AMCG00007404


Basic Information

Item Value
gene id AMCG00007404
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17701160 ~ 17729279 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007404
ATGGCCAGTGCGTCTCCCACAGTGTACATCACACTGTTAGTGTTGCCGGCCTCTCACTCACCAGTGAGAGAGAGTAACTGGAATAGCTGCCGTGAAGATGGCGAGGTGAACACCGACTGGAACAAGCATGATGACCGGCTGATGAAGGCGGTGGAGCGCGGCGAGGTGGACAAGGTGGCAACTGCGCTCACCAAGAAGGGCATCATCCCCACCAAGCTGGATGTGGAGGGCCGCTCAGCGTTCCACCTGGCAGCGACCCGTGGACACCTGGACTGTCTGAACCTCATTCTGGGCCACAATGTTGACATTACTGCTACCGACGCCACAGGTAAAAATGCCTTACACCTGGCTGCGAGGAACGGACAGTCCCTGTGTGTGCAGAAACTGCTGCAGCACAACTGCCCCGTGGGGAATGTGGACCTGCAGGGGAGGACTGCTCTTCATGATGCAGTGATGGCTGGCTGTGCCTCCAGTGTGAAGCTGCTGTGCGACAGTGGAAGCTCTGTCAATGCTAAAGACTTTGATGGTCGAACACCGCTGGTCCTGGCCACCCAAATGTGCCATCCTAAGATCTGCCAGCTATTGCTGGAGCGTGGTGCTGACATCTCCATTCGGGACAAGCAGAACAAGACTGCGCTCATGCTGGGGTGCGAGTACTCTTGCAGGGAGGCAGTGGAAGTGCTGCTGCAGAGTGGCGCCGATGTCACCGCCAAGGATGTCTTCGACCACGACAGCTACCACTATGCCCGGCTCGGCAAGGACCCCCAGCTGGTGGCGGTGGTCAGGGCCGCGCTGGATAATGCCACGAGAGCAAAGGAAGCTGCCAAGGTGGAACACAAGCACATTCAGTCcatggagaagaagaagaacgcCGAAGCTGAGGCCAGTATACGGGACCAGTTTATAGAaGAGCTGCAGGTGGAAAATAACGAGCTGAAGGATAAACTGAGAAAGTTTCATCAGGAGCAGAGGATCCTGCTGGACAGAGTCAGTGGGCTGCAGCAGCAACTCAATCAGGAAAAGAAGACTGTGGAGGAACTACAGAAGGAGTTGGCAGCAAAAGACCAGGAGAAGGACGAGAGTGTCAGGGCCATGGAGACTGTCAAGGTCCAGCTGAAAAGCCACCTGGGCGATTATTCTGGCCAGTCTGTCATTAAAGGAAAAGACAACGTACTGACCAAACAGTCTTATAGCCTGGACTCGGCACAGATTCTGCAGGCAGCCCCGCCGTCGCACTCGGTATCCCGGCCCTTGGAGGTTTCCCGGCCATACCAGGCCTCCGGGGGTGAGACCGAGATGCTACGGCGTATGCAGGAGAAGTTGGAAGAGGAGGTGAGCCGGCTGCAGGCCCAGCTGGTCAGTAAGGAGCAGGAATGCCTGGAGCTGCAGGAGAGCTGCGATGCTGCCCGCCGCGATGCGGACAGGCAGGTGTGCGACATGGAGCAGGCACTGAGCGACGTGCAGAAGAGGATGGTTGACTCGGAGTCCAAGGTCAAGCTGCTGCAGGCCCATGTGGTGGCCGTGAAGGAGCACCTGAACAGCCAGCAGCTAGAGGAGCTGAGGGGCCAGCTGCAGGATGTCAAAGCCAAGTATGAGGGTGCCTCGGCCGAGGTGGGCCGCGTCCGCAACCACCTGAAGCAGAGCGAGAAGGCCCTGGAAGAGTACAAGCAGAGCGAGGGCAGGCTTGCGGAGGAAGTAGATAGGCTTACCAGGGAGCTAAACAAGtcgagggaggagagggaggatgCGGCTGGCCGGCTGATGGAGCTGGAAGGCCTCATGAAGGAGGTGGAGGACAAGTTGGTCACTGCTGTGCCCGCCGAGAAGTTTGACAACATGAAGAACCTGCTAACAAACGCTCTGGACGAGAAGGAGAAGCAGATGGCCGAGCTGAGGGAGGATTATGAGCGGGCCCTGGAGGATGCAGCAGAGCTGCAGAGGGAGCTTGAGGAGCAGAAAGCTGAGGTGGAGAGGCGTGTGCTCAAGGAGGAGCACCAGAGGGTGAGGGCGGTGCTAGAGGAGCAGACAGCCAGTCTCAAGGGGAAGCTGGCCGAGGTCACAGCTAAGAGCCAGGCTCTGATAAAGGAGGTGGAGCAGAGCCAACAGGACAGTGCGCTGCTAAGGGAGCAGCTGAAGGAGCTCAACAGGAAGATGCAGGAGCAGCACGTGCCGCTGAAGACTCACCTGGAGGTTAAGGAGTCGCTGGGCCGTGGCATGGAGGAGCTGAACCAGAAGCTAGCACAAGCCGAGTGGAAGAGCAGCGAGATGGGAGCAGAGTTGCAGAAGCTCCAGGTGGAGAAGGTCAGTCTGTGCGAGAATGTCACTCACCTGCAGGCCCAGTATGTGTCCCCAGAGAGGTTCAAGGAAGAGGTGCACAGTCTGGAGGCTCGCAACGTGGGTCTGAAGCAGGAGCTCCAGGAGCTTCAGAAGAAAAGCCGGGAAACGGAAGAACGGCTGGCAGAGGTGACCTCTGAGAACAGTGCCCTGAGGAAGAGCTTGCAGGAAGAGTATGTGCCGCAGGAAAGGTATGAGGAAAGTAGAATGCAACTGAGTGTGGAGTTGGAGCGTGCCAATGGAGAGTTCTCCAGGTTGGCAGAAAAGTGCAGAGAATCTGAGGAGGAACTAAAGAAAGTGAAAGAAGGAAACGTAAAGTTGGAAGAAAAGCTACAGGATGTTGAAACAAATTTGGAAAAGGAATACATTAGCCTTGAAAAGCACGAAGCAATAAGAAACTCATTGAACAACACTGTTTCTGACTTGGAGTTCAGGGTCAAGGAGGCCACAGAGAAGTATGAGTCCATGAAGGGGGAGACAATAAGGCTACATAAGGAAATTGAAGCGCAGAAGAAGGAATTGGACATGATACAGGCAGCTATTCAGTCCAGGTTTGTTCCACTATCTGTCattgaggaaaaagaaaattctTTCAATGCAAAGCTGAAGGAACTGACTGGGCAGCTGGCAGAGGTGCAGCAGAGGTACAGCCAGGTGAAGGCAGAAGGAGAACAGTACAAGCAAGAGAAGGAGAAGCTGAAGCAACTGGCAGATCTGGAGCAGCAGTACAGAGATGTGACTCTGCAGAGGAAGCAGCTGGAGGAGCAGAACGCGCAGTGCAACATGGAGATGCAGAGCCTGCAGAACCGCATGGATACGGAGTGCGTGCGGATAGAGCAGTTCGAGGCCGTGAAGCAGTCCCTGAGCAGCAGCCTACAGCAGGCCCAGGAGGAGTGCCAGAGGGTCAGGGAGGCCTGCAGGAGCCAGACCGAGAAGGTCAGTGTCCTGGAGAGGGAGCTGCAGAGCCGGAGTGCAGAGACGGTGCTTCTGGCAGAGCATGTCCGCGTCAAAGAGGGCCTGGAGAGGGAGGTGTCCCGTCTGAGGGAGGCGctcagagaggaggaggagaggagtgtAAACAGGGCAGAGGAGGTGGGCTCCCTGCAGATGGAACTGCTGAGCGCCTCCAGAGCCGCGGAGGAGGCCCAGGGCCGGGAGTCGGGGCAGGCCCAGGAGCTGCGGACTGAGAAGCAGAGGCTGGAGGCGGAGGTGCTCATTCTGGGTCAGCGCCTGTCCAACCTAGGGGAGGGGTACGAGGAGCTGACCCGAGAGGCTTCGCGCGCCAGAGAAGGCGAGAGGAGGGCGCAGAGCGAGAGTGAAACGCTGCAGGCCCGGAGCCTCACGGTCCAGTCTGAGATCACAGAGCTGAAGGAGCGCTACGACAAGTCCCTGGCCACCATCGGAGACCTGCAGAGAAGAATCCAGGCGTCCTCCGGGCAGACAGAGGCCAAAGACAAGAAGATCTCGGAGCTGCTGGCTGAAGTGGAGAGGCTGAAGCAGGCCCTGAACAGCCTGGCCATACGATCATACGGTCCCCAGCCCAGCAAGCGTGGTGAAGCCCTGCAGGCCCAGGTCAAGAGCCTACAGCAACAGCTGGCTGGGCACATGGATGAAGATGTGCAGGCTGCTTTGCTGCAGATCATCCGAATGAGGCAGGAGTTTGTGTGCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007404 True 4005 mRNA 0.57 19 17701160 17729279

Neighbor

gene id symbol gene type direction distance location
AMCG00007403 morf4l1,LOC107596963,LOC107686360,LOC107738770 coding upstream 25606 17659682 ~ 17675554 (+)
AMCG00007402 LOC105013640 coding upstream 48348 17651631 ~ 17652812 (+)
AMCG00007400 NA coding upstream 117720 17578259 ~ 17583440 (+)
AMCG00007395 NA coding upstream 129610 17560978 ~ 17571550 (+)
AMCG00007396 ppp6r3,LOC107714032 coding upstream 190198 17492509 ~ 17510962 (+)
AMCG00007407 anp32a,LOC107700478,LOC107740437,LOC107557695 coding downstream 324816 18054095 ~ 18058956 (+)
AMCG00007408 NA coding downstream 332955 18062234 ~ 18063493 (+)
AMCG00007416 NA coding downstream 439171 18168450 ~ 18198526 (+)
AMCG00007415 LOC104955851 coding downstream 480349 18209628 ~ 18216895 (+)
AMCG00007428 NA coding downstream 668068 18397347 ~ 18402499 (+)
G23540 NA non-coding upstream 209399 17491445 ~ 17491761 (+)
G23538 NA non-coding upstream 213760 17487117 ~ 17487400 (+)
G23515 NA non-coding upstream 221411 17474963 ~ 17479749 (+)
G23497 NA non-coding upstream 348370 17352572 ~ 17352790 (+)
G23449 NA non-coding upstream 652842 17047930 ~ 17048318 (+)
G23610 NA non-coding downstream 91568 17820847 ~ 17821117 (+)
G23604 NA non-coding downstream 92487 17821766 ~ 17823337 (+)
G23628 NA non-coding downstream 175279 17904558 ~ 17904949 (+)
G23631 NA non-coding downstream 213497 17942776 ~ 17943110 (+)
G23634 NA non-coding downstream 223272 17952551 ~ 17953275 (+)
AMCG00007379 NA other upstream 1038460 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 2321195 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 2413200 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 3211468 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 7088056 10611196 ~ 10613104 (+)
AMCG00007417 NA other downstream 469339 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 477799 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 488451 18217730 ~ 18224936 (+)
G23724 NA other downstream 560829 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 837963 18567242 ~ 18570472 (+)

Expression


Co-expression Network