AMCG00007417


Basic Information

Item Value
gene id AMCG00007417
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18198618 ~ 18201960 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007417
ATGCTCCTGCTGATGCTCACACAACAGGGACACGTGAAGTTCAAATCCCTGATGCTGGTGACCAGAGCCACCATCGAGCTGGAGCCGACCAGCGCCATCCCCCCTCCCGTGTCTGAACTGTGCCCCTCGCTCTGCTCGTTCCCACAGATTATCCTGGAGATTAGGAAGGAGGAAGATTACAGGATTCCCATCTGGATTATCCTGGGGAGCACGCTGGGGGGGGTGCTGCTGCTCGCCCTGCTCATCCTGGCTCTGTGGAAGCTGGGATTCTTCCAGCGGCAGAAGCGACACAAGGAGGCAGAGCAGGAGGCCAACGGGAAGGTGATGGAGGAGCGAGACCGCCGCAGACTGGACACCTGCTCTGCGCCCCTGGGGACTCACCCGCCCTTCATTCTCCCCTGCTCAATCAGCTGCAGCTCCAGGCAGGGCAATATGCTCACCCCGCTGCTCCTGGGCTGGACTGTGccccaccaccatcaccacctaCCAACACACAGACCCACCCCAACCTGTACATATGCCCTGGTCTCCGGTAGCACCGCCTCCACTTACTTACCAACCTGGAGACCTTACAGAAGCACTGGCCTGGACGCACATTGTCCTGACTCCCACAGCCAAACTTCATGCCTGTGCCAGCACTTCACTTACACGGTGTTTATTGACGTGACTACGCCCAGCGATCCTGGCTGGGCGCCGCTGTTCTGA
>TU29675
AGAATGCATCCCTCACTGTCCACAATTAAGCTTTCACTGTCTGCTCTCAGGTGAAGTTCAAATCCCTGATGCTGGTGACCAGAGCCACCATCGAGCTGGAGCCGACCAGCGCCATGTTCCTGCAGGAGGACATGCCTGAGAGACAGATTATCCTGGAGATTAGGAAGGAGGAAGATTACAGGATTCCCATCTGGATTATCCTGGGGAGCACGCTGGGGGGGGTGCTGCTGCTCGCCCTGCTCATCCTGGCTCTGTGGAAGCTGGGATTCTTCCAGCGGCAGAAGCGACACAAGGAGGCAGAGCAGGAGGCCAACGGGAAGGTGATGGAGGAGCGGTAACACAGGGCCTCAACCTTGCCCGGCTCCACGCCTGCCACTGAGGCACTTTCCTGTACAGAGACCGCCGCAGACTGGACACCTGCTCTGCGCCCCTGGGGACTCACCCGCCCTTCATTCTCCCCTGCTCAATCAGCTGCAGCTCCAGGCAGGGCAATATGCTCACCCCGCTGCTCCTGGGCTGGACTGTGccccaccaccatcaccacctaCCAACACACAGACCCACCCCAACCTGTACATATGCCCTGGTCTCCGGTAGCACCGCCTCCACTTACTTACCAACCTGGAGACCTTACAGAAGCACTGGCCTGGACGCACATTGTCCTGACTCCCACAGCCAAAGTCAGATGGTTGCTATGAAGGcccacacatttattttccttttatttttggtttatccCTTTCAGGTatgattgtgttattgttattttgtttgtttgttcttcacaGCTTCATGCCTGTGCCAGCACTTCACTTACACGGTGTTTATTGACGTGACTACGCCCAGCGATCCTGGCTGGTGATGAGTAAACTGTCAGAACAGTCAGATCTGGGCCGAGCTGAGCTCGACTGTGACCTCCctgacacacgcagacacagacACCCATAGCACTGCCCTGTTGAGGAACCCCAAGCTTCTGGGGCAACTTTGATTCaggcactggactggactgctttTTGAGATTTCCTAAAATTGTTCACAATCCACACACTGGTCAGGAAATGACCCTATCCCACCAGAAAGCGCTAAACACAGCACTGGCTTGTACGGGGATGATTACTGTGAGCTAGTGAGAAAAGTTTGCGTTACATtgatatttgttaattttattttgggaaGGTCTGTTCAAATGTCCCCAACAAAGGCTCTTATTTAgtttctgttcagttttttttttatacatttcatacattttctataaaaaaaataataataaaaaaaaaaaaaacagcattgcaGTATTCTAAAGCACTTTTATGTTGTAAAAAACTTGAATCTTGTAAATACCTTcatgtgcttttaaaacagaaCAGCAAAACTTCTGTTGTACCTGCACAAGGATTGTGGCATTATCCTGTAACTATAGAGACACGGCGATACTATTTTAACCTTCACACCAGAGAGCGTCTGTGTTCTGGCCCCGCACAACAAACAGCCTTGCTGTTGGAACAGTACGCACAGTACAGCCTTGCCAGTTTTCTCCATAGGGCGCCGCTGTTCTGAGGGGGCTTGGATCTCAGTCTCCTGCAACACTTCTCTAACACAGTCTGCTTCTGTCTCAGGTTCCCACTGCGCTTCTGGtggtgaaattaaatcaatactggCTTCAATCTGGTTTTGTGTGTAGCTCCCAGGTACAGATTTAATCTATAAAATGCAGCTCAAAGTCTTAAACAGACAGGAGCTGAAAGCAATGTAAAAAGGTCCGATTATAGAAGTCATTGGTCCAATCAGATGCTCATTAGGAACACAGTAACAGATCTGAGGTTATGGAGTGAGCCTGGCTCCGTTCAGAGGATTGTCGGGGGGGAACAGTTTTAGTAGACATAAGAGagctataaatatattgtacagtCAACACTTTGAGAAATGAACCCTGCCTGCATCTGTAATATATGTATTCGCTCATGTCAACAGCAAGGTGTGTAAATATGGTAAtgatgccaaaataaataaataaaagtctgaCTTACTTGGGCCAGCACTGCTTTATATATGTACACTGCACAGACCGGATCCCCCGACCCCACCAGCAGCCCAACACATGGAACACAGCCAGGCCCGGGGCCCCGAAGAGAGTGCTCGGATCTGAGGAGGTGTGCATAAAGCAATCGATCATCAATTTACA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007417 False 705 mRNA 0.60 7 18198618 18201335
TU29675 True 2188 TUCP 0.48 3 18198768 18201960

Neighbor

gene id symbol gene type direction distance location
AMCG00007416 NA coding upstream 92 18168450 ~ 18198526 (+)
AMCG00007408 NA coding upstream 135125 18062234 ~ 18063493 (+)
AMCG00007407 anp32a,LOC107700478,LOC107740437,LOC107557695 coding upstream 139662 18054095 ~ 18058956 (+)
AMCG00007404 NA coding upstream 469339 17701160 ~ 17729279 (+)
AMCG00007403 morf4l1,LOC107596963,LOC107686360,LOC107738770 coding upstream 523064 17659682 ~ 17675554 (+)
AMCG00007415 LOC104955851 coding downstream 7668 18209628 ~ 18216895 (+)
AMCG00007428 NA coding downstream 195387 18397347 ~ 18402499 (+)
AMCG00007437 lctl,LOC105892386,LOC102794608 coding downstream 373882 18575842 ~ 18584276 (+)
AMCG00007438 rl4a,rpl4,LOC106561854 coding downstream 388720 18590680 ~ 18596353 (+)
AMCG00007436 tipin coding downstream 417348 18619308 ~ 18621844 (+)
G23642 anp32a,LOC107755092,LOC107700478,LOC107557695,LOC107740437 non-coding upstream 135714 18050143 ~ 18062904 (+)
G23634 NA non-coding upstream 245343 17952551 ~ 17953275 (+)
G23631 NA non-coding upstream 255508 17942776 ~ 17943110 (+)
G23628 NA non-coding upstream 293669 17904558 ~ 17904949 (+)
G23604 NA non-coding upstream 375281 17821766 ~ 17823337 (+)
G23696 NA non-coding downstream 502 18202462 ~ 18204361 (+)
G23780 NA non-coding downstream 384214 18586174 ~ 18586536 (+)
G23781 NA non-coding downstream 386056 18588016 ~ 18588690 (+)
G23782 NA non-coding downstream 386906 18588866 ~ 18589068 (+)
G23791 NA non-coding downstream 421961 18623921 ~ 18625059 (+)
AMCG00007379 NA other upstream 1535918 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 2818653 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 2910658 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 3708926 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 7585514 10611196 ~ 10613104 (+)
G23698 fem1b other downstream 5118 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 15770 18217730 ~ 18224936 (+)
G23724 NA other downstream 88148 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 365282 18567242 ~ 18570472 (+)
AMCG00007452 NA other downstream 805590 19007550 ~ 19014899 (+)

Expression


Co-expression Network