatataattgagTTGGGAAGAATACATTAT

Function

GO: NA

KEGG:

id description
K15193 SPTY2D1, SPT2; protein SPT2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007377 True 2723 mRNA 0.49 6 16683676 16692219

Neighbor

gene id symbol gene type direction distance location
AMCG00007372 NA coding upstream 302460 16347511 ~ 16381216 (+)
AMCG00007371 nap1l4,LOC100702699,LOC106905261,LOC108237555,LOC106959919,LOC103466161 coding upstream 380558 16301868 ~ 16303118 (+)
AMCG00007367 NA coding upstream 417147 16249097 ~ 16266529 (+)
AMCG00007369 NA coding upstream 455653 16225938 ~ 16228023 (+)
AMCG00007368 LOC103371360 coding upstream 461640 16190187 ~ 16222036 (+)
AMCG00007378 NA coding downstream 5053 16697272 ~ 16709296 (+)
AMCG00007381 NA coding downstream 69498 16761717 ~ 16765628 (+)
AMCG00007382 NA coding downstream 99416 16791635 ~ 16799244 (+)
AMCG00007383 LOC108275360,LOC105008177 coding downstream 116045 16808264 ~ 16836323 (+)
AMCG00007385 NA coding downstream 300824 16993043 ~ 17033247 (+)
G23322 NA non-coding upstream 272465 16356690 ~ 16411211 (+)
G23294 NA non-coding upstream 387668 16293104 ~ 16296008 (+)
G23263 NA non-coding upstream 526329 16152460 ~ 16157347 (+)
G23189 NA non-coding upstream 616594 16030764 ~ 16067082 (+)
G23154 mob2,LOC108411394 non-coding upstream 929916 15669942 ~ 15753760 (+)
G23432 NA non-coding downstream 275643 16967862 ~ 16968068 (+)
G23433 igf2b,igf2,LOC105904486 non-coding downstream 277586 16969805 ~ 16973419 (+)
G23449 NA non-coding downstream 355711 17047930 ~ 17048318 (+)
G23497 NA non-coding downstream 660353 17352572 ~ 17352790 (+)
G23515 NA non-coding downstream 782744 17474963 ~ 17479749 (+)
AMCG00007379 NA other upstream 20976 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 1303711 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 1395716 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 2193984 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 6070572 10611196 ~ 10613104 (+)
AMCG00007417 NA other downstream 1506399 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 1514859 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 1525511 18217730 ~ 18224936 (+)
G23724 NA other downstream 1597889 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 1875023 18567242 ~ 18570472 (+)

Expression


Co-expression Network