AMCG00007387 (tspan18)


Basic Information

Item Value
gene id AMCG00007387
gene name tspan18
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17049716 ~ 17058918 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007387
ATGACCCCATGTTATAGTAACCAGTCCTTTTTCAAAGGGGCTCGGGCGAGGCTGAGAGCAGAAGAAAGGACCATGGAGGGGGACTGTCTGAGCTGCGTCAAGTACCTCATGTTCGTCTTCAACTTCTTCATCTTCCTGGGGGGCTCCTTCCTCCTGGGGGTGGGGATCTGGGTGCTGGTGGACCCCACGGGATTCCGGGAGATTGTGGCAGCCAATCCGCTGCTCTTCACCGGCGCTTACATCATCCTGGCCATGGGCGGCCTGCTGTTCCTGCTGGGCTTCCTGGGCTGCTGCGGGGCCATCCGCGAGAACAAGTGTCTGCTGTTGTTTttCTTCATGCTAATTCTCATCATATTCCTGGCAGAGCTTGCAGCCGCCATCCTCGCCTTTATATTCCGAGAGCATCTGACCAGAGAATACTTCACAAAGGAGTTGAAGATGCACTATCAAGGATATAACAACACTGATGTCTTCACTGGCACGTGGAATGCCATTATGACCACATTTGACTGCTGTGGGGTGAACAATCCCGATGACTTTGAGGAGAGCCTTTTCAAACTCCTCAATCCTGATGACATGGTCCCAGAAGTCTGTTGCAAGAGGAACAATCACCCTGGAGATGGGACCTACATTAGCAGAGAGGAGTGCCTCATGGGTAGCATGCTGTTCCGCAACAACAAGGGATGTTACTCGGCTGTTGTGGACTACTTTGAGACATACATTTACCTTGCTGGAGCTCTGGCCATTGTGGTTCTGACAATTGAGCTTTTCGCCATGGTGTTTGCTATGTGCTTGTTTCGGGGAATCCAGTAG

Function

symbol description
tspan18 Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
Tetraspanin-18

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17353 TSPAN18; tetraspanin-18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007387 True 813 mRNA 0.52 8 17049716 17058918

Neighbor

gene id symbol gene type direction distance location
AMCG00007384 NA coding downstream 70943 16971302 ~ 16978773 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding downstream 316871 16712092 ~ 16732845 (-)
AMCG00007376 tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565 coding downstream 379081 16665551 ~ 16670635 (-)
AMCG00007373 b4galnt4 coding downstream 582029 16455533 ~ 16467687 (-)
AMCG00007374 abtb2b,abtb2,LOC107558307,LOC107675288 coding downstream 605603 16385385 ~ 16444113 (-)
AMCG00007386 NA coding upstream 91254 17150172 ~ 17168177 (-)
AMCG00007388 NA coding upstream 127920 17186838 ~ 17190438 (-)
AMCG00007389 NA coding upstream 141942 17200860 ~ 17237726 (-)
AMCG00007393 NA coding upstream 268422 17327340 ~ 17348888 (-)
AMCG00007392 kmt5b,LOC102794872 coding upstream 294194 17353112 ~ 17371256 (-)
G23448 NA non-coding downstream 10731 17032928 ~ 17038985 (-)
G23447 NA non-coding downstream 18034 17031385 ~ 17031682 (-)
G23442 NA non-coding downstream 33450 17016022 ~ 17016266 (-)
G23441 NA non-coding downstream 34045 17015338 ~ 17015671 (-)
G23440 NA non-coding downstream 39669 17009789 ~ 17010047 (-)
G23487 NA non-coding upstream 253051 17311969 ~ 17314094 (-)
G23532 NA non-coding upstream 416300 17475218 ~ 17479751 (-)
G23539 NA non-coding upstream 429202 17488120 ~ 17488416 (-)
G23548 NA non-coding upstream 447591 17506509 ~ 17509199 (-)
G23550 NA non-coding upstream 452606 17511524 ~ 17511794 (-)
AMCG00007375 NA other downstream 427811 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 704136 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 735684 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 3016504 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 3103651 13945643 ~ 13946065 (-)
G23661 NA other upstream 996552 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1143541 18202459 ~ 18208020 (-)
G23838 NA other upstream 1717442 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 2732783 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 2856228 19915146 ~ 19923153 (-)

Expression


Co-expression Network