AMCG00007378


Basic Information

Item Value
gene id AMCG00007378
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16697272 ~ 16709296 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007378
CCCAATTCACGGAAGTGTCTACTAAAGTAGTACAGGTTATAGCAGCGTCTCCTAATGCCAACGTTTGCTGCttattaattgaatttcatTCATGCAGACATTCAATATATAGTGAGCAATGGATTTAAGCCaagaaacaatcaagaaaaCACTGTCAAAGTACAAATTCCGAGACGTGGCAATTGAAGAACTACAGAAAGTGTATCGGATTTACCCGGGAATAGAGCCATTCGCCGGCACTTACActTTCAGTGATAGCTCTCAAAAGGACCTTTTGAAGCTGGTTGGAAATATCCCAGTCAGATATCAAGGTCAGTCCTACAACTTGCCAATCCAACTATGGCTGCTGGACTCCTTTCCCTTTACACCCCCTATATGCCTCCTCAGGCCCTCCCCCAACATGGTAATCCGTGTAGGGAAGCATGTGGACACCCATGGGAAGATACACCTGCCCTACCTCCACAACTGGGATCATCCAAAGTCTACGGTGAACGGGCTTCTCAGTGAAATGATTGCTAAGTTTGAAGAAGATCCACCTCTTAGCACTAAGCAATCTGGGACTGAGAAAGATCCGGCTGAGCTGTTGGCTTATGTAGCCAAAATCTCTGGAGGAATGACTGATATGAACCTCCACACCCCCGGAAGGATCGGTGGAGTCCAGCCAATCAACAAAGTCACAGTGGTAGGGGGTGGTGACTTAGGGGTGGCCTGCTTGATGAGTATTTTGGCCAAGGGCTGTGTGGATAAGCTGATCCTCATTGACCTCTCTGAAAACACCACAGCACTGGGGACCATGGATCTGGAGATCTTCAACCTGCCCAAGGTGGAGNNNNNNNNNNTGGATAAGCTGATCCTCATTGACATCTCTGAAAACACCACAGCACAGGGGACCATGGATCTGGAGATCTTCAACCTGCCCAAGGTGGAGGTCAGCCAAGATCTTGCAGCCTCAGTGGGTTCTAAGGTTGTTGTGGTGACAGCCAATGCCTGGAGCAATGATGAGTCTTACGTGGGTGTTGTCCAGACCAATGTGGATCTTTACAGAGGGATCATACCCAGTCTGTCTCGCTTCAGCCCGGATGGAGTGCTGCTCATTGCATCCCAGCCAGTGGACATCATGACGCATGTGGCTTGGAAGCACAGTGGGCTGCCAGCGTCGCATGTGATCGGTACCGGGTGTAACCTGGACTCGGAGCGCCTCACCTACATCCTCTCCGTCGTGCTCATGACCAGAACGGCCAGCAAACAGCCCTGGGTCATCGGAGAGCGGTCTGACAATAAAGttgctGCCTGGAGTACCTCTGTGCCAACGACAGACAGCCAACCAGAAGTCATTCCAGGGCCCAGCTCCACAAAACCACTGACAGACCGGGCAATTGAGATTCTGAAGGGGAAAGGCCAAAGGTCATGGTCTGTGGGACTCTCAGTGGCCGACATCGTACAGACTATCGTGCACGACCAGAGGAAGACGCACTCCGTCTCTACCCTGGCACAGGCATGGGGTGGCATCAGCGGGGAGGCATTCCTGAGTTTGCCCTGTGAGTTGGGCACAAGAGGGGTGACCAAGATCTCCAAACTGACCCTGGGGCAGGAGGACAACTCCAAATTAAGGGAGAGCGCTGTATCTCTGAGCAACTTTCTACAGCAGCTCCGGATATAAAGGCAAGATCCCTGTAGACGCTTGTGGTACGCATCTTAACACAAGCTGTCCCGAAGGAGCCAGGAAGTAAGCGGACTTGGTTTGCACCTCTGCAGTTTCTAACGCATACATCCCAGCACACCAGGGTGGATTCGTTCATCTCGGAACAAGCAATTACCTCACCTCAAAATGTCTCCTCTGGGAGGAAGTCGGAGATCTCGAATTCTCTGGCACTCTCTATTTAACATGTACCCTTATCCTGTGGTACCCTGACGTTCTGCGCCTGTTAAAATTGCCTccagtttagttttaaatataaacctgGATTTATCTGAAGCAAGGAATACCTGTAATGTCAGCTTTAAGGTTTTGTGCAAtctgcagaaatataaatataaatatattttgatgtaaTCTGAGTTAGTGGCTGATCCATTTTGGTGCAGTAGCCTCAAAGAATTTCCTATATAAACTAATGTTAAAGTAGTCTTCAAAGATTAGTTATGCACTAAATTCACGAATTATGCAGATTTTTCATTTACTTGGGTAGTTTTCATTGACTATTATGAACACTAAAGGTACAGAGGACTATTTAATGCAGAGTCTTTAAAGCATGATttgaatgttaataataaaaaatcagtTTAATGAAGGTGGTGTAGATTTACATCACACAAGACCTCACGCCTGGTATGTGAGGTGATGTTTGCTGATCTAGAGCTCCACTATTAATAATACTGTGTGAAAACCTGAAAGGGGAATTGCTACTTTAACACACTCATTTTTGGTTTAgaatattcaaattgtattgtctGAATTTGGTAAAGGTGCTTAACATTGTCAGACTTTGTTACAGTTGAAGTTTGCACACTGATCTTTACCACAAACCGGCTTGTCATTTTGATGTTGTATAATTAGGTTTGTGTGGATTGATTGTTTGTGcgtgtatttttattaaattgtccATATATTGGATTGTTACATATCTACCTAAACTCCGgcaggacttttttttcttccttccctTCACAATTAATGAAATAAGAACTGTAAGACACCTTGTAATGATAGTTACAATAATAAGAGATTAATTGTATCAGGAGAGAGAATTTACTGAGTGACTACTAGGACTCTAGATGAGCAGTAGGTGGAGAGACTTTTcgattttaatttttcaatcctttttatgtttttgtaatcaTGCCTAagattttatattgtgtaaaaCTCGTTTTTATATGCAAGCCTCATCAAACCTGTTTCTTTATAATTACAATGTTGTTTAAGCCACATCTACGATAATGGAGAACACCATATGTTTATATCGTATGCCACTGCTTTCACATCTTGATTGCACTTTTTTAAgaataccattttattttccatatggTATCTAAGACTGGTGTCAGTCAGGGTCTGTGGAACCAACCCTTCGTTATTTAAAACTTCAGGTGAAGAAACACTAGGCCTGTTCTAGGTCTGAGACACTACAGCCTCTTCCAGGCGTTttgtgcactttattttcaGTGACCTTTTGAAAACAACTTCTAAGTGCCTTTATGTGCGGTTAATTTCTTAActtcttattattataagaatGAATTACCAGCCCCTCTATTCTGTTCCTGTCAGTCATGTTTTACTGTGGGTGttctaaacattttttctttttgttgttgtgctgggagaattaatgtgttttttgattcattttgaaaagattAACCTCCAATATGCAAGCTTCTGCTTATGACAACTGTGCTGTCAGTTTTATTgtgcctttcttttttgtacCATTTGAGCACttgtattgaaaaataacttcaatgtgtttatttatcaaatactttttctctGGAGCAATTACGCCCCCATTAGTTTTCCCTCCTTGTTGTGGTTTGCTATAATTCATTTAGACtaacataataacaataatagctATCAGAACTATAATAATTAAGATAACACAGCTGCAGTGCAATGAATGTTCAGCTTTTTGGCAGATGCAGTGCTTCAGATTTCAGAAAATTAGGTACTGTGGCCAGAACTGTGGCTAAATGTATCTCTTTTGAAATCCTATTCAGGCTCTGAGATAATGAATGTTCAGAGGTCTTTGCTCTGCTGGAATTGCAAATAATTAAggcatatatataattttacttttcCAGTTCTGACCTCTGAGTGAAGAGTTCCTAACAGCAGCTAACCGATATTGTCGACAGCACtgagtgttttgtgtttgattgtgtACTGTACAAGTATGTTGAAAAGGGCAGGATTATGCAGTTAACATGTAATGGCAATAAACCTtatatttaaagatgttttcaatgtatgtttttctttgcatgaAAATCTCCACAATAGTTGCACGTCGTGACAAATGTTCAAACAGGAATTGAAATGACTGTGGAGAGGATATATCAATTAGGATGGAACGCTTTGAATTTACAAACAACGCATGTATGACGTGAAAGGGAAATTCTTTGATGTGAAATGTAGCATACTGAATCTGTTGAAAAAACACTAACTTTGGGAAGTTAGTGATTAAACATCCATGCACTTCCAGACAAGTGACCTTCACAGTGAAGATCAGGAAGCATGGATGTCAGTTTGAATGTGTCTAGTTTTTCCATGTTTGATATTAATGTATAGGTCAGTTTGATCCACTTTTGAATAAAACACTTTCAGCC

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007378 True 4332 mRNA 0.41 12 16697272 16709296

Neighbor

gene id symbol gene type direction distance location
AMCG00007377 NA coding upstream 5053 16683676 ~ 16692219 (+)
AMCG00007372 NA coding upstream 316056 16347511 ~ 16381216 (+)
AMCG00007371 nap1l4,LOC100702699,LOC106905261,LOC108237555,LOC106959919,LOC103466161 coding upstream 394154 16301868 ~ 16303118 (+)
AMCG00007367 NA coding upstream 430743 16249097 ~ 16266529 (+)
AMCG00007369 NA coding upstream 469249 16225938 ~ 16228023 (+)
AMCG00007381 NA coding downstream 52421 16761717 ~ 16765628 (+)
AMCG00007382 NA coding downstream 82339 16791635 ~ 16799244 (+)
AMCG00007383 LOC108275360,LOC105008177 coding downstream 98968 16808264 ~ 16836323 (+)
AMCG00007385 NA coding downstream 283747 16993043 ~ 17033247 (+)
AMCG00007391 NA coding downstream 573264 17282560 ~ 17286192 (+)
G23322 NA non-coding upstream 286061 16356690 ~ 16411211 (+)
G23294 NA non-coding upstream 401264 16293104 ~ 16296008 (+)
G23263 NA non-coding upstream 539925 16152460 ~ 16157347 (+)
G23189 NA non-coding upstream 630190 16030764 ~ 16067082 (+)
G23154 mob2,LOC108411394 non-coding upstream 943512 15669942 ~ 15753760 (+)
G23432 NA non-coding downstream 258566 16967862 ~ 16968068 (+)
G23433 igf2b,igf2,LOC105904486 non-coding downstream 260509 16969805 ~ 16973419 (+)
G23449 NA non-coding downstream 338634 17047930 ~ 17048318 (+)
G23497 NA non-coding downstream 643276 17352572 ~ 17352790 (+)
G23515 NA non-coding downstream 765667 17474963 ~ 17479749 (+)
AMCG00007379 NA other upstream 34572 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 1317307 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 1409312 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 2207580 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 6084168 10611196 ~ 10613104 (+)
AMCG00007417 NA other downstream 1489322 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 1497782 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 1508434 18217730 ~ 18224936 (+)
G23724 NA other downstream 1580812 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 1857946 18567242 ~ 18570472 (+)

Expression


Co-expression Network