AMCG00007419 (pias1,LOC103372741,LOC103141277,LOC103466533,LOC106521199,LOC108229849)


Basic Information

Item Value
gene id AMCG00007419
gene name pias1,LOC103372741,LOC103141277,LOC103466533,LOC106521199,LOC108229849
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18224331 ~ 18237308 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007419
TGTAATGAGGCGACACTGAGGAGCTGTCGGCTGCAGACCAGGCAGCCCCCTGATTGTTCCCACTTCCTGTCTGAGTGGGATGATAATGGGCTACAGCAAATGGTTATGAGCCTTCGTGTTTCGGAGCTCCAAGTACTACTGGGATACGCAGGGCGGAACAAGCACGGACGCAAGCACGAACTCTTAACAAAAGCACTGCACCTCCTGAAGGCCGGCTGCAGCCCCGCTGTGCAAATGAAAATCAAAGAACTGTACAGGCGCAGGTTCCCCACCAAAATGGTGACGCCGGCGGAGCTGGCCCTGCCCAGCGTGCACTCCACCACTGCACCGCTGCCCTCCGGCCTGCCCCAGCTGGGTTTCGAGGGCCACGCTGCCACCTCGCCCCTGCTGCCCGCCTCCCTGCTGGGGCCCAAGCACGAGCTGGACCTGCCACACCTACCCTCTGCCCTGCACCCTGTGCACCCCGACGTCAAGCTGCAGAAACTGCCTTTCTACGACATGCTGGACGAGCTGATCAAACCCACCAGCCTGGCTTCGGATAACAGCCAGCGATTTCAGGAAAcgtgttttgcttttgcattaacaCCTCAGCAAGTACAACAGATCAGCAGCTCAATGGACATCTCTGGGACCAAATGTGACTTTACTGTTCAAGTTCAGCTGAGgTTTTGTCTGTCGGAAACGAGCTGTCCTCAGGAAGACCACTTCCCACCCAACTTGTGTGTGAAAGTGAACGGGAAGCCCTGCAACCTCCCTGGATATCTTCCTCCAACCAAAAACGGTGTAGAACCAAAGCGACCCAGCCGCCCCATCAACATTACCTCACTGGTGCGGTTGTCCACAACAGTACCCAACACCATCGTGGTGTCGTGGACAGCGGAGATTGGAAGGCTGGGGAAGATGCGGCTGATGATCCCTTGCCGAGCGCTGACCTGCTCACACCTGCAGTGCTTCGACGCCACACTCTACATCCAGATGAACGAGAAGAAGCCCACGTGGGTGTGTCCTGTCTGCGACAAGAAAGCCCCTTACGAGCACCTCATCATCGACGGGTTGTTCATGGAGATCCTGAACAGCTGTGTTGACTGTGACGAAATCCAGTTCAAGGAGGACGGCAGCTGGGCCCCCATGCGCTCGAAGAAGGAAGTGCAGGAAGTGTCCGCGTCGTACAACGGCTCGGAAGGTGCCTGTCGGACCTCGATGCCCGAGCACAGGCTCAGCAGCTCGTCCGGCAACAAGAAGGTGGAGGTGATCGACCTGACTCTGGACAGCTCCtccgaggaagaggaggacgaCGAGCCTCCCCCGAAGAGAAGCTGCCCCTCCCTGTCCCCGGCGTCGCCGCCCGTCAACAAGGGGGTGTTGAATCTGCACCACCAGGCCTCTCCGGTGGCCCGGACTCCCAGCATGCCCGCGGTGGACACCAACTacatcccccccccaccgcctCTCATCCAGGACTACCGCCACTCCTACCACACACTGCCCTACGAACTGCAAGGTCTTGATTTCTTCTCCTTCTTACAAGGCGACAATCAGCATTACAGCACCAACCTGCTGGTggcagcggcggcggcggcatCCGCCTCGGAAGAGCACGACATGCTGCACCCGTCGCTCAACCGCTTCCTGCCGTACAGCCCCTCCCAGCTGTACCTGGAGCAGCCGGGGACCCCGGTGAGCAGCACGCTGGCGCCGGGCAACGgggggagcagcagcagcagcagcagcagcctggtGTCGTCCAGCAGCCTGCGGGAGAGCCACGCCCACCCGGGCCCCACCAGGGCCACGGCGGAAGCGGCCGCCGCCATCTACGGCTCCATCCCCGACGTCATCTCACTGGACTGACTGCCGGAGTGCGGCGCGGTCTGATCTCCTCTACTAATGtagacagaaacaaacacacttaaaaagaaaaaaataaacaaaggaaaaaaaaaagtaggtcttttttttttaagatacaaTGAACGATGCTGTGtacagagaacaaaaaaatatattttcagttttacttttgtATATAAACTTAGGACGTTGCCTGTCCAGTGAGTAACTTCAGTTGATATTTTTTGTGGATACTGAAGATTTTTTCACAGTTATACATTTGTTgtccctattattattattattattattattattattatt

Function

symbol description
pias1 Enables SUMO ligase activity and enzyme binding activity. Involved in positive regulation of protein sumoylation and protein sumoylation. Located in nucleus.

NR:

description
PREDICTED: E3 SUMO-protein ligase PIAS1-like

GO: NA

KEGG:

id description
K04706 PIAS1; E3 SUMO-protein ligase PIAS1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007419 True 2154 mRNA 0.56 12 18224331 18237308

Neighbor

gene id symbol gene type direction distance location
AMCG00007413 NA coding downstream 108572 18113775 ~ 18115759 (-)
AMCG00007410 coro2b,LOC105906559,LOC106562700 coding downstream 146799 18065426 ~ 18077532 (-)
AMCG00007412 LOC107100407 coding downstream 176113 18038835 ~ 18048218 (-)
AMCG00007409 LOC105906560,LOC106562708,LOC106562601 coding downstream 232471 17980242 ~ 17991860 (-)
AMCG00007411 NA coding downstream 245809 17962721 ~ 17978522 (-)
AMCG00007420 NA coding upstream 28106 18265414 ~ 18275251 (-)
AMCG00007422 NA coding upstream 52784 18290092 ~ 18294570 (-)
AMCG00007427 NA coding upstream 63547 18300855 ~ 18304318 (-)
AMCG00007426 NA coding upstream 69569 18306877 ~ 18310368 (-)
AMCG00007424 NA coding upstream 82660 18319968 ~ 18329876 (-)
G23676 NA non-coding downstream 150326 18072055 ~ 18074005 (-)
G23663 NA non-coding downstream 161339 17972906 ~ 18062992 (-)
G23629 NA non-coding downstream 317923 17906101 ~ 17906408 (-)
G23624 NA non-coding downstream 401013 17821767 ~ 17823318 (-)
G23620 NA non-coding downstream 449485 17774551 ~ 17774846 (-)
G23745 NA non-coding upstream 76843 18314151 ~ 18403277 (-)
G23799 NA non-coding upstream 381977 18619285 ~ 18620731 (-)
G23813 NA non-coding upstream 474769 18712077 ~ 18714368 (-)
G23839 NA non-coding upstream 540537 18777845 ~ 18778069 (-)
G23840 NA non-coding upstream 541863 18779171 ~ 18779608 (-)
AMCG00007418 fem1b other downstream 16311 18202459 ~ 18208020 (-)
G23661 NA other downstream 165382 18055470 ~ 18058949 (-)
AMCG00007375 NA other downstream 1602426 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 1878751 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 1910299 16237461 ~ 16314032 (-)
G23838 NA other upstream 539052 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 1554393 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 1677838 19915146 ~ 19923153 (-)
AMCG00007494 NA other upstream 1934021 20171329 ~ 20222004 (-)
G24217 NA other upstream 2094205 20331513 ~ 20331811 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012765 pias1b coding NC_007129.7 CM002902.2 19990412 ~ 20025364 (+)
grasscarp (Ctenopharyngodon idella) CI01000013_04219612_04232778 PIAS1, PIAS1B coding CI01000013 null 4219586 ~ 4233151 (-)