AMCG00007415 (LOC104955851)


Basic Information

Item Value
gene id AMCG00007415
gene name LOC104955851
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18209628 ~ 18216895 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007415
ATGGCTTtagataaatacatGACGGAGAAGGCGCGGATTTGCAAACCGCAAAGCGTCCTGCAGCGACTTGAGTTGGGAGCCCAGCCTTTGACAGCGGCGGgtcgggaggaggaggaggaggaggaagaggaagagcaggaggcAGGAAGTGAAGTGAGAGGGAGGCTGGAGCGGCTCTTCATCGAGAGTCTGCGCAGGGAGGGAGATGCAGCCAAGCACACGGAAGCGGCACAACTCTGCCATCCCAACAGGCATGCGTCCCGGGAGTCTGACTCTGTGCTCAAGAGGCCACAGTTCCACCTGGACCTGTGGTTCTACTTCACTGTGCAGAATTGGGTCCTGGACTTCGGCCGGCCCATCGTCATGATCATCTTGCCTCTGGAGTGGTTTCCTCTGAACAGGCCCAGTGCTGGAGACTACTTCCACATGGCCTACAACATCATCACCCCCTTCCTGCTCCTCAAGCTGATAGAGCGCAGCCCAAAGACACTGCCGCGCTCGGCCGTGTACGTCTGCATCATCACCTTCGTCATGGGTGCCAGCATCCACCTGGTGGGCGACTCCGTCAACCACCGGCTCATCCTGAGTGGCTACCAGCTGCACCTGTCCATCGACTCGTTTGAGCTGCTGTACTACTACGATGAGAACCTGGGCCACTCGATGTGGTACGTGCCCTTCTTCCTTATCCTGTTCCTCTACTTCACCGGCTGCTTCACCCACAtcaaggaggagaagaagatgCCGGCGTCTGCCTGGCTGCTGGTGGTGCCCAGCGGTCTGTACTACTGGTACCTGGTGACGGAAGGCCAGATCTTCATCCTGTACATCTTCACCTTCTTCGCCATGACGGCCACGGTGATGCACCAGAAACGCAAGGGCTTCGTGCTGGACAGCAACGGCCTCTTCCTGTTCTACAGCTTCTCCCTGGCGCTGGCGCTGGTGGCCATGTGGGTGGCCTGCCTGTGGAGCGACAAGATCCTGAGGAAGAAATACCCCGGGGTCATCTACGTCCCCGAGCCCTGGGCCTTCTACACACTGCACCTCCAGGACCAGCGCTAGCCAGAGCTGCACTGCTGCCCCGGGTCTGTGAGAGGacggcagacagacagacagatagacagacagatagacagacagcaGACAGACGGGGAGCTGTCCTCCGAAGCAAGCTGACTCCCTCTATGCAAAAACAaccaagcacacaaacaaaaacaaacaaaatgcaggtATTTCAGGGGTAAAGGACTCGCACCGGAAATGGAATTGTCTTTtcttactgtttattttttactgtttatttcCCGCCCCCCATCATTAGTTTTTGTGTTAACTAACCTTCCTGTGCTAAGTTGGTACAACCCAGACTGATCCCATTCACCAGGGGGCTTTGCACTGTATTAGCGCCCCCTGCTGCTGATGTTGTTTTACAGCTGTCACAGCATTATTATAGCCTTCTTACTGCACTACTTTTCTTGAATTGTGTACATTCTGTGACAGCTGTATGTCACCTTGGGTAAGAGCATCTactaataaattaacaaataaatgaataataataacaataataatgtgaagGTGTTAAATTTGATAATAAATCCTTCTCTGGACACACGAGACTTGGATAATTCTCCGCAAAATAACTTGGATCTAAACACCACCCTGTTTTTTCATCGTGCACAACCTGCCGACGGGAAGAGTGATCGTCTACCCTGCCGCTGTTGGTGCTGTAGCTCTGTATTCCCACACAACCCGTTCAGAGCGACCCTGGCGAGAGCAGGGCAGGTGGCGGCAGTGTAGGCCGAGCACTCGGTGGGGGAGTGGCTCTGCCTGTGCCTGCTGAGCTGACATGGGCCCTGAGCGAGTCATCCGTCCATGGCACAAACAGGAGcctttttgtaaatgtatatcttCCTTCAGTTTTGGGTGTATGTTCTCCcttgttt

Function

NR:

description
PREDICTED: ceroid-lipofuscinosis neuronal protein 6 homolog isoform X2

GO: NA

KEGG:

id description
K12359 CLN6; ceroid-lipofuscinosis neuronal protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007415 True 1943 mRNA 0.53 8 18209628 18216895

Neighbor

gene id symbol gene type direction distance location
AMCG00007416 NA coding upstream 11102 18168450 ~ 18198526 (+)
AMCG00007408 NA coding upstream 146135 18062234 ~ 18063493 (+)
AMCG00007407 anp32a,LOC107700478,LOC107740437,LOC107557695 coding upstream 150672 18054095 ~ 18058956 (+)
AMCG00007404 NA coding upstream 480349 17701160 ~ 17729279 (+)
AMCG00007403 morf4l1,LOC107596963,LOC107686360,LOC107738770 coding upstream 534074 17659682 ~ 17675554 (+)
AMCG00007428 NA coding downstream 180452 18397347 ~ 18402499 (+)
AMCG00007437 lctl,LOC105892386,LOC102794608 coding downstream 358947 18575842 ~ 18584276 (+)
AMCG00007438 rl4a,rpl4,LOC106561854 coding downstream 373785 18590680 ~ 18596353 (+)
AMCG00007436 tipin coding downstream 402413 18619308 ~ 18621844 (+)
AMCG00007440 NA coding downstream 404977 18621872 ~ 18623043 (+)
G23696 NA non-coding upstream 5267 18202462 ~ 18204361 (+)
G23642 anp32a,LOC107755092,LOC107700478,LOC107557695,LOC107740437 non-coding upstream 146724 18050143 ~ 18062904 (+)
G23634 NA non-coding upstream 256353 17952551 ~ 17953275 (+)
G23631 NA non-coding upstream 266518 17942776 ~ 17943110 (+)
G23628 NA non-coding upstream 304679 17904558 ~ 17904949 (+)
G23780 NA non-coding downstream 369279 18586174 ~ 18586536 (+)
G23781 NA non-coding downstream 371121 18588016 ~ 18588690 (+)
G23782 NA non-coding downstream 371971 18588866 ~ 18589068 (+)
G23791 NA non-coding downstream 407026 18623921 ~ 18625059 (+)
G23804 NA non-coding downstream 497776 18714671 ~ 18719794 (+)
G23698 fem1b other upstream 1320 18207078 ~ 18208308 (+)
AMCG00007417 NA other upstream 7668 18198618 ~ 18201960 (+)
AMCG00007379 NA other upstream 1546928 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 2829663 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 2921668 15276711 ~ 15287960 (+)
AMCG00007414 NA other downstream 835 18217730 ~ 18224936 (+)
G23724 NA other downstream 73213 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 350347 18567242 ~ 18570472 (+)
AMCG00007452 NA other downstream 790655 19007550 ~ 19014899 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other downstream 834082 19050977 ~ 19056133 (+)

Expression


Co-expression Network