AMCG00007409 (LOC105906560,LOC106562708,LOC106562601)


Basic Information

Item Value
gene id AMCG00007409
gene name LOC105906560,LOC106562708,LOC106562601
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17980242 ~ 17991860 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007409
tctgacctgtgcCCTGTCTGCTGTGCTGTTTAGGTTGTCTGTGACCATGCGGTGCCTGGCGGCTCGAGTGAACTACAAGACCCTGATCGTGATCTGCGCGCTCTTCACCCTCATCACAGTGCTACTGTGGAACAAGTGCTCCAGCGACACTGCCCTCCGCTTCCCCCGGGACCCCAGCCTGCTGGACATCAGTTTCCGGGGAGTTGGGTTAGAGAAGCACACAGCAGCTTCCGAGAGCGCCGGCGTCAACCCTCTCCTaacaaagcagcagcagcagtctgaGGAGGCGTCGCCACAGGAGCAGCAGAAGGCACCCCCTGTGGTGGGAGGACTGAACAGCAATGTCAACAAAGTGCTGGGCATCAAGTATGAGGAGATTGACTGCCTGATCAACGATGACAGCACTGTCAAGGGGCGTCGGGAGGGCAGCGAGGTGTACCTGCCCTTCACCTGGGTGGAGAAGTACTTTGAGGTGTACGGCAAGATTGCCCAGTACGATGGCTACGACCGGTTCGAGTTCTCGCACAGTTACTCCAAGGTGTATGCCCAGCGTGAGCCCTACCACCCTGATGGTGTGTTCATGTCCTTCGAGGGCTACAACGTGGAGGTGCGCGACCGCGTCAAATGCATCAGCGGCGTGGAAGGCGTCCCCTTGTCCACACAGTGGGGGCCTCAGGGATATTTCTACCCCATCCAGATCGCCCAGTTTGGCCTGAGTCACTACAGCAAGAACCTGACAGAGCGCCCCCCCCACGTGGAGGTGTACGACACGGCAGAGGAGCGCGACGGCCGTCCAGGGGGCTGGACGGTGCCGCGCGGCTGCTCTCTCACCACCGTCTATGACAAGAGCCGTGCCACCAACGTTCGGCAGTTCAGTGCACCAGaaaCATCGGAGGGGGTGGCCCTGCCCCTGGGCAACATCAAGGACTTCATCCTCTCGTTCGATGTGAAGTTCGTGTCGAATGGCAGCGTGTCCGTGGTGCTGGAGACGACGGAGAAGAGCCCCCCCTTCGTCATCCACTACGTCACCAGCACCCAGCTCATCGCCTTCCACGACCATGACATCACCTATGGCGTGGGCGCCAGGACGAGCTGGAGCACGCTGACCCGCGACCTCCTGACTGACCTGCGCAAAGGCGTGGGCCTGTCCAACACCAAGGCGGTCAAGCCCACCAAGATCCTGCCACGCCGTGTGGTCAAGCTGGTGATGCACGGCCGCGGCTTCCTGGACAACGTGACCGTGTCCACCACCGCCCACATGGCCGCCTTCTTCGCTGCCAGCGAGTGGCTGCTGCGCAACCAGGACGAGAGGGGCGGCTGGCCCATCATGGTGACGCGCAAGCTGGGCGAGGGCTTCCGTGCGCTGGAGCCGGGCTGGTACTCCGCTATGGCGCAGGGGCAAGCCATGTCCACGCTGGTGCGCGCctacctgctgaccaaggaccCGTCCTACCTCAGCGCTGCCCTGCGCGCCACCACCCCTTATAAGCTGCCCTCTGAGCAGCACGGCGTCAAGGCGGTGTTCATGAACAAGTACGACTGGTACGAGGAGTACCCCACCTCACCCAGCTCCTTCGTGCTCAACGGCTTCATCTACTCCTTGATCGGCCTGTACGACCTGGCCGAGACGGCGGGCGATAAGCTGGGCCGGGAGGCAGGGCTGCTGTTCAGCCGGGGCATGGAGTCGCTCAAGGCGCTGCTGCCACTGTACGACACTGGCTCCGGCACCATCTACGACCTGCGCCACTTCATGCTGGGCACAGCGCCCAACCTAGCGCGCTGGGACTACCACACCACCCACATCAACCAGCTGCAGCTGCTGGCCTCCATCGACAGTGCACCCATCTTCAGGGACTTTGTCAAGCGCTGGAAGAGCTACCTGAAGGGTGGCAGGGCCAAGCACAACTAGAGCTGTCCACCAAACAGGGCCCGGAGCCAGCCTGCTGCAGGCCCTCTCACGCTGGACAGTGTGCCCGGATCGGTCCTGGTCTGTCCAGTGGAAACtaaggatgtgtgtgtgcgtgtgtgtgtgcgctggtAGGTAGTATACAGGTGAGGGTGCTTGGGTGAGCTGGTGGTggttgtttgtatgtgtgaggTGTGGGAGTGTGTGGAAAAGGGGTTTTTATGGTTGGTCTTATTTGACTCCAAATATTGAAATCATTAACTTtgtagaaaatatttaaaaaaaaaaaaaaagaatactcCTCTTTGACTGTTTCCAGGGATTGGACACACAGCTGTGTTTTGCACCGAAGTGGGTAGAGACGGGTCTCGTCTGGCCTGACGGCGTTTCCTTCAGTGCTCCACATCTCTGTgtcttttgtcttgttttaagtGCTGCGAAGGTGGGGCTGGGGGGAGGATACACTGTAGACATCACTCACTTTTCAGAAACAAACCATGGGGGAAGATGATGTGCAGGATGATTGCAGatggattattatttaatttttttcccattaaCTCCACCCAAAGAAATTAGGAGTTGACAAGTAAATTCTGTGGGCGCGGATGTCTTGTATGAAGCGGCGACATTAATCTCATGACAGTCCGGTGTTGGGCTTTGTCGGGTCATTTTCTGGCCACACTCGGTATGTATTTGCTTTGGGAGTAAGTAGGGGTCAGTGTCCAGCCTCGGTGACCTCTGCTTCCTTTCGCCCTGCTTCTGTAACTGCACAGTGAACACAACCCTTCCTTTGAGCTTTTCCCTAACTGGCTGTCCTGCACAGAGAACTCTGAATTATTTGACAATCTGGGCTGAACTCTGGCCCGCCACGGTCCAGTATGAATCGGCACCACTGAGTTTccatcttttctctctccctctccctctctgtagcAGCTGTGATCTGCAGGGTCAGTCAGGATGGGTTGTGTGTGGCAGGGTTAAAGCCAAGCATGAACATTTTTACTCTGttactttgtattttacatttttcactccACAGATGTGTTGCTGTGAAGTCACAGATTTGAcattaatcccccccccccccttgcaGAGCACATGTGTGTGACCCACCTCCACCCATAGATACCTGTGCACAGCTCCTTGCTCTCCCCTGGCTGGGGTGCCACTTTCCTATGactatatataaatcaaaacgggtctttaaaactgtgtttttttgttttttttttatcatccaGTTATGCTTtagaattattaaaaacagaaaagggaaaacattataaataaaatattctttcAAGAAATGACAGCGTTAGTGTAGGTTTCCAAATCCACTTCCTGTGCTCATGGCAATTCCCGTGTTTCGGTCGTTTGAATGTCTTGCAGTCGAGGATGAGGTGTTAGGGAATCTGTTTGCTGTCATTAGGCTGGCTGGTCTGAGGGGTGTGTCGGGCTTCGGTGCTGCACACTAACGGGTGTGTTAGAGGAGGAGTCCTGTGTGTGGAGTGATGCGCAAGTCTCTGTGCCAGTACTGCTGAGGGgggtgggaggaggaggggagggagggagagaaccTAGTCAGGGCTGGGGAACACCCTGATTTACTGCCCGGCAAAAGGAGGCACACATTACAGGAGgataaaagaacaacaatttGCATTCCcaaagtgaaatatttatttataccttATGTATGCACAGAGCCAGGCACTGGCCTCCACACACGGGCAAGTCTACAGAGTCCATGTGAAGTCGTCCCGGAGTTCACACGCCCGACAGCCCTGAAAGCTGACAAGCACAGGCATTACGTTGACATTGTGACATGACACTTGTCTTCtatagatgtatttaaatgcGGAAGAAAAGCCCCTATTGTGAGAATCGTTCAGCAGGGTTGTGAGGGAGGCGGCCCGGGCGTTGGCCCTGCTGGTGCCGGGTGTGGCTGGTGGGAGACGACTGTAGGAATGTGGTGTCGATTCTCTGCTTGTTGTGCTGTGAACACAGCTTTGCGCACTACACTACAGGTTGTATGTATTACTGTATTCGACTTAGGCAGCAGTAGGATACTGTGGTTTAGAATCGGTTCTTTATGACGGCATGTAAagttttcctgttgtttgtaCCACAGTCTCTGAAACCGGGGTTTCTTTCCATCAGAGATGGAGACATCAAGACGTCTCTGTGTGTGCGGTGAGGATGTCAGTTCAGTCCTGTTGTGATGGACATTTTACATAAATcgaaaaatattaaaagtgtgCCCCTCCAACCctccagtttaaaaaacaaaccgaaaaacaaatgatcacttcaacaacaataaaaactgcCTTTCTGTCCTAGTGTAGATGGCTTTAATGGGGATTTAGTGAAGGAGAAATGTTATGTAATTTGCGGCAATCTTCTCACCGGGGATGTGTGCAACTGTACAATGAATTGAGTGTTTTGCTGGCGCTGTCAAAGGGAGCAGGCTTGACAGCGACGTGTTATTTTCGGGGACTGTGTTTACttaatgttttgcattgttttaaagatgaaaagCGTTGGCGGAGATCATGCTGTCTGCGGCTGAGAACAGGCCGACGGCAAAAAAAGCACAATGGGACACTTCCtgattagttttcttttttcttttagttttagtttttctggaCAATGTGCAAGACCATTCCCTGAAAGCTGCTACTCGTGTTTCACAGTGTAATTGATAAATGTACAAtccttcttttttcttctgtttctcctTCAGTATCCTGTACATTTGACATGTGGAGATAGTCACATGTGACATATGCAATAAACTGTTTACTGTAACCTGTTGCTAGGGGATGTCCTGGGAAGTTTTACAGACTTTGCAATTCAAGCACAATGTGCACACGCTACCATTTTTTTATGCagagtgtttatatataaaagaatcGATCTTTGTGCTTCaaaatttgctttttaaagttgtaaaataaaaggcatttttCTTA

Function

NR:

description
PREDICTED: D-glucuronyl C5-epimerase-like

GO:

id name namespace
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives molecular_function

KEGG:

id description
K01793 GLCE; heparosan-N-sulfate-glucuronate 5-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007409 True 4890 mRNA 0.52 3 17980242 17991860

Neighbor

gene id symbol gene type direction distance location
AMCG00007411 NA coding downstream 1720 17962721 ~ 17978522 (-)
AMCG00007406 kif23,LOC107686310 coding downstream 22180 17943771 ~ 17958062 (-)
AMCG00007405 NA coding downstream 131518 17823894 ~ 17848724 (-)
AMCG00007401 NA coding downstream 331470 17592301 ~ 17648772 (-)
AMCG00007399 NA coding downstream 449643 17521789 ~ 17530599 (-)
AMCG00007412 LOC107100407 coding upstream 46975 18038835 ~ 18048218 (-)
AMCG00007410 coro2b,LOC105906559,LOC106562700 coding upstream 73566 18065426 ~ 18077532 (-)
AMCG00007413 NA coding upstream 121915 18113775 ~ 18115759 (-)
AMCG00007419 pias1,LOC103372741,LOC103141277,LOC103466533,LOC106521199,LOC108229849 coding upstream 232471 18224331 ~ 18237308 (-)
AMCG00007420 NA coding upstream 273554 18265414 ~ 18275251 (-)
G23629 NA non-coding downstream 73834 17906101 ~ 17906408 (-)
G23624 NA non-coding downstream 156924 17821767 ~ 17823318 (-)
G23620 NA non-coding downstream 205396 17774551 ~ 17774846 (-)
G23580 NA non-coding downstream 321684 17658352 ~ 17658558 (-)
G23566 NA non-coding downstream 396802 17581606 ~ 17583440 (-)
G23676 NA non-coding upstream 80195 18072055 ~ 18074005 (-)
G23745 NA non-coding upstream 322291 18314151 ~ 18403277 (-)
G23799 NA non-coding upstream 627425 18619285 ~ 18620731 (-)
G23813 NA non-coding upstream 720217 18712077 ~ 18714368 (-)
G23839 NA non-coding upstream 785985 18777845 ~ 18778069 (-)
AMCG00007375 NA other downstream 1358337 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 1634662 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 1666210 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 3947030 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 4034177 13945643 ~ 13946065 (-)
G23661 NA other upstream 63610 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 210599 18202459 ~ 18208020 (-)
G23838 NA other upstream 784500 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 1799841 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 1923286 19915146 ~ 19923153 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033857 glceb coding NC_007118.7 CM002891.2 33372680 ~ 33444000 (+)
grasscarp (Ctenopharyngodon idella) CI01000184_00340384_00342554 GLCE, GLCEA coding CI01000184 null 340384 ~ 342827 (+)