AMCG00007412 (LOC107100407)


Basic Information

Item Value
gene id AMCG00007412
gene name LOC107100407
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18038835 ~ 18048218 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007412
ATGTGCCCAGGCAGACAGCAGCTCCACACACTCAGCAAACTGCACCCATATACGGACCCACCTGCACTACTGCCACAGAGCCCCGCCACAGACACAGCCTCAGCAGGAGCGAGGGGCCCTCCCCAACCGGCCGCACCCTCTCAGGTGGTCCTGATGGCTCGGCTATTGAGAACAGAACCCTGTGCCCAGGAATCATCACCCGACGGCCCAGCAGGGTCACCTCCCAGGATAACTAACCCACCTTGTGAGGAGGTTTTGGAGAGCCCGGACTGTCCTGTTGACTGGAGGGGCACCAGTACTGACCTGCCTCCCTTCCCCCCCCGCAGCACGATGAGTGTGGACGAGGACGCGCGCTGGCTGGAGTGGGTGACGCAGCAGTTCGAGAGCATCGCCGGGGAGGACAAGGAGATCGACCTGGACGAGTTCAAGACGGCCCTCAAGGTGAAAGAGTCCTTCTTTGCAGAACGTTTTTTCGCGCTGTTCGATTCAGACGGCAGTGGCTCCATCAGCCTGGACGAGCTTCTGAAGGCCCTGAACCTGCTGATCCACGGCAGTGAGACGGACAAGCTGCACTTCCTGTTCCAAGTGTACGATGTGGATGGCAGCGGCTCCATCGACCCCGACGAGCTGCGCACCGTGCTGAAGTCCTGCCTGCGGGAGAGCGCCATCTCTCTGCCTGAGGAGAAGCTGGACGACCTGACGCTGGTGCTGTTTGAGTCGGCCGATCGGGACGGCAGCGGCTCCATCACCTTCGAGGAGCTGAAGGCCGAGCTGGAGAACTTCCCCGAGGTCATGGAGAATCTAACCATAAGtgcTGCCAACTGGCTGAAGCCCCCTGAACCGGAGCACAAGTCCCACACCCCGCGCTACCTGACCCCGGCCTACTGGCACAACAACAGCCGGAAGCTGCTATTCCTGGGCTGCTACATCTGCCTCAACACCCTGCTGTTCACTTTCGCCGCGCTGAAGAACAAGCCCAGTGGCCCCTGGGTGATGGTGGCCAGGGGCTGCGGACAGTGTCTGAACTTCAACTGCACCTTCGTTATGGTGCTGATGCTGCGGCGCTGCCTAACCTGGCTCAGGGCCACCTGGGTGGTGAGGATCCTCCCACTGGATCAAAACGTGCTGCTGCACCAGCTGGTGGGCTACACAATCTTTGGGTTCACCCTGGGGCACACGGTCGCTCACATCATAAACTTTGGTAAGAAAAACCATCATGAGACTGGTGCAGCACACGAGACTGGTGCAGCACACGAGACTAGTGCAACACACGAGACTGGTGCAGCACACAAGACTGGTGCAACACGCGAGACTGTGGTGCTGTCTCAGCGCGGGGACTATAGGCTGTGGGAGTACGTGCTGACCACACGGCCAGGGATCGGCTGGGTCTGTGGTACGGCCTCTCTGACTGGCGTCTTGCTGCAGCTGCTCGTTAGCCTGATGACCGTGTGCTCCAGCACCTTCGTCCGACGCAGCGGCCACTTTGAGGTGTTCTACTGGACTCACCTGTCCTACATCGGGGTGTGGGGTCTGCTGGTTGTGCACTGTGCCAACTTCTGGAAGTGGTTTGTGGTGCCTGGGCTGGTGTTCCTACTGGAGAAACTGGTGGGCATCGCAGTGGCTCGCATGGGCGGGCTGTACATCGTGGAGGTCAACCTGCTGCCCTCCAAGGTGACCCACCTGGTGATTAAGAGGCCGCAGTTCTTCCACTTCAAACCAGGTGACTATGTGTTCATCAATATCCCCGTCATCGCCAAGTACGAGTGGCATCCCTTCACCATCAGCAGCCCTCCGGAGCAGCAAGATACGCTGTGGCTGCACATCCGGTCGATGGGCCAGTGGACCAACAGGCTGTACGAGTACTTCAGGCAGGCTGGGCCCCAGAGCGTCTCCGGCCACAGCCTGGCCAAGAGCCTGACCCGCCGGCGGCGCCAAAGGATCAGACAGGGGGAGCTGTTCCACTCTGCCGGCTGCAACGGGACAGTCGCCTCGAACAAGGATGCCGCCATCGAGCTGACCTCCTACCGGCCCAGTTCCCCCCCCAGCCCACCCGCCGAGCTGGGGGGACAGGCTGAGCGTGGGGACAGCCCACTGCCCTGTGAGATCACAGGAAAACTGAGTGAAAATCAAAGGTTTTGTAACATTAAGTTTCTCTCTGGTGCCGCCTATattgtcagtgctgtgtgtgagtgttgtttcagtggcagtgctTGCTATGTAGATGGACCGTATGGAACGCCAACGAGGCAAATCTTCGCCTCAGAGCACGCAGTCCTGATTGGTGCCGGCATTGGCATCACGCCCTTCGCCTCCATCCTACAGAGCATCATGTACCGGTATCGGATGAGGAAGCAGAACTGCCCTAACTGCAGCTACTCCTGGTGTGAGAACATCAAGGACAACGAGATGAAGCTCAGAAAGCAGCAGACAGCAGTGTGTACCGGGCTGCACAGGCTGGCACTGACCCCTCCTCTGTGTGGCCGCGTGTCTCTCACTGCAGGTGGATTTCATCTGGATCAACAGGGACCAGAAGTCCTTCGAGTGATGGCGCTGGACCTGCTGGccaagaaggagaagaaggactCCATCACTGGGCTGAGGACACGCACGCAACCTGGCCGGCCCGACTGGGCCAAGGTGTTCCAGAAAGTGGCcgaggagaggaaggggaaggTGCATGTGTTCTTCTGTGGCTCCCCGGCGCTGGCCAAGTTAATCAAGGGCCACTGTGAGCAGTCCGGCTTCAAATTCTACAAAGAAAATTACTGA

Function

NR:

description
PREDICTED: NADPH oxidase 5-like, partial

GO: NA

KEGG:

id description
K21424 NOX5; NADPH oxidase 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007412 True 2769 mRNA 0.59 19 18038835 18048218

Neighbor

gene id symbol gene type direction distance location
AMCG00007409 LOC105906560,LOC106562708,LOC106562601 coding downstream 46975 17980242 ~ 17991860 (-)
AMCG00007411 NA coding downstream 60313 17962721 ~ 17978522 (-)
AMCG00007406 kif23,LOC107686310 coding downstream 80773 17943771 ~ 17958062 (-)
AMCG00007405 NA coding downstream 190111 17823894 ~ 17848724 (-)
AMCG00007401 NA coding downstream 390063 17592301 ~ 17648772 (-)
AMCG00007410 coro2b,LOC105906559,LOC106562700 coding upstream 17208 18065426 ~ 18077532 (-)
AMCG00007413 NA coding upstream 65557 18113775 ~ 18115759 (-)
AMCG00007419 pias1,LOC103372741,LOC103141277,LOC103466533,LOC106521199,LOC108229849 coding upstream 176113 18224331 ~ 18237308 (-)
AMCG00007420 NA coding upstream 217196 18265414 ~ 18275251 (-)
AMCG00007422 NA coding upstream 241874 18290092 ~ 18294570 (-)
G23629 NA non-coding downstream 132427 17906101 ~ 17906408 (-)
G23624 NA non-coding downstream 215517 17821767 ~ 17823318 (-)
G23620 NA non-coding downstream 263989 17774551 ~ 17774846 (-)
G23580 NA non-coding downstream 380277 17658352 ~ 17658558 (-)
G23566 NA non-coding downstream 455395 17581606 ~ 17583440 (-)
G23676 NA non-coding upstream 23837 18072055 ~ 18074005 (-)
G23745 NA non-coding upstream 265933 18314151 ~ 18403277 (-)
G23799 NA non-coding upstream 571067 18619285 ~ 18620731 (-)
G23813 NA non-coding upstream 663859 18712077 ~ 18714368 (-)
G23839 NA non-coding upstream 729627 18777845 ~ 18778069 (-)
AMCG00007375 NA other downstream 1416930 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 1693255 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 1724803 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 4005623 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 4092770 13945643 ~ 13946065 (-)
G23661 NA other upstream 7252 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 154241 18202459 ~ 18208020 (-)
G23838 NA other upstream 728142 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 1743483 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 1866928 19915146 ~ 19923153 (-)

Expression


Co-expression Network