AMCG00007418 (fem1b)


Basic Information

Item Value
gene id AMCG00007418
gene name fem1b
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18202459 ~ 18208020 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007418
GTTGACaacaagaaagagagaagaaaccCCACCGAGCACGACCGAGCTGCTGAGCCCGGGGAGTCGCTGAGAGAGGACGGCGGCCAACCGGCACAAGGGCCCCCTCAGTCGAGTGACCTGCGGGTCGCTCCCTGCACCCCGACCGCTGGGAACCGAGCCGAGCTTGTGCCATTTAGCTGACGTTTCCATTCTCCGTTTGATGAATTAAAACACGTATATCCACGTATGGTTTAATATAACCCTACGTGCTCGCCTGTGGTATCCGTGCTACCCACAGATTTGACCCTAGAGCAGACCTACATCTTCACATAACGTAGGGTCGCTGGCCGTCCGCAGAGGGACCTCTAAACCACCGGCATGTTTTTCGAGTGAGCAGCGTGATCCGTCCTGGGATTTTTAATGGGAGGCGGCCTGCTTTGCGGAGAGTCTAGTTGTGGGCGACTGTTTCTGCGCAGAAGACGGAGGTGTCTCCGGGGAAGGCCAGGCGGCGGGCCTGAATGGAGTCGCTGGCCGCATACGTGTACAAGGCGGCGAGCGAGGGCCGGGTCCTGACGCTCGCCGCCCTGCTGCTCAACCACAGCGAGGTCGAGACCCGCTACCTGCTCGGCCATGTGACCCAGCACGGCGGCCAGCGCTCCACGCCGCTCATCATCGCCGCCCGCAACGGACACGCCAAGGTGGTCCGGCTGCTCCTGGACCACTACCGGGTGGACACCGAGCAGACCGGCACCGTGCGCTTCGACGGGTATGTGATTGACGGGGCAACTGCGCTGTGGTGTGCGGCGGGGGCGGGGCACTTCGAAGTGGTGCGTCTATTGGTCCTACACAATGCCAACGTGAACCACACAACGGTGACAAACTCCACGCCGCTGCGTGCTGCTTGCTTTGACGGGCGTCTGGACATCGTGCGCTACCTGGTGGAGAACAACGCAAACATCTGCATCGCTAACAAGTACGACAACACCTGCCTGATGATCGCTGCTTACAAGGGCCACACTGATGTGGTGCACTTCCTGCTGGAGCGTGGCGCAGACGCCAATGCCAGGGCGCACTGTGGCGCCACTGCCCTGCACTTTGCGGCCGAGGCAGGGCACCTGGACATCGTAAAGGAACTGGTACGCTGCAAGGCGGCCATGCTGGTGAATGGTCATGGCATGACGCCCCTCAAGGTAGCAGCAGAGAGCTGCAAGGCCGATGtggtggagctgctgctggCGCATGCCGACTGTGACCGGGAGAGCCGTGTGGAGGCGCTAGAGCTACTGGGTGCCTCCTTCGCCAATGACCGCGAGAACTACGACATCCTGAAAACCTACCACTACTTGAACCTGGCCATGCTGGAGCGGCACCGGGACTCTGTGCACATCCTGGCCAAGCAAGTGCTGCCACCCGTCGAGGCGTATGGCGGCCGCCGTGAGTGCCGCTCCCCGTGTGAGCTGGAGGCCATCCGCCAGGACCGAGATGCACTGCACATGGAGGGCCTGATCGTGCGTGAACGCATCCTGGGCGCTGACAGCATCGACGTCTCGCACCCCATCATCTACCGCGGCGCCGTTTACGCTGACAACATGGAGTTCGAGCAGTGCATCAGACTGTGGCTGCACGCGCTGGAGCTGCGGCAGAAGGGCAGCCGAAACACGCACAAGGACCTGCTGCGCTTCGCCCAGGTGTTCTCACAGATGATCCACCTAAACGAGCCGGTGCGTGCGCAGGATGTGGAGGCCGTGCTGCGCTGTAGCGTGCTGGAGATCGAGCGCAGCATGGCGCGAGTGCAGGCGGCCCCCGAGCCCGAGCTGCCCGCAGCGCTGGACAACTATGAATCCAATGTCTTCACCTTCCTGTACCTGGTATGCATCTCCACCAAGACGCAGTGCGGCGAGGACGAGCGGTCGCGCCTCAACAAGCATATCTACAACCTGATCCAGCTGGACCCGCGCTCTCGGGACGGCTCCTCCCTGCTGCACCTGGCCGTCAATGCCGGCACGCCGGTGGACGACTTCCACACTAATGATGTGTGCAGCTTCCCCAACGCGCAGGTGAGCAAGCTGCTGCTGGACTGTGGCGCCCAGGTGAACGCTGTGGACCTGGAGGGCAACAGCCCGCTGCACGTCATCGTGCAGTACAACCGGCCCATCAGCGACTTCCTCACTCTGCATGCCATCATCATCAGCCTGGTGGAGGCCGGCGCCCACACTGACATGACCAACAGGCAGAGCAAGACGCCTCTGGACAAGAGCACCACGGGCGTGTCCGAGATCCTGCTCAAAACCCAGATGAAGATGAGCCTCAAGTGCCTGGCCGCTCGCGCCGTGCGGCTCCACCACGTCAGCTACAGGAACCAGATCCCCAAGACGCTGGAGGAGTTTGTGGAGTTCCACTGAGAGGGACTCGCACACAGACCTGCAAACAGCAACACAGACTGTCTTTTAACtcttattgcttttgttttttttcagttcttgtttttaattaaaaaatatggtGCTGGGGATAATTACAGATCAATTAAAACCATAACAACAGAGAATttatgagaatatatatattttaccagattttttttttattttcttgtgagCATGAAGTGTAATTACCAGCACTCTGAAAGGGCATGTTGTAATTCCCATAGGGTGTGGCTtttgtgtggcagtgtgtgctAGTACAGCCTTGAGTGTGGCGGGGGTGTGTATCTGCATCAGTCCTGCTGTGCTGTTTGTCGGTGCGAATGTGTCCCAGAGAAACTTGACGGCAGAGCTCTAAGATGGAGCGGCAGGTTAATGCCGGCACGGTGCAGACGCCACATTAGAACTCAAcaaatgctgtttaaaaataaaagtaagaacATGTTGTCAGTGCAGCGGCGAGGCCGGCAGCCAGAGCAGCAGTGTGGGGGAGGAGAGCGAGTCTGACAGAGAGAGCGCCTCCCACAGCTGCCCTGCATCATCTGCATGGGCTGCATCATCTGCAGTGTTCCTGTTTAACTGCTTCTTTGCCGGCGTGGCTGGGCGCCCCCCCCCAGCTGCAGGCCCTTCCTGGCAGTGTTTGAGTGTCTGTTTCAGACTGCAGTGAGGTGAAGCAGGATTGAGCAGAGAGGCAGCGTTGTTGGCAGCTCCGTAATACCACTGCGCTTCTCTTCATCAGCAGGTTGTCACTTAattgccagtgtttttttttttttatatatatacatattttttttaattttagtcatgtaattttgtattttttaatttatttcatactAAAGAAGGTTAAAATAGCCCCAGAGTTAAAGCTGTGGGGGGCTTTTGGAGGGCACAGCACTGAGATGCTCTTGGGTATCTTTTACATCACAGAGCAGGCTTTTGGAAGAAAGAGCCATTGGTACTGTACCTAAAAAGAAATCAGTCTGTTAGGGGCAGATCTCGCTGCTTTACGTTATGGCCACAGTGGTCATCAGGCTTGAGAGGGAGGGAAGTTGAACACAGCGCAGGGTGTCACTCTGTGGGGGAGTTGATACAGATCCACTACTGGGCTGCACTTTATTCTTATGATGATAGTCCCTATCAATCTTTAGGTAACGCCTctttttattcaaaattaaaaaggcagttgaaaattatattttaaaaaatctgcCAGCTATATTCTAAAgctaaaaattacaaaataatctataaaagGAAGAGGGAGGAGTGTAGCACTGTGGTGGGGGTGGCGGGGTCTGGTCTCGCGTCTCCAGCACAACCTGCCGCTTTTTCCTGTTCCATATCTTTGCAGTTGTGCCGATTCTTGAGTCATTGTAAATGCATGTTGCACCTGATGAACAGtcattgttttgcattcaaaGTTCAGGGTTCAGTCCATATGCTGCATGCTGGATATCATTGGCAGCGCTACACAGCCGAGTAAGGCCTCAGAGCAGGTTCTGGGGTTAAAAGAAGTGTGAAaacatgtctgtatatatgatGTTATGCAACACCATCTCCAGCTACCATGGTTTAAGTAACTCCTCTGTAATTTAGTTCTCATTGTTGGGTGTTTTTAAACGACCTACAATTACAGTGCACTCAGCCTTCTGGATGTCAGCTTGCGTGTGAactgcgggggggggggggggggggggggggggggggggg
>TU29680
taattttgtattttttaatttatttcatactAAAGAAGGTTAAAATAGCCCCAGAGTTAAAGCTGTGGGGGGCTTTTGGAGGGCACAGCACTGAGATGCTCTTGGGTATCTTTTACATCACAGAGCAGGCTTTTGGAAGAAAGAGCCATTGGTACTGTACCTAAAAAGAAATCAGTCTGTTAGGGGCAGATCTCGCTGCTTTACGTTATGGCCACAGTGGTCATCAGGCTTGAGAGGGAGGGAAGTTGAACACAGCGCAGGGTGTCACTCTGTGGGGGAGTTGATACAGATCCACTACTGGGCTGCACTTTATTCTTATGATGATAGTCCCTATCAATCTTTAGGTAACGCCTctttttattcaaaattaaaaaggcagttgaaaattatattttaaaaaatctgcCAGCTATATTCTAAAgctaaaaattacaaaataatctataaaagGAAGAGGGAGGAGTGTAGCACTGTGGTGGGGGTGGCGGGGTCTGGTCTCGCGTCTCCAGCACAACCTGCCGCTTTTTCCTGTTCCATATCTTTGCAGTTGTGCCGATTCTTGAGTCATTGTAAATGCATGTTGCACCTGATGAACAGtcattgttttgcattcaaaGTTCAGGGTTCAGTCCATATGCTGCATGCTGGATATCATTGGCAGCGCTACACAGCCGAGTAAGGCCTCAGAGCAGGTTCTGGGGTTAAAAGAAGTGTGAAaacatgtctgtatatatgatGTTATGCAACACCATCTCCAGCTACCATGGTTTAAGTAACTCCTCTGTAATTTAGTTCTCATTGTTGGGTGTTTTTAAACGACCTACAATTACAGTGCACTCAGCCTTCTGGATGTCAGCTTGCGTGTGAactgcggggggggggggggggggggggggggggggggggtccttgAGGCTGctgtctctctgcctgcctgcctccctgtAGTCCAGGCACTTTTGGTTTTATTGCATCTCGGCTATTTCTCGAGCGGCCATGAGATGTCAATCAGACACACAAATAGGCAGCAAACCTGCTGGACAGAGCCCTGCCAGGCTGCATTGGCATCTTTGTGGTGGCTGCCCTGGACTTGCAGTTTAAAGCAGGGCTCAGTGTGCCCAGGCTGCAGAGGTCGACATGTAGATGCACCTGTTGATGGTTCATGCTGTATTTCCAGAGAATGCCAATGTCTGGTCTCATATGCGTCTTGTACTGGACACCCGTCTGTCCCTGGTGTGCGCATGCTCTGGCTGTTTACCCGAGGGGATGCATGTCTCCAGTCTCCACCCCCGTTTCTTGAGCCATGGGAACGCTGTCGTGTCTCGTGGGTCTGACTGAGCAGGCTTGTCTGAGCTGAATGTGAATGTAAGGGCTTTCTGATCAACGACACAAACGCTGTCGTGTGTTGACACTTCCTGTGTAACCAGCGATTGTACTGtaaatgggtt

Function

symbol description
fem1b Predicted to be active in nucleus. Orthologous to human FEM1B (fem-1 homolog B).

NR:

description
PREDICTED: protein fem-1 homolog B

GO: NA

KEGG:

id description
K10349 FEM1B; Fem-1 homolog b

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007418 True 4118 mRNA 0.55 2 18203001 18208020
TU29680 False 1448 lncRNA 0.48 1 18202459 18203906

Neighbor

gene id symbol gene type direction distance location
AMCG00007413 NA coding downstream 86700 18113775 ~ 18115759 (-)
AMCG00007410 coro2b,LOC105906559,LOC106562700 coding downstream 124927 18065426 ~ 18077532 (-)
AMCG00007412 LOC107100407 coding downstream 154241 18038835 ~ 18048218 (-)
AMCG00007409 LOC105906560,LOC106562708,LOC106562601 coding downstream 210599 17980242 ~ 17991860 (-)
AMCG00007411 NA coding downstream 223937 17962721 ~ 17978522 (-)
AMCG00007419 pias1,LOC103372741,LOC103141277,LOC103466533,LOC106521199,LOC108229849 coding upstream 16311 18224331 ~ 18237308 (-)
AMCG00007420 NA coding upstream 57394 18265414 ~ 18275251 (-)
AMCG00007422 NA coding upstream 82072 18290092 ~ 18294570 (-)
AMCG00007427 NA coding upstream 92835 18300855 ~ 18304318 (-)
AMCG00007426 NA coding upstream 98857 18306877 ~ 18310368 (-)
G23676 NA non-coding downstream 128454 18072055 ~ 18074005 (-)
G23663 NA non-coding downstream 139467 17972906 ~ 18062992 (-)
G23629 NA non-coding downstream 296051 17906101 ~ 17906408 (-)
G23624 NA non-coding downstream 379141 17821767 ~ 17823318 (-)
G23620 NA non-coding downstream 427613 17774551 ~ 17774846 (-)
G23745 NA non-coding upstream 106131 18314151 ~ 18403277 (-)
G23799 NA non-coding upstream 411265 18619285 ~ 18620731 (-)
G23813 NA non-coding upstream 504057 18712077 ~ 18714368 (-)
G23839 NA non-coding upstream 569825 18777845 ~ 18778069 (-)
G23840 NA non-coding upstream 571151 18779171 ~ 18779608 (-)
G23661 NA other downstream 143510 18055470 ~ 18058949 (-)
AMCG00007375 NA other downstream 1580554 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 1856879 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 1888427 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 4169247 13981374 ~ 14033212 (-)
G23838 NA other upstream 568340 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 1583681 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 1707126 19915146 ~ 19923153 (-)
AMCG00007494 NA other upstream 1963309 20171329 ~ 20222004 (-)
G24217 NA other upstream 2123493 20331513 ~ 20331811 (-)

Expression


Co-expression Network