AMCG00007420


Basic Information

Item Value
gene id AMCG00007420
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18265414 ~ 18275251 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007420
ACTTCCAGGGATGGAGGCGATTCCCAGCCAACTGACAGCGGGACGAGACTCCAGCTCTTCCCCGAACTCCAAGCAGGAACTCCAGCCTTACTCCGGCTCCAGCTCCCTCAAGCCCAACCAGGTCAGTGAGACCGTGCTGTACGGAGTGCCCATCGTGTCCCTGGTGATCGACGGTCAGGAGAGGCTTTGCCTGGCGCAGATATCCAACACTTTACTAAAGAACTACAGCTACAACGAGATCCACAACCGGCGGGTGGCCCTGGGCATCACCTGCGTGCAGTGCACCCCTGTGCAGCTGGAGATCCTGCGGAGGGCGGGGGCCATGCCCATCTCCTCCCGGCGCTGCGGCATGATCACCAAACGCGAGGCCGAGAGGCTGTGCAAGTCCTTCCTGGGGGCGCACAACCCACCCAAGCTGCCCGAGAACTTCGCCTTCGACGTGTCCCACGAGTGCGCCTGGGGCAGCCGGGGGAGTTTCATTCCGGCCCGGTATAATAGCTCCAGGGCCAAGTGCATTAAGTGCACCTACTGCAACATGTACTTTTCTCCCAACAAGTTCATCTTCCACTCGCACCGCACCCCGGAAGCCAAGTACACGCAGCCAGACGCTGCCAACTTCAACTCCTGGAGGCGCCACCTGAAACTCACAGACAAAAACACCTCGGATGATCTGGCCCATGCGTGGGAAGATGTAAAGGCCATGTTCAACGGGGGCAGCCGCAAGAGGACGCTGCCCATCAGCGGGTCAGGCGGGGGCTCCTCTTCCCTAAAACCTCAGGGCTCCGGCAGCCTGCCCCCGGGCTCCCCCGAGGTCCCCCACAAGACTCTGCGCTGCAGCGAGGAGGAGCGGGGCGGCCTCAGCCTGGGCAACGGCGTGCGCAGCTACCCGGTAATCCCCGTGCCAAGCAAGAGCTTCGGGATGCTGCAAAAGATCCCACCGCCCCTCTTCCCGCACCCCTACGGATTCCCCGCTTTTGGATTGTGTCAAAAGAAAGACGACAGTGTGGGGATTGGAGAGCAGAATAAGAGCAATCTGCCCGGCGTGTTTTGGCCGGGCGCAAAGGACAGCGTCTACCCCTCATTCCCCATGTTCTGGCCCACCACTGCCAGTCTGCCCGTGCCCCCCTACCCACAGAGTCAGCCCAAGCCCACGGCCGAGTTGCTCAGCCGGCAGAGTGAGCTGGACGTATCGGAGCAGAGCGACCGCAGCACAAACACCCCCAAGGACAGCCTGGCGGACAGCGAGAGGTGCTCCAGCACGCAGTCCACCAGGAACGAGGAGGACAAGTCAGGGGACGAGGCCCGGTCCACAGAAGGGTCGGTCATGACTCCCAGGAAGATCAGCTACATCTCCGCCTTCAGGCCGGTGGTCAAAGACGCCGAGAGCATAGCCAAGCTGTACGGCAACAGGGAGCCGTACAACGGGGCCCGCTCGGGTTACCTCTCGCCAGACTTCATGAGCGAGAGCTCCAGTTACAGGTCGGTGTCACCAGGCATGGACAGCGTGGACGAGCCGGAGGTGGACGTGGAGTCGCACAGGATCCCAGAGGACGAAGAGTCCCTTCAGCTGTCGGTGGAGGACCGccacagccccccacccctgcccctTCCCCATGCCAGCCCCGGCAAGAGCCAGGAGCCCGGGGTCGAGCTAAGGGCCGCCTCGGTGCACAGTCAGAGAGCCAGTTTCAGTGAAGGGTCCTCGGACGAGGAGAGGCAGGGCGACCCGCTGCCTGACAGCAACAGCACCACGGCGGCTTACGAAGTGTACACACATGAAAGGGAAGATCAGGTGCAGTCCTTGAGCGCCCCGGTTCCCTTCGCTTCCTCCGGCAGTTACGCCAACAGCCCGGCGGACACCAACGaTGAATTGCAGAAACAGCTGGTGGAACAGGTGGAAATCAGGAAAAAGCTGGAACGGGAATTCCAGAGTCTGAAAGATAATTTTCAGGATCAGATGAAAAGGGAGCTTTCGTACAGAGAAGAGATGGTTCAACAGCTCCAGATTGTCCGAGATACTCTGTGCAGTGAGCTGGACCAGGAGAGGAAGGCTCGCTATGCCATTCAGCAGAAGCTCAAAGTTCAGTCTATccagaggaagaaaatgaattcagttagacagacacacagacgggCAGCAGACAGGCCCGCCGTGGTTGTAAGTGATGTATCCACTTTCTCCCCAGAAGCTCACGACGCGCTTCACCATTTCTCCTATGCTGACCCCTCGGCACTGCACTGGAACCTGCTCCTTCAAGCCGCCTCTGCTGCCCCCATAACCCGGGCCCAGCCGCCCCCGGACCTGGACCCGGACTCGAACACAAGCCATTACTTCCCAGCACCTGGACTGTACATACAGAGGGGTCAGACTATCGCCGCGCCGTGGGCAGACTTT

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007420 True 2395 mRNA 0.61 7 18265414 18275251

Neighbor

gene id symbol gene type direction distance location
AMCG00007419 pias1,LOC103372741,LOC103141277,LOC103466533,LOC106521199,LOC108229849 coding downstream 28106 18224331 ~ 18237308 (-)
AMCG00007413 NA coding downstream 149655 18113775 ~ 18115759 (-)
AMCG00007410 coro2b,LOC105906559,LOC106562700 coding downstream 187882 18065426 ~ 18077532 (-)
AMCG00007412 LOC107100407 coding downstream 217196 18038835 ~ 18048218 (-)
AMCG00007409 LOC105906560,LOC106562708,LOC106562601 coding downstream 273554 17980242 ~ 17991860 (-)
AMCG00007422 NA coding upstream 14841 18290092 ~ 18294570 (-)
AMCG00007427 NA coding upstream 25604 18300855 ~ 18304318 (-)
AMCG00007426 NA coding upstream 31626 18306877 ~ 18310368 (-)
AMCG00007424 NA coding upstream 44717 18319968 ~ 18329876 (-)
AMCG00007425 NA coding upstream 67772 18343023 ~ 18346193 (-)
G23676 NA non-coding downstream 191409 18072055 ~ 18074005 (-)
G23663 NA non-coding downstream 202422 17972906 ~ 18062992 (-)
G23629 NA non-coding downstream 359006 17906101 ~ 17906408 (-)
G23624 NA non-coding downstream 442096 17821767 ~ 17823318 (-)
G23620 NA non-coding downstream 490568 17774551 ~ 17774846 (-)
G23745 NA non-coding upstream 38900 18314151 ~ 18403277 (-)
G23799 NA non-coding upstream 344034 18619285 ~ 18620731 (-)
G23813 NA non-coding upstream 436826 18712077 ~ 18714368 (-)
G23839 NA non-coding upstream 502594 18777845 ~ 18778069 (-)
G23840 NA non-coding upstream 503920 18779171 ~ 18779608 (-)
AMCG00007418 fem1b other downstream 57394 18202459 ~ 18208020 (-)
G23661 NA other downstream 206465 18055470 ~ 18058949 (-)
AMCG00007375 NA other downstream 1643509 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 1919834 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 1951382 16237461 ~ 16314032 (-)
G23838 NA other upstream 501109 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 1516450 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 1639895 19915146 ~ 19923153 (-)
AMCG00007494 NA other upstream 1896078 20171329 ~ 20222004 (-)
G24217 NA other upstream 2056262 20331513 ~ 20331811 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_04012800_04017022 SKOR2 coding CI01000304 null 4012800 ~ 4017277 (-)