AMCG00007379


Basic Information

Item Value
gene id AMCG00007379
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16624390 ~ 16662700 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007379
ATGGAGAGGAGATCGCAGCACAAGGAGCACCACAACACAAGCTCTGACAAGCCTGCGCCATATTTGTCCAGGGCTGGGAGTGAGCAGGTGATTGCCCAAAGCAGGGGTGAGCGATACACACTACATTCAACAGAGAGGAAGCCCAGCGACCCTCAGCACCTCTCCCTATCCAACTCTGTCTCTTCAGTACAAGAGCAATCCATACAGCGTAAGACTTCGGCCACTGTGGAGTCTTTTAGCCAGGTGCAGAAATCTTTTGAGATACCAGCGGGGGAGTGTGTCCCAGATTTTGAGGAGAAACCACGCCCACTCACTTTGCAGGAGGGGGAGAAAGCCGCCTTCAAAGCCAAGGTGAAAGGGAACCCTAAACCAACTGTGACATGGAAGAGAGAAAGTGGGAGGCCTTTGAAGGAGGGGGCAAAGACCTTTTTCGATAGTGTCAAAAAGGAATATGTCCTGAAGATTAAAAACGTGACTCAGGATGATGCAGACAACTACAAGTGTATTGTCTCCAATGATCATGGAGATAGCATCTACACAGTATCACTCATTATTGCAGAAAATCAGCAGCTGGACTTTAAGAAGATGCTGAAGAAACGAGGTGTCCCTGCTCCCAAGAAGGAGGAGAAGCGGCCCATCACAGAGGAAGAGATGCTGAAGATCCTGTCAGGAGCGGACAAGAAAGACTATGAGAGGATCTGTGCCGAGCACGGTTTCACCGACTTCCGAGGAATCCTCAAGAGACTAaaagaaatgaagaagaaaGTGGATGTAGAGATGGTAAAGGTGCTGAAGCCGCTGGAAGACAAAGAGGCCAAGGCGGACACCAACGTCGTGTTTGACACCATATTGGAGCTGAAAGACCCCAACACCAAGATGATTGTCACCATGAAGGACACTGGCACCTACAAGCTGCAAGTTGGAGACAAGAATCTCTCAGCCAAGCTGAATGTTATAGGCAAGTCCATTCGCGTACACATGAACGAGCCTCTGAAGTTCCTGACCGAGCTGAAGCCCCTGAGGGTGACAGAGCGCCAGACAGCAGTGTTTGAGGTGCGGCTCTCCAAGAAGAGCGACCTGCCCCTGGTGTGGAAGGTTGGGGGAAAGGAGGTGAAGAGGGACGAGAAGTTTGATGTGTCTGTCTCTGAGGACGGGCTCACCTACACCCTTAAGATCAAGGACGTACGGCCAAGTGACATTGGAGAATACAGCATGAGCATTGGTGACATGACGGCCTCCACCCAGCTGTTTATTGACAGGATCCCCATCAAGTTTGCCAGCCACCTGAAGAATGTGCGTGTCAAGGAAAAGGGCAAGGCCAGGATGGAGTGTGAGCTGAGCTCCAAGGATGTGTTTGTTAAGTGGCTGAAGGATGGCCGGGAGATCACCAACAATCCCCGGTACACCTTTGTGCGGGAGGGAAAGAGGGCAGAACTGATCATTGATAACTGTGACCTGGCCGATGATGGGGAGTACGCCATCGTGGCCATGCAGGAAAATGATGCCCATGAGTACGTCAGTTCCTCCAACCTCACTGTGGACGAGCGCTTTGCCACGGTGAAGAGTGGCATGTCAGATGTTCAGTCTCCCACGGGCTCCCCAGCTGAGCTTTGTGTCGTCCTGAATGATGAGAAGGTAGAGGGAGTCTGGCTGAAAGATGGAAAGGAGGTGACGGATATGAGTGGAATTCAAGTGGTGAAGCAAGGAGCTGTGCACAAACTGATCATAAACAAAGTTGGTGACCAACATGAGGGCAAGTACACCTTCAGGGCAAAAGGAGCTGAGAGTGAAGCAGTTTTGGCCATTGCAGACCCTCCAGTTATTGACTCCACTATCCTGGAGGTGCTGTCTGCCCATCCGGTAACTGTGAAAGCTGGACAAACTGCCAACATCAAGATCCCATTTAAAGGCAAGCCACCGCCCAAGGTGACCTGGTACAAAGATGGCATCGAGATGATGGATGACGACCGCACAGTGGTGGAGAAGGAGGGGGACTCTACAACCCTGGTGCTGCACAAGTGTGTGCGAGAGGACAGTGGGGCCATCATGCTGCGACTCAAGAGTGACTGTGGCACAGCCATCGCCAACCTGCACCTCAACGTTGTAGATCATCCCAAGCCCCCCCAGGGGAAAGTGGAATTCCTGGAGCGCACAGGGAAGTGCATCAACATGAAGTGGAAGGCACCACGAGACAACGGGGGCAAACAGGTCACCAGCTTTATCATCGAGAGGCGCCTGGTGGGCAAGAAATCCTGGATCAAGATTGGGGAAGTGGACAGCAAGCTGACCAACTTCAGTACGGACAAAGTGGAGGAGGGCCGCGCTTACCAGTTCCGCATCCGCGCTGTTAATGCAATGGGCGTGAGCGAGCCGCTGGAGACCGAGGAGGTCTTTGCTGGAGAGCCCATTGAGCCCCCCGGGATGGCGTCCCAGCCACAGATTTTGGATGTGACCAAGGAAGCAGTGACAGTGACTTGGAGCCCACCAGCGCAGGATGGTGGAGCCCCAGTGTTGGGTTACATCGTTGAGAGGAGAAAGAAGGGCAGCAGTATGTGGGTCCCGGTCACCAAGGAGCCAGTACAAGACACCAAATACAAAGTGGAAGGCCTGGTGGAAGATATGGAATATGAGTTTCGTGTCACTGGCGTAAACAGAGCTGGGGTGGGGATGCCTAGCTCTTCCTCAAACTCTGTCTTTGCAAAGGACCCCATCCGTGCCCCTGGGCTGGTGAAGGATCTGCATGTGACTGACTCCTCCAACTCCTCCATCTCCCTGGGATGGGCCCCACCAGAGTTGGGGGACGAGCCCTCAGGGTACATCCTGGAGATGCGGGGCGATGACGCCAAGGAGTGGAGCAAGTGCACCAAGATACCCATCACCGGCACCAGCTATACTGTGGGTGGCCTGCAGGAGCGCATGAAATACTTCTTCCGCATCCGTGCCGTCAACGAGGGGGGAGTTGGGGAGCCAATCGAACTGGACAAGGGGGTGCTGGCCATGCCGCCACCCGCTGCTCCGAAATTCGACATCCAAGCCAAGCTGAAGAACCAGATGGAGATACGGGCTGGCACTGCACTGTGCATCCATGTCACCTTCACTGGCTCCCCTCCTCCCATCGTAACTTGGATGAAGGATGGCATCCCAACCAGGGGCAGGGAGGCCATCACCAAAGGAAAAAAGCACTCTCAGTTTCTGATCACCTCATCCCAGCGCTCAGACTCTGGTGTCTACCGCATCAACCTCCACAACGATTATGGAGAGGCCCACTATGACATCAAGGTCCGCGTGGCAGATTTCCCTCGCCCACCTAGCAATCTGCGCCTGGTGGAGGAGGTGCCCAATACCGTGACCCTGAACTGGGACCACACCCCCGATGTGGCCGATGATGGTCATGCCCACTACATCATTATGAAACGTGACGCCAGCACAGCCACCTGGTTCACCGCAGCTGACCGCGTCTACAGCAACAAGTATACCGTCACCGGCCTTCTCCCTGGACGCAAGTACTTCTTCCGGATCATAGCACGCAATGACATTGGAGACAGTGACCCCTTGGATTCCAAGGAGCCCTTCGCTATCGCCAAAGAAAAAGAGCACTTCCACCTGCGCATGAAGGAGTTCCCTGTGAAGGATTTGTCTCAGAAGCCACAGTTCATTGTGCCGCTGAAGGACCACATAGTGAGGCGCGGTCACGACTGTACCATGAGCTGCGCTTTCCTGGCCAACCCCCCGCCCCAGGTCTCCTGGTTCAAGGCCGATGTGAAGATCTCCGAGAGCCCCAAATTCTGGCAGACCACTGCCAATGGAGTCTGCACCCTCACCATCCCCACTTGTAGCTCCAAGGATAGTGGTGAATACACCTTGGTGGTGGAGAACCCTCTAGGCAAAGCCAAGTGCAAGTGCAGCCTGGTTGTCTTTGATAAGGATGACAGGAGCTTGCTGGAGAGCCTGACTGAGCGCAGTGGGAGAAAAAAGCACATCATACCCCCGTGA
>TU29282
TTGAAGGTtgcattgtatttgcattttattttgattaattcacATTCAATGCAGTTTCACTACAAGTAAGGAACAATATGGtccttatttttatatgtatatgtatatgtatgtgtatatgtatatatacacacacacacacatatgttcTAGATTATAGTAAGGAGAATACACACAGGTGAATATTCAGGATAACAAGGCAGAATGTTGTGATATATTCAAGCCAtggtctgaaaaaaaaaaaaagaaaaagatgtcTCCCTGTTACTCACAGCTCCCTGTTTAAAGGCATCTGTTAAAAGGGCAGCACAGCACACGCTCATATTTCTTCTGGCTCAGCTAAAAGGTGTAGTTCGTTGACTTACAaccacaattaaatacattttttttttatagatctGAATAAGAAGTGGCATATCTCAGTGAACACAGCCTGACAGTTCCCAGTCACTGCCATTGCAGgcctggacacagagaggacggCACtctttgacaaaaaaaatagcaaacacAACAGATTGCCTATTTGGGGAATACTGATGCACTGAGTGCTAGATTTACCAGCCTACATCAGATATTTAACTTTCATTTCCAGTACGCCATATCTAACTCTATTGAACGTTCTCTATACTTCTCAATACAGGAAATATCCAAGAAGCTTACAGAAAGAGGGGGTCTCAGTGATTTTACACATTGAtaacaatttgtttgtttaaagtgtaAGAGGAATCAGATAGCCTGTAATGTCCTAAAATAATGAGGTTATGTTGGCAAACTTCAACTCTTTGTTAGGTTTCTCAAGCATCTCCTCATGATCTTTTGCACATGTATTCAGAATACAGGGGGCCTTTTGGTTTAGAATAAAAGCTGTActggattttaaaacaaatccctttTCCCCATTGTGCCAATGCAGATAGGGCTTTCAAGACACTACTAAAACCTAGAATCACTGTGGTCTTTCCTAGTTGAAGGATTTCACTCAGTCTGTTTTATTCCCCAAATGACAAGTTGAATAGCTTAACCATAGGTTTGCCTTTATGGGTCAATATAAAGCCATCAGCTTGCATCTAAGCTTATAACTCTGTTTCGATATATCTTGTGTCATTTGCTGCACATATTTTAGcaaaaaaagtgaaactgaGAATCTGTCTTCAAGAACAGAAGATAAGCTGCACACTTCGACATCTTTTTAAAGTATTCAGAAATGAACTCCAGAACTTAGGAAAGGAAACAAACGCAGGATGTGAAAGAAAATAGGAACCTGAGatgcaattatattatttaattggggGCTATTAGCCTTGAGACCCTACTTGAAAACAAGCTTTTTGATTACACTTGTGACTCTTCCAATTAATTCATACAGGTATAtgcaataatattaaaatatttatgtatacatttttactggTATCTAGCATTTGCTTCTCCAAAGTCGTAAATGGTATTGAGCAGCCAGTGGTCTAAGCATCTGACATTTTCTCAGAAGGCTTTACAAGGTTTGCAAAAGAAAGAGGTAATGTGCCCtcattacttttaaaatcagTCAAGGCACAAGGCCGAAAAATGTCACCACAGTAAAATTACacgagaaggaaaaaaaacaataacaacaaaaaacatcattTCTTGCATTGTGAACAGTAGTTTGTCAGTTCTCCAGTCATTTTAAAGACCCCCGTGATTGAGGTTTGGTGGACTCCTAACAATGAAAGACGATTCCAAGGGAGTGGTGGATGTTGGGGTGTCAGGTGAGCTGGAGTGACCCCACCCTGCTGGTTTCTAGATCCTATAttcatatctatctatctacataTTCATAtc

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007379 True 3993 mRNA 0.54 25 16624390 16662560
TU29282 False 1827 lncRNA 0.37 1 16660874 16662700

Neighbor

gene id symbol gene type direction distance location
AMCG00007372 NA coding upstream 243174 16347511 ~ 16381216 (+)
AMCG00007371 nap1l4,LOC100702699,LOC106905261,LOC108237555,LOC106959919,LOC103466161 coding upstream 321272 16301868 ~ 16303118 (+)
AMCG00007367 NA coding upstream 357861 16249097 ~ 16266529 (+)
AMCG00007369 NA coding upstream 396367 16225938 ~ 16228023 (+)
AMCG00007368 LOC103371360 coding upstream 402354 16190187 ~ 16222036 (+)
AMCG00007377 NA coding downstream 20976 16683676 ~ 16692219 (+)
AMCG00007378 NA coding downstream 34572 16697272 ~ 16709296 (+)
AMCG00007381 NA coding downstream 99017 16761717 ~ 16765628 (+)
AMCG00007382 NA coding downstream 128935 16791635 ~ 16799244 (+)
AMCG00007383 LOC108275360,LOC105008177 coding downstream 145564 16808264 ~ 16836323 (+)
G23322 NA non-coding upstream 213179 16356690 ~ 16411211 (+)
G23294 NA non-coding upstream 328382 16293104 ~ 16296008 (+)
G23263 NA non-coding upstream 467043 16152460 ~ 16157347 (+)
G23189 NA non-coding upstream 557308 16030764 ~ 16067082 (+)
G23154 mob2,LOC108411394 non-coding upstream 870630 15669942 ~ 15753760 (+)
G23432 NA non-coding downstream 305162 16967862 ~ 16968068 (+)
G23433 igf2b,igf2,LOC105904486 non-coding downstream 307105 16969805 ~ 16973419 (+)
G23449 NA non-coding downstream 385230 17047930 ~ 17048318 (+)
G23497 NA non-coding downstream 689872 17352572 ~ 17352790 (+)
G23515 NA non-coding downstream 812263 17474963 ~ 17479749 (+)
AMCG00007350 tsg101 other upstream 1244425 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 1336430 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 2134698 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 6011286 10611196 ~ 10613104 (+)
AMCG00007278 NA other upstream 6659123 9936920 ~ 9965267 (+)
AMCG00007417 NA other downstream 1535918 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 1544378 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 1555030 18217730 ~ 18224936 (+)
G23724 NA other downstream 1627408 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 1904542 18567242 ~ 18570472 (+)

Expression


Co-expression Network