AMCG00007410 (coro2b,LOC105906559,LOC106562700)


Basic Information

Item Value
gene id AMCG00007410
gene name coro2b,LOC105906559,LOC106562700
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18065426 ~ 18077532 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007410
ATGTCATGGCGTCCACAGTACCGAAGCTCCAAGTTTCGAAACGTGTATGGCAAGGTGGCCAACCGAGAGCACTGCTTTGACGGCATCCCCATCACCAAGAACGTCCACGACAACCACTTTTGCGCCGTCAACGCCAAGTTCTTGGCCATTGTGACCGAGAGTGCTGGCGGGGGGGCGTTCCTCATCATCCCCCTGGAGCAGacaggCCGCATTGACCCACACTACCCCAAGgtgcgGATCTGGGAGATCCCTGATGGGGGGCTGAAGAGGCACATGACGGAAGCGGTGCTGGAGCTGTACGGACACAGCCGGCGCGTCGGCTTGATCGAGTGGCACCCCACCAGCAGTGGCATCCTCTTCAGCGCTGGCTACGACTACAAAaTCCTAATCTGGAACATGGACATCGCTGAGCCAGTGAAGATGATCGACTGTCACTCAGATGTGATCCTGTGCATGTCCTTCAACACGGACGGCAGCCTGCTGGCCACCAGCTGCAAGGACAAGAGGCTGCGCGTGATCGAGCCGCGCTCTGGCCGGGTGCTGCAGGAGGCAAACTGCAAGAACCACAAGGTGAACCGTGTAGTATTCCTGGGCAACATAAAGAGGCTGCTGACCACGGGGGTGTCGCGCTGGAACACACGACAGATCGCACTGTGGGACCAGgagGACCTGTCGATGCCAATCATTGAGGAGGAGATCGACGGGCTGTCAGGGCTGCTCTTCCCCTTCTACGacgctgacacacacatgctctATCTGGCTGGGAAGGGAGACGGCAACATCCGCTACTATGAGGTCAGCACAAAGACGCCCTACCTGCAGTACCTCATGGAGTTCAGGTCCCCCGCCCCACAGAAAGGCCTGGGCGTGATGCCGAAGCACGGACTAGACGTGGCCTCCTGTGAGGTGTTCCGCTTCTACAAGCTGGTGACGCTGAAGGGGCTGATTGAGCCCATCTCCATGATCGTGCCCAGGAGGTCAGAGACATACCAGGAGGACATCTACCCCATGACCCCGGGGATGGAGCCCGCCCTCACTGCTGAGGAGTGGCTGAGCGGCATCAATCGCGACCCTGTGCTGATATCCCTGAAGGAGGGGTACAGGCGCCCCTCACGGCTGGTGTTCAAGGCACCGGTGAAGGAGAAGAAGAGCGTTGTGGTGAATGGCATCGACTTGCTGGAGAATGTGCCGCCCAGGACAGAGAATGAgCTCCTGCGGATGTTTTTCCGGCAGCAGGACGAGCTGCGGCGGCTGAAGGAGGAGCTGGCGCAGAAGGACGTGCGCATCCGacagctggagctggagctcaACAACCTGCGCAACAGCCCCCCGGCATGTGACCCCCCCCAGCGACACGAACTCTGAAAGACACTCCGCCTCCCACTGCAGCTcccatcccccccaccaccactaccaccaccactaccaccaccactccCTGCCTCCCCTGCCCTGCCCCCACCCCACATACTGCCATAGGACTTGCGCAGGACAGATTGGGCATTCGCTGTTCCATGCTCTGCAACTCCTCCTCCCACTCCTCTCACCAGTGACCTCGGCTCCGACCACTTGCAGCTGCCATTTCTCAGCAAGCATCCACTGGAATGGCgcaatatgaaatacaaactgATCGCTGGTTGATTGATTAGGTCAAAGGAAGAAAAGGGACAGCCATTCCCAGGAAGCTGCCCACATccagtgtcagtcagtgagcTGTGAGTGActctggctctggctcctgGGCTCCCCTGAAGGACCTCGACCTGCAGGCTGCTTCATGCATCTGTGGTCcgtgaaaatgttttaatttccatttttcttATGCTTATTActcttatttattcttttgtttgtttgtctttttatatagGGGTTCATTAAACCGGCTCCATTTAGACAAGGCTAACCCCATACCCCAacacccacccctccccccacacccAAGCCCTTACTAGCGGGACCCAAATACCAATGAGGAGATTCTGCCCAGTGAGGAAACTCATCCCCATGCATTTCCTTAGATTTGGTACAGGATCAGCATAGGCCTTAACTGAGTGCAGGCATCCTGGGGCCACAGAGCTGTGTTGGAGCCACGCTGGGGAACTTCAGGGTTTCTGCCCCACAGTAGGAGTGGGGCAACATCACAGTAATCTTTAGGAAACACGGAGAAGATAACGCAGTGCAAGGTCTTGGTTAGTCAGACAATTTCCTCTTGTTTTGCTGCAGACCTGTTGAGAGTAAGGGGCACTCTAAACCTGAGCTCAGATACAGCAGGGTACTGTGAACCAGTTCTGGAGTACAGGCCAGCCCAGGGCAACTGACTGGTCTGGGATGACCAGTGCACACTTTCACAGTCTGGTTTCAACTCCAGAAATTTTACCTGGAGGGGTCCCAAGCCCTAGGTACCAGACATTAAGCTCCAACAGTGCAAATAAATCACAGGTCACAgttcacagtacagtacagtactttaAACACAGAAGGGGGGTTGCAACACCCAGGTACAATGAAGAGCACGagtagggggggggggcacagacCAGGAGAATGAGATatggagggaaagaaaaaagaaaaaagcagaagaGCATTAAATTCAGCGCCCCAGACCTGCGGCTATGGTTTAATCTTTAAATCTGAGACCCTGCTAATGACAAGGATGACAAAAAGGGCTGAGAACCACTAGTCAGGTGTGAGGGGAGGCTGGCATGTCAGAAGGTGGCAGGTAGAGACGGGTCTGAGGAAACCACGAGGGAGACGGGGGTGGACTACAGTAGCTGGGGGTTTGTGATTGAGGTTGCAGGGTTGTGCAGGGTGGGTGGCTCTGTGCTCGGCCGCGTTGAGTAGCCAGGTGCCACTGGGTACAGGGAGATCACTGTGGAATAGCAGGGGTGAACTGTCACAGCATTGCCAGCACAGAGCACTGAATACAAGGGCGACAGCAggttaaaactaaaaaacagcaaccaccccttagacacacacacactgaaaggAATTAAAAGATCCCTCTctataaaattaatacataatcaTGTTATAATGTCTGTGGCTTGGAGAGGACAGGCTATGAGACACACAGATGGTGCAATAGGACGGTCtggttgtgtatggggctgtgtTAGCATTAGAGCCTACCACTAGAGGGCGCGGCGCCTTaataaaactggaaacatttgCGCTAACTACACTGACTGAAACTGGAAAAGACAAGGAGGAAGTGGATGCGGTGTGCAGCGCTGGAACTGTGGCTCACAGCATCCCACCTGTCTCATGTAACTTAACAATATTAAAAGGGTTTCttaataaactgtgtaaaagaTATCGTCTGaaaatcaaaagctttttcaaCTGTAACCTCAACCGTCTCTGCTGCTTTGCTAACGTTGCTTCTGTTTTGACTCCATGAAGAAATTGAAACGAACAGTGAGCCCCGCAGCATCACACGCACTAAGATGCGCACTTTGAAAAGTGCACAGACTCAAAGGTGCAGACAGACTGATTCTGGCATGTGATAGTTCGAAGCATTAATGTCATTGGAGAAATTGTtcttggtaaaaaaataaataaagagtcaAGCACTTCGACTTATTGCAAATGGCGAGAAGTGGCGCACTGGCTAAGTCCAGTGCTGAAGTACTAACTACA

Function

symbol description
coro2b Enables talin binding activity and vinculin binding activity. Acts upstream of or within several processes, including negative regulation of cell-substrate adhesion; regulation of actin cytoskeleton organization; and regulation of establishment of protein localization. Located in focal adhesion.

NR:

description
PREDICTED: coronin-2B isoform X1

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0016020 membrane cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K13887 CORO2; coronin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007410 True 3648 mRNA 0.53 11 18065426 18077532

Neighbor

gene id symbol gene type direction distance location
AMCG00007412 LOC107100407 coding downstream 17208 18038835 ~ 18048218 (-)
AMCG00007409 LOC105906560,LOC106562708,LOC106562601 coding downstream 73566 17980242 ~ 17991860 (-)
AMCG00007411 NA coding downstream 86904 17962721 ~ 17978522 (-)
AMCG00007406 kif23,LOC107686310 coding downstream 107364 17943771 ~ 17958062 (-)
AMCG00007405 NA coding downstream 216702 17823894 ~ 17848724 (-)
AMCG00007413 NA coding upstream 36243 18113775 ~ 18115759 (-)
AMCG00007419 pias1,LOC103372741,LOC103141277,LOC103466533,LOC106521199,LOC108229849 coding upstream 146799 18224331 ~ 18237308 (-)
AMCG00007420 NA coding upstream 187882 18265414 ~ 18275251 (-)
AMCG00007422 NA coding upstream 212560 18290092 ~ 18294570 (-)
AMCG00007427 NA coding upstream 223323 18300855 ~ 18304318 (-)
G23663 NA non-coding downstream 2434 17972906 ~ 18062992 (-)
G23629 NA non-coding downstream 159018 17906101 ~ 17906408 (-)
G23624 NA non-coding downstream 242108 17821767 ~ 17823318 (-)
G23620 NA non-coding downstream 290580 17774551 ~ 17774846 (-)
G23580 NA non-coding downstream 406868 17658352 ~ 17658558 (-)
G23745 NA non-coding upstream 236619 18314151 ~ 18403277 (-)
G23799 NA non-coding upstream 541753 18619285 ~ 18620731 (-)
G23813 NA non-coding upstream 634545 18712077 ~ 18714368 (-)
G23839 NA non-coding upstream 700313 18777845 ~ 18778069 (-)
G23840 NA non-coding upstream 701639 18779171 ~ 18779608 (-)
G23661 NA other downstream 6477 18055470 ~ 18058949 (-)
AMCG00007375 NA other downstream 1443521 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 1719846 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 1751394 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 4032214 13981374 ~ 14033212 (-)
AMCG00007418 fem1b other upstream 124927 18202459 ~ 18208020 (-)
G23838 NA other upstream 698828 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 1714169 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 1837614 19915146 ~ 19923153 (-)
AMCG00007494 NA other upstream 2093797 20171329 ~ 20222004 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033855 coro2ba coding NC_007118.7 CM002891.2 33279108 ~ 33341921 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_07070470_07091280 CORO2B, CORO2BA coding CI01000026 null 7070470 ~ 7091509 (+)