AMCG00007386


Basic Information

Item Value
gene id AMCG00007386
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17150172 ~ 17168177 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007386
tttttcactttttttcctcccatcCAGGGTCCAGATCATGGGGAAAGGCTGCATCACAGCGACCAAGTACTTCCTGTTCTTGTTCAACCTCCTCTTCTTTATTTTTGGAGCGCTGATTTTGGGATTCGGACTATGGGTTCTTCTAGACAACCAGAGTTTCATTGCAGTGCTGCAGGAGTCCTCCAAATCTCTCAAGGTGGGCGCCTATATTCTGATTAGCGTTGGCTCCCTGTCCATGCTGATGGGATTCCTGGGCTGTATTGGTGCCATCTATGAGATCAGATGCCTTCTGGGTTTGtactTCACCTGCCTCTTCCTGATTCTCATCGCTCAGATCACCGCTGCCGTGCTCATTTACTTCCAGCGTGACTTGCTGAAGAATGAGATGTCAACCATTGTCAATAAAATCATTGTGGATTATTCGGCTAAGAACACCAGTACGGAGCAGGCATGGGACTACATCCAGAAAAGCATTCACTGCTGTGGCTGGACAGGACCAGGGAACTGGACAGAGAACATGATAGTGAAGAATACAAGCAGATCTCTGTACCCCTGCTCCTGCCGTAACTACACTATCACTGCTGTCTCTGGAACAGAGACTGATTTTGGTTTCTGTCTGGCCACCGAGCCCCACAATTGGCCCGTTTATACCACGGGTTGTGTTGCAAGTGTGGAGAGCTGGCTCTTCAACAACTCTGGAGTTATTCTTGGAATCTGCATCGGAGTGGCGGCCATCGAGCTGCTGGGCATGATCCTGTCCATGTGCCTCTGCCGGAACATACACCAGGAGGACTACACTAAAGTACCAAAATACTGAAGACTGTgggggcaggggagggggagggggggcaggtaTACAACCTATACCTTGTGCCAATCCACCAAGTCTGTTTGGGCATTCCAGAGTTACATTTCCTGTTTCAGTCCTGGTTAGAAAACTAATAAAGAGacttctcttgctctctctctgtctcaaaGGCTTTAAAAAACCCAAACCCATGTTCCTGTTTGGAATATCGAAATGACAGTTCTGACTCCTGTTTTGAAATTAagctataaaaatatacaatttcctTCCCTTTTTGGAAGGCAAAAGTGTCAttgcagacagagagggaggaagacCACCTTATTGTCATCACGTCTACTCCCATAAACCTttggaagaataaataaatacaattaaaaacatttatatatgtatagatgtagttttttttttttttttttttttttctggaagcGCTTGCCTGTTTAGTCTCCTTTTCTAAGAGCACTTTAGTAAATTGTCTTAGATGTTGACCAGTGATGCAAAGACTGGTCAGGACTGGGTTTGTGAATTGGGCGGGGGGGGACACAATGCTTCACctgatgttttgtaaaatgtctttctCTGGGTCcctttatgttttcattatttgttgGCATACAAAGTGCAGAAAGAAGGGATGGAGGTGGGGGGTAGTGAGTGAACCATGCAGGGCTATAGCATGCCTTCTGCGGAGTTTAACCTTACGTGGGATGCTGGGTGAAATGCCCTCTCCACGTTTCAGTTCGAGCTGGGGGGAAGAAAGCAATCTGAAATGGGTCTGATTGTCCAGGAGAGCTGGCAAAATATGAAAGCTCGCTGTTGCTTGATTCTTACCAGTGCAATGTTATCATTTAAACTACTCTTTCATTGAAGTCATAGAGGGACCTGAAACGAAGGGCCATCTCGACCTGCTCAGACTGTGTTACAGTGTCTTAGCATTGCTGTTTAGAATCCTGacaattttgacaatatttgctttatttttagtcttGGTTTCTAAACTTTAATTTTACAAATCCCTTTGACCTACTTTGGCCTGACCCGTCTTTGAACCAGTTAGATCTTAAATTAGTTCTGcatgtcttttgtgtttttcttgttgtggttgattattattttttaatacatgtatatattactTCAGTTAAGAAATgatgagcattttttttttattatgtgcattattttatatagggGAAAAAGTCATTGTTGGGGGgcatggaataaaaaaaaaaaagtttctgtaTTCTTCTACAGTTTTGCTTCCGAATTATGAACAGTTGTTGGTTAGGGAACAGCAACTGTCAGTGGAAAAACGGATTTGTGAGCACTTCCTTTTACTAGCGGTCTGTTGATTTAAGTAACCATGATAAAATGCAAATGGGAATTATTCCAGtgaaatatttatgattttCAAGAGCCAGCCCAAATCAATTCCACACCCATTTCCAGACTCCACACCACACCCATATTTTCAGACTTTGTCCATCAGGTTTCTCAAGTTAATTATTGACACTTTGCAACACACTTAACTGTATGTACAGTTTattacagatttgtttaattaacaaatctTCATCTAACATTCCCCTTGGGTTAAAATTCAAGGGGGTTCATTGCTTTAAAGTTTGAGGACAAAAGTAAAAGCGTACCATATGCTTTGTCCTGTAGTTACCAGTCTTCCCGTCCTTTTATGATTGTAGCATTTCAGTTTCCTACACTTAATAAGATATTTCTGGATCTCTGAGGAGTTTATTGTatactgaataaaatgttaagaACATCAAACTGAAATGAGACCATTCTTGAAGCCTGCTTATTTGATCATTGTGTGAGCTCTCATCCAATAAAAACTGttctttacaagaaaataaaactttgaatTTTGTACGATAGTCTGTATTGTATTCAAGTGTGGGTAAGCTTTGCTCTGGTTCTTATTCAACTGAATTCCCTTCACGCCTTAAAGATATATAAAGGGTATATCAAGAATCTGTGGAATTGGAAAGCTTTTCCATACAGTAATCTGTTCAGATATGGAGCTAACGTTTGTATAAAGTTTTTTTGTAGGGTTGCaaatttctttatttgttggAATATAAAAACGCTTctgtccatgttttattttaagaaatggaTACAAGGTTCTAGgaataatgtgtaaatgttaGGGGTCAATTTTAAAACCATGTGCATTGTTCTTTAAGAGTAGTTATTTCAATAAAGTGAGCTCACCTTGGATTTTGTGTATCATTACTTAATTTCAAGAGTGAACCCATTTACACCAGTCTAGTCTTTGGAGGGGAGGTggtcaattaaaatgtttgacttGGTAAGTa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06509 KAI1, CD82, TSPAN27; CD82 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007386 True 3150 mRNA 0.40 8 17150172 17168177

Neighbor

gene id symbol gene type direction distance location
AMCG00007387 tspan18 coding downstream 91254 17049716 ~ 17058918 (-)
AMCG00007384 NA coding downstream 171399 16971302 ~ 16978773 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding downstream 417327 16712092 ~ 16732845 (-)
AMCG00007376 tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565 coding downstream 479537 16665551 ~ 16670635 (-)
AMCG00007373 b4galnt4 coding downstream 682485 16455533 ~ 16467687 (-)
AMCG00007388 NA coding upstream 18661 17186838 ~ 17190438 (-)
AMCG00007389 NA coding upstream 32683 17200860 ~ 17237726 (-)
AMCG00007393 NA coding upstream 159163 17327340 ~ 17348888 (-)
AMCG00007392 kmt5b,LOC102794872 coding upstream 184935 17353112 ~ 17371256 (-)
AMCG00007399 NA coding upstream 353612 17521789 ~ 17530599 (-)
G23448 NA non-coding downstream 111187 17032928 ~ 17038985 (-)
G23447 NA non-coding downstream 118490 17031385 ~ 17031682 (-)
G23442 NA non-coding downstream 133906 17016022 ~ 17016266 (-)
G23441 NA non-coding downstream 134501 17015338 ~ 17015671 (-)
G23440 NA non-coding downstream 140125 17009789 ~ 17010047 (-)
G23487 NA non-coding upstream 143792 17311969 ~ 17314094 (-)
G23532 NA non-coding upstream 307041 17475218 ~ 17479751 (-)
G23539 NA non-coding upstream 319943 17488120 ~ 17488416 (-)
G23548 NA non-coding upstream 338332 17506509 ~ 17509199 (-)
G23550 NA non-coding upstream 343347 17511524 ~ 17511794 (-)
AMCG00007375 NA other downstream 528267 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 804592 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 836140 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 3116960 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 3204107 13945643 ~ 13946065 (-)
G23661 NA other upstream 887293 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1034282 18202459 ~ 18208020 (-)
G23838 NA other upstream 1608183 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 2623524 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 2746969 19915146 ~ 19923153 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012839 cd82b coding NC_007129.7 CM002902.2 27571448 ~ 27626391 (+)