AMCG00007416


Basic Information

Item Value
gene id AMCG00007416
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18168450 ~ 18198526 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007416
ATGGGAGATGCCAAGCTGTGTCTGAAGGGCTGGCTCCCACGTGGCGGTGCTCTACCTCTCATGTACAAGGAGCACAGTGTCCAGAACTGGCCAGGATCAGCCGTCTTCCGCTCTGGGTCTCCAGCACAGATGGCCAGGGCTTTATCAGAGACTTCACATTTCTGCTGGGCTCACCTGTTTGAcaccctgctgtgtgtgtttccaggGGGTAGCGACTCCTTCAACATCGACACCAAGCACCCGCGCATCATCGAGGGCTCTCGGGAGGCGCAGTTCGGCTACACAGTGCAGCAGCATGAGGCGGCGGGGCAGAAATGGTTACTGGTCGGCGCTCCCTTTGAGACCAATGGCCAGCACCAGACTGGGGACATCTACAAGTGCCCactaaacaaaaaaggaaatggcaACTGTTCCAAACTCAACCTAGGAAGGATCTCCCTCACCAATGTGTCAGAGCGCAAGGACAGGATGCGGCTGGGAATGACCCTGACCACCAACCCCAAGGACAACAGCTTCGTGGCCTGCGGTCCCCTGTGGTCCTACGAGTGTGGGAGCTCCCTGTACAGCACGGGCATCTGCTCCCGGGTCAACTCCACCTTCAAATTCTCCCGCACCATCGCCCCTGCCTTCCAGAGGTGTGAGACTTACATGGACATTGTCATTGTTCTGGATGGGTCCAACTCCATCTACCCCTGGTATGAGGTGCAGGACTTCCTCATCAACATCCTACAGAAGTTCTACATCGGGCCCGGTCAGATCCAGGTGGGAGTGGTACAGTATGGGGAGGACGTGGTCCACGAGTTTAATCTGAATGAATACAAAACTGTGGAGGAGGTGGTGAAGGCAGCCAAGAATATCGAGCAGCGTGGGGGGGCGGAGACACGCACCGCCCTGGGCATTGAGTTTGCACGCTCTGAGGCCTTTAAGAAGGGGGGACGGCGCGGGTCCAAGAAGGTGATGATTGTGATCACGGATGGGGACGACCCCGATGACAAGCACTTCTTCAACGTGACAGACGAGGCGGCGCTGAAGGACATCGTGGATGCACTGGGAGAGCGCATCTTCAGCCTGGAAGGCACCAGTAAGAACGGGACCGCGTTTGGGTTGCAGATGTCCCAGGCAGGCTTCTCTGCCCATGTGGTCGAGgaCGGGATCCTTGTGGGCGCAGTGGGGGCATACGACTGGAACGGTGCGGTGTTGAAGGAGACGCGGCAGGGCAAGGTTGTCCCGCTCAAGTCCTCCTATCAGCAGGAGTTCCCTGAGGAGCTGAAGAACCACGGGGCCTACCTGGGGTACACGGTTACATCGTTGGTGTCTGCGCTGAGCGGACTGCTGTACGTGGCGGGAGCACCGCGCTTCAACCACACGGGCAAGATCGGCTCATACTATGGCAGCGAGATCGCCGCGGTGGATGTCAACGGAGATGGCATCACCGACAACCTCCTGGTGGCAGCGCCCATGTTCTTCAGCAGCGGCTGGGAGAGGGGCATGGTCTACATCTACACAGTGACCCAGCAGaGCCAGTTCATCCTGGAGGGGGCGCTGGAGATTTCGGACCGGGTGCAGAATGCACGCTTCGGCTCCTCGATGGCGCCCATCCAGGACCTGAACGCCGACTCCTACAATGAGGTGGTGGTGGGTGCGCCACTGGAGGACGACCACCGGGGGGCCATCTACATCTTCTTCGGCCGGGGGGACAGGATAGTGCGCACGCACAAGCAGGATGGGCTGGTGGACCTGGCGGTGGGCTCACTGGGCTCTGCCGTGCTGCTCTGGTCACGCAGCGTTGTCCAGATTCATGTCAATGTCAGGTTCGAGCCGAACAAGGTCAACATCTTCAACAAGGACTGCCGGAGGGGCGGCCGGGAGGTCACCTGCATGTCAGCCATCGTCTGCCTCAACGTCACGGGCAAGACTCCGCTTACGCCTACACAGGAACTTGGTGAGCCATCACCGAAAACCCACTCCACCGGGCCCCACAACCTCACCCTGTTCCCGGGGGTGCCAGGTTGCCAGCATGTCTACTTCCATGTGCTGGTGAGTGTAAAAGTTGGGCAAAATTGGAGACTGGCCATGGGTATTGCTCTGGCTATGGCAGCcttagggtgtgtgtgtgccagtgctGTGCCAACACTGAGCCAACCGCTCCTCTTTCCCCCCAAGGAGTCCACAGACTACGTGCGTCCTATCGTCTTCACGGTGGAGTACGCCATGCAGGACCCGGACGAGGGGCCTGTGCTGGATGACACTTGGCCCACTGTCGTCAGGACAGAGCTACCTTTTTGGAACGGCTGTGACGAGGATGACCACTGTGTCCCTgacctggtcctgcagagccgCACTGACCTCCTGGACACCAGGCAGTACTGCAGTCTGGGTGTGAGGGTGGGCTGGCCCCTGTGCCGGCGGCAGGGCATGGCACTGGGCTCGGAGCGTGTGGTGGAAGATTCACGGAGGAGGCTGGTGGTGGATGTGCGCCTGGAGAACCGTGGGGAGAATGCCTACGGAGCGCTGCTCAACATCTCCTACAGCCCCAACCTGTACATCTCCAGCCTCTTTGTCAAGGACAACTCAGACATCAGACTGGAGTGCAGCAGCGAGGACAAGCTCAGACACGAGAAGCTGTGCAACGTCAGCTCTCCCTTCCTCCGTGCACAGGCCCAGGTGCGAGAGGAGAAGGCCAGCGCTGACAACACCAACATCATTTTCCACCAGTTGAAATACGAGACAAAACTCCTCTTCACCAGGGACTCCAGCTTGTCCCGCTATGAGATCAAAGCCGACCCCtccacagagaaacacagcggCGTTGGGCCTCCATTCAACTTCACCTTCCAGATACAGAACATGGGATTTTTCCCTGTGAGAGATTTATACCTGAAGATTGAAATCCCAGAGGCCACGATGAGTGGAAACCAGCTGCTGCAGATTGCGGATCTCTCCATCGACCAGACAGATGGGTCCCTCTGCAACACCCCCAGTCACATGACTCGAAGTCGAACATATGCTGAGGATCTGTCCCAGTACCCACAGCTGAATCACTCCAACAGTGTGCCGGCGCTGGTCAGGTGCAGCCTCAACCTGCCCCCTGGCCGGGAGGTCAGCGCTCACATCCGCGGCAGCCTGCGCATCGACACGCTCCGTGCTGTGAGTCATTCACCTCGGGAGCGCTATCTGCTGGCCAGGCTGGGGCTGCACCccaaacaccaccaccaccctaCACCCTGCACCCTGCTCTGA

Function

GO: NA

KEGG:

id description
K06587 ITGA11; integrin alpha 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007416 True 3240 mRNA 0.59 25 18168450 18198526

Neighbor

gene id symbol gene type direction distance location
AMCG00007408 NA coding upstream 104957 18062234 ~ 18063493 (+)
AMCG00007407 anp32a,LOC107700478,LOC107740437,LOC107557695 coding upstream 109494 18054095 ~ 18058956 (+)
AMCG00007404 NA coding upstream 439171 17701160 ~ 17729279 (+)
AMCG00007403 morf4l1,LOC107596963,LOC107686360,LOC107738770 coding upstream 492896 17659682 ~ 17675554 (+)
AMCG00007402 LOC105013640 coding upstream 515638 17651631 ~ 17652812 (+)
AMCG00007415 LOC104955851 coding downstream 11102 18209628 ~ 18216895 (+)
AMCG00007428 NA coding downstream 198821 18397347 ~ 18402499 (+)
AMCG00007437 lctl,LOC105892386,LOC102794608 coding downstream 377316 18575842 ~ 18584276 (+)
AMCG00007438 rl4a,rpl4,LOC106561854 coding downstream 392154 18590680 ~ 18596353 (+)
AMCG00007436 tipin coding downstream 420782 18619308 ~ 18621844 (+)
G23642 anp32a,LOC107755092,LOC107700478,LOC107557695,LOC107740437 non-coding upstream 105546 18050143 ~ 18062904 (+)
G23634 NA non-coding upstream 215175 17952551 ~ 17953275 (+)
G23631 NA non-coding upstream 225340 17942776 ~ 17943110 (+)
G23628 NA non-coding upstream 263501 17904558 ~ 17904949 (+)
G23604 NA non-coding upstream 345113 17821766 ~ 17823337 (+)
G23696 NA non-coding downstream 3936 18202462 ~ 18204361 (+)
G23780 NA non-coding downstream 387648 18586174 ~ 18586536 (+)
G23781 NA non-coding downstream 389490 18588016 ~ 18588690 (+)
G23782 NA non-coding downstream 390340 18588866 ~ 18589068 (+)
G23791 NA non-coding downstream 425395 18623921 ~ 18625059 (+)
AMCG00007379 NA other upstream 1505750 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 2788485 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 2880490 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 3678758 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 7555346 10611196 ~ 10613104 (+)
AMCG00007417 NA other downstream 92 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 8552 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 19204 18217730 ~ 18224936 (+)
G23724 NA other downstream 91582 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 368716 18567242 ~ 18570472 (+)

Expression


Co-expression Network