AMCG00007407 (anp32a,LOC107700478,LOC107740437,LOC107557695)


Basic Information

Item Value
gene id AMCG00007407
gene name anp32a,LOC107700478,LOC107740437,LOC107557695
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18054095 ~ 18058956 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007407
CGCAAGTCCAGCGCTGCTCAGACTGGGTGACTCAATTAAATACAGGCGAGCTCCCACAAGATGGACATGAAGAAAAGGATTCATCTAGAGCTGCGGAACAGGACGCCGTCAGACCCGCGGCGGCACAGGCGGCACTGCCGAGCGCCCCTCGCCCGGCGCGGCGCTCCTCCAGCGGCTGCGAAACGCGCTCGACCCGCTCGTGTCTTCCGAGGGATTCGCCGGACTCGGACGGAAACGCACGAAGCCGCCCGGCGCGCTGTTTTGTGATCGCTTTCGAAACgctgtttttttggggggggatcCGAGACGTATCTAGGACAAGCCGCCATTTTATCAAGCAACAAAGGCGAAAATAGACCGTTTGTAGCGAATGACACGGATGAGCCGGCGTGGTAACCGCTGCGGTTATAGGACGTGTTTAGCTCGATGTATTAAACCCATTTTAGGTATTTATTGCCTTTTAAAGCGCAAAACGCATTTTCTGTTGATGGTGTGGACAATCACCGGCAGACCCAGCGATCACGCCGCCCCCTCCTTTGCGCGTCCAGTGCCTCCCGCACGGCGTCGTGTCTCCGTGTTTTGGGCTTTAAACCGAGCTCTCATTGGGAGGAAAGTCCCATAATCTCGGTGTTACAGTGGGCATTGCCAGGGGGTATCCGGCACTCAAAAACACCGTGTAGTCAGCCATTTTGTCTGTGTGGCGTTGTCAAATTGGTTGAATGAAAAGGTTTACCCCTATAAATGTGAACTGGGTGGCTCaaatcaatcatttatttatttttaaatcgtGGTGTTGAAAGATATACCAAAGCAGGCGTGTTTTTGGCTGGGCTGCGGCCGTTTAttgctgtgctgggttgggaaGTAAGTTGCGGGGCTGAACAGTTGGGCCGGCGGGGCTGTGCGGGGCTGTGCGGGTGTTTACCTGTGGGCTGTCCACTCGTGTGACGGGGCTCAGGTGTGCAGACGCGACTCCTGCGTTTTCAGCAGCGCCGGGGCTGATGTTTACAGTTTGCAGGTATAAATGGCGCGTCGTGGCTCTAATGTAACTGGACGCGGTTGGTTCTGGTGCTTCTCCGGGAGCCGCTGCGCCTCGGCCGGGCGGCGCTGCAGGGGTGGCCCGTGGGCGAGCACCGCGTGGGGGCCGCAGGCCGGAGTTTGACACTCGAGTTTTCCTGTGGATGTGAGtgaacttaattttttttgtgaatttaatttttttttttttacttaattggaTTACAGGATTGTGTAGGTATAacgtgtccgtgtgtgtgtgtttatttatatatatatatatatatataatatatatgttcatGGAGAGTTTCTCAATGCTCTGCTGGGACCCTGTTAAAATCTTAACAGCTCTCAGATAGTCTGCATTTATCTAGGAGCCCAGTGTGGGTTACCTCTGCTGCACAATATCTACAGGGGTAACCTTGGGCCTGAGGTTCAGTGCTCAACCTTGCAAAAGCTTTAGATAATGGTTTCAGTCTGGGCTGTGTGGTGGTTCTGAGGGCAGGATGGGGACTAGAGTTCCCCGCCTGGCTGGAGGAGCCTCCTGGCTACGCACTGTGTGCCACACTGCCTTGAGTGGATGGGACCATCTCGGAAGGCATAGTtatcagtgtgctgtgctgctgggctctttgctctccctctctcctgtcctTTTGTATGCCTGTCtcaccacaaacacaaaaactgcaGGGGTTGATGGctgtctatttattttctttcttgagtAATATTTGGAATATTATGTTCGAATACATTTCTGTTGGTATATAGGAGGCTTTTTGTGGCCATCTGTAAGTTTCATTGCATAGCAGAGGGGTCCGGTCCACATGTTGCAGCCTGCTGAGCTCCTGTGACTCCCAAGACCAGCAGCAGGGTGTAATGTGGTTGTCAAAATTATTTGCTAAATAATTGCATTGAGGTATGTATCCGGCTGAAACGAAATAAATGAAAACCGTTTTTGAAATGCTCGTTAAACCTGAAACAGATCGGCCTGCTGTGCAGCAGGGTTTTCACGCAGTTAGAATGAGTGGCCCaggtgctcagtcttgccaggAAGTGTAGCCATGGTGCAAAGGATTTCTTATGGTCATTGCCAATGGTGCACATCTCTCCTTGTGCCTGATACCCAGGTGTGAGGTATGGAGCATTCTGTGACGAAAATGGTTTCTTGGCTGTGTAGGAGCCGAGTGCTGGGGAATGGGACAGGTCCCCGTGCCGTGGTGCCAGGACAGTAACACCCTCTATGTCCTTTGTAGTTTAGTTGCAGCATTCAGAGTCGCTTCAGTAATACAGCTGGGAGCAGACAGTTGGGCTAAGTGTTTTTTAGTTGCAATAGGAGTTTGGGAAGTGCtgtccaggtgtgtgtgtgtgcgtgcgtgcgtgtgcgcgtgtgtgcgtgcgcagTCAGGAGTAGCCTCTAGGATATCGAGCAGAGCTGCAGCGGATTGAAATGGCAAAGACCGCTGTGAATACAATACGGAGACTGGTGTTAATACCATGTTCGGTTCTGGCAAAATTGCCATTGGAAGCCAGCTTTGCCGGGCCCCTGTCCTGGAGAGCACTATGCCTTCCAAAGAGCACTTCCTGTTCAGGAGGCCCTGCTGATGCGTGTTTCATCCCAGGCAAAGTACACTCTGTGTCAAAAGTtggaaacaacatttatttggCTCAATTTCAACTTTGCCACAGCAAACCACAGTCTGACCTTCTTCCAGCACTCTCTGCACATAGGGATGTGCGGCTAGGTAGACTGTTACAGGTCCGATTTGTGGCTGCATGTGTTCTCTCAaggcacattttaatttgctttcacTTAGATTTTACTTCATATTGATGGTGTTAACTTTCTCCCCCCcgacccccacccccttcactTTTTTCAGGTCAAAGAACTTGTTCTAGATAACTGTCGTTCAAATGAAGGTAAAATCGAGGGCCTCACAGATGAATTCGAAGAACTGGAATTTTTAAGCACAATCAACGTAGGCCTAACGTCGGTGGCGAACCTgcctaaattaaacaaacttaaaaagCTCGAGCTCAGTGACAACAGAATCTCAGGGGGGCTGGAAGTTCTGGCAGAGCGATGCCCAAACCTCACACACCTCAATCTCAGCGGCAACAAAATCAAAGACCTCAGCACAATAGAACCTCTGAAAAAATTGGAAAACCTGAAGAGTTTAGACCTGTTCAACTGTGAGGTGACAAACCTCAACGACTACCGAGAGAATGTCTTCAAGCTGCTGCCTCAGCTCACCTACCTAGACGGCTACGACAAGGAGGACAAGGAGGCGCCCGATTCAGACGCGGAGGCCTACGTGGAGGGGCTGGacgatgacgatgatgatgaagaCGGTACAAGA

Function

symbol description
anp32a Predicted to enable histone binding activity. Predicted to be involved in nucleocytoplasmic transport and regulation of apoptotic process. Predicted to be located in endoplasmic reticulum and perinuclear region of cytoplasm. Predicted to be active in nucleus. Orthologous to several human genes including ANP32A (acidic nuclear phosphoprotein 32 family member A).

NR:

description
PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X2

GO:

id name namespace
GO:0006913 nucleocytoplasmic transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007407 True 3386 mRNA 0.50 4 18054095 18058956

Neighbor

gene id symbol gene type direction distance location
AMCG00007404 NA coding upstream 324816 17701160 ~ 17729279 (+)
AMCG00007403 morf4l1,LOC107596963,LOC107686360,LOC107738770 coding upstream 378541 17659682 ~ 17675554 (+)
AMCG00007402 LOC105013640 coding upstream 401283 17651631 ~ 17652812 (+)
AMCG00007400 NA coding upstream 470655 17578259 ~ 17583440 (+)
AMCG00007395 NA coding upstream 482545 17560978 ~ 17571550 (+)
AMCG00007408 NA coding downstream 3278 18062234 ~ 18063493 (+)
AMCG00007416 NA coding downstream 109494 18168450 ~ 18198526 (+)
AMCG00007415 LOC104955851 coding downstream 150672 18209628 ~ 18216895 (+)
AMCG00007428 NA coding downstream 338391 18397347 ~ 18402499 (+)
AMCG00007437 lctl,LOC105892386,LOC102794608 coding downstream 516886 18575842 ~ 18584276 (+)
G23634 NA non-coding upstream 100820 17952551 ~ 17953275 (+)
G23631 NA non-coding upstream 110985 17942776 ~ 17943110 (+)
G23628 NA non-coding upstream 149146 17904558 ~ 17904949 (+)
G23604 NA non-coding upstream 230758 17821766 ~ 17823337 (+)
G23610 NA non-coding upstream 232978 17820847 ~ 17821117 (+)
G23696 NA non-coding downstream 143506 18202462 ~ 18204361 (+)
G23780 NA non-coding downstream 527218 18586174 ~ 18586536 (+)
G23781 NA non-coding downstream 529060 18588016 ~ 18588690 (+)
G23782 NA non-coding downstream 529910 18588866 ~ 18589068 (+)
G23791 NA non-coding downstream 564965 18623921 ~ 18625059 (+)
AMCG00007379 NA other upstream 1391395 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 2674130 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 2766135 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 3564403 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 7440991 10611196 ~ 10613104 (+)
AMCG00007417 NA other downstream 139662 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 148122 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 158774 18217730 ~ 18224936 (+)
G23724 NA other downstream 231152 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 508286 18567242 ~ 18570472 (+)

Expression


Co-expression Network