AMCG00007433


Basic Information

Item Value
gene id AMCG00007433
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18567242 ~ 18570472 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007433
GTGTAATATCATAGTATTATATAATGTAGTGCAATGCAATGtagtgtaataaaatatactgttatgtaatgtattatCACTGTGTCAGACACATACACTTATATAGCACATCATGCACACGAACATTCCTGATTTTACACTTGTTActaagctttttattttaaaaatctatcaCTTCTGCACACTACTCCTAACCTCCTCATTTCTACAACTCCTACACCATCACTGATACTAACCTGCAAACTGCCATATAATGcctattcattaatatattatgtaaacaaataatagccacacacagatacaattttagttgttgttattatcgCTCTAAATAACCATAATTACGGATCCTGACTTTAATACATCAAGGAAAGCTATTACACAATAAATGCAATCCAATCATATGCTATATTCTAGTTTTAGGTGCTGAAGTGCTCGTGTGCGTTGCTGTTCTGAACCAGGAGGTGTCGCCATTGGACcaaaatatatagatatcaGCAAACTGTACTTAAAGTGTCCACCAGGGGCTGGTCCTTGCCGGAGAAGACTTGCACGTAGCTGCGGACTGTGCTTGCCTGCTCGCCGGTGTGCGCGCCTGGGTTCACACGGTCAATGTCCATCAGCCGCCCGTTCACAGTGCCATGCTGTCCGGGTCTGCCGGGCGGTGATCTCTGCTGGCCTGCAAACACGAAGCGACAGAAGCCCGGACTGAGACCCAGCATGCAGGCTGCTGCCGCCCGCACTGCCGCTTCATAGACACTGCGCTGTGCTCAGGGCCCGGCCTGCCCCTCGGGCCGCCCGGGAGATACCCGACCGCTGCTGGGAGGGATGCTACAGAGTCCTTGCTGTGACCATGCTGAGTCGCCTGCAGGAGctgaagaaggaggaggagacgCTGCTGAAGATCAAGGCCATGCTGCAGGACCAGCTCAATAGGCTGAAGGTGGAGGAGCTGGCCCTCAGGTCGATGATTAGCACAGAGCGGGAGGACAGCCCGGCACAGCccccggtcactgagaccACTGGGCAGCTGGACGATGAGCAAATCATTAATCAGATGGAGCTGCAACTGAGTGCTACCATGGACCAGGAGatggaggaagaagaggaggaggaggaggatgaggaggaagaaGGGGAGGAGTACTGACCCACCAGTTCCTCGGGCTGACTTGTGACCCACTGCAGCACAGATCTGCAGGCCTGACACAACCCCGTCCTTCCTGCTGTTACTCCCAATTCGAGTCTTGCACATCAGGAACAAAACttatctgtatatgtgtatatatttatctgcactattttgtgcatctgtttgtttttttgtgttttgctgttttcaATCTTTCCGATTGCTCTGCTGCTAAGGCACAATGTTATTCCTTCTCCTGGGGGCTGCAGGAGACCGGTACTGCACAGGGCCCGTCTCCACCTCGAGTCTTTTATAAATGTTCCCCGTAGgaaaaaagcacattaaagTGTAGTAAAGTGCAGTTAAAAATGTTACTGTGGTGTGGTTACAGCCAGACCGTGATGCAAGGCATTGGAGGCCTGGTATAAGCACAGTAAAAGCATATGAACACAGCATTGCCATACAACTTGGCAATGGTAAATATTCAGCAGGGCTGAGACAGAGTTGTTTTCATGGGGGGGCAGTGgagggttttctttttctgtgcatGTCAGTCGCAGCATGAAAAGAGTAGCCACCGCATGCGTAACCTGCCAGGTGTGGgtagtgagtgagtgagtgagtttgtgtgtgtttctttctgttgttgttttcttgttttatatgATAGTTTCATTTTATGCTGCCTGGAAACCGGTGCGAGTCCCCAGCTGTccctgcacacagagagagaggactcGCAGCCCAGACCTTTCTTTCGTGATATGGtactccacccccccaccccccgcaaTGTTCTGTGATACTATTTGAACCCCTTATCCCCCACTGTTTGAGAGGCAATTTCCCACGAGTGTTTTTCAGTGCAGCCCTCTGCCGTTATCGCTGAAATCAGGAGGGCCGGGCCCGTGTGGCGGGGggctgtgtgcttgtgtgacTGGAGCCTTGGACCGCTGCAGAGCAGCGTTACGTGCGTTACGTTctcactgtacatacaataAAGGATGGTggggacaacaacaacaaaaaaaaa
>TU29768
GGGCTGGTCCTTGCCGGAGAAGACTTGCACGTAGCTGCGGACTGTGCTTGCCTGCTCGCCGGTGTGCGCGCCTGGGTTCACACGGTCAATGTCCATCAGCCGCCCGTTCACAGTGCCATGCTGTCCGGGTCTGCCGGGCGGTGATCTCTGCTGGCCTGCAAACACGAAGCGACAGAAGCCCGGACTGAGACCCAGCATGCAGGCTGCTGCCGCCCGCACTGCCGCTTCATAGACACTGCGCTGTGCTCAGGGCCCGGCCTGCCCCTCGGGCCGCCCGGGAGATACCCGACCGCTGCTGGGAGGGATGCTACAGAGTCCTTGCTGTGACCATGCTGAGTCGCCTGCAGGAGctgaagaaggaggaggagacgCTGCTGAAGATCAAGGCCATGCTGCAGGACCAGCTCAATAGGCTGAAGGTGGAGGAGCTGGCCCTCAGGTCGATGATTAGCACAGAGCGGGAGGACAGCCCGGCACAGCccccggtcactgagaccACTGGGCAGCTGGACGATGAGCAAATCATTAATCAGATGGAGCTGCAACTGAGTGCTACCATGGACCAGGAGatggaggaagaagaggaggaggaggaggatgaggaggaagaaGGGGAGGAGTACTGACCCACCAGTTCCTCGGGCTGACTTGTGACCCACTGCAGCACAGATCTGCAGGCCTGACACAACCCCGTCCTTCCTGCTGTTACTCCCAATTCGAGTCTTGCACATCAGGAACAAAACttatctgtatatgtgtatatatttatctgcactattttgtgcatctgtttgtttttttgtgttttgctgttttcaATCTTTCCGATTGCTCTGCTGCTAAGGCACAATGTTATTCCTTCTCCTGGGGGCTGCAGGAGACCGGTACTGCACAGGGCCCGTCTCCACCTCGAGTCTTTTATAAATGTTCCCCGTAGgaaaaaagcacattaaagTGTAGTAAAGTGCAGTTAAAAATGTTACTGTGGTGTGGTTACAGCCAGACCGTGATGCAAGGCATTGGAGGCCTGGTATAAGCACAGTAAAAGCATATGAACACAGCATTGCCATACAACTTGGCAATGGTAAATATTCAGCAGGGCTGAGACAGAGTTGTTTTCATGGGGGGGCAGTGgagggttttctttttctgtgcatGTCAGTCGCAGCATGAAAAGAGTAGCCACCGCATGCGTAACCTGCCAGGTGTGGgtagtgagtgagtgagtgagtttgtgtgtgtttctttctgttgttgttttcttgttttatatgATAGTTTCATTTTATGCTGCCTGGAAACCGGTGCGAGTCCCCAGCTGTccctgcacacagagagagaggactcGCAGCCCAGACCTTTCTTTCGTGATATGGtactccacccccccaccccccgcaaTGTTCTGTGATACTATTTGAACCCCTTATCCCCCACTGTTTGAGAGGCAATTTCCCACGAGTGTTTTTCAGTGCAGCCCTCTGCCGTTATCGCTGAAATCAGGAGGGCCGGGCCCGTGTGGCGGGGggctgtgtgcttgtgtgacTGGAGCCTTGGACCGCTGCAGAGCAGCGTTACGTGCGTTACGTTctcactgtacatacaataAAGGATGGTggggacaacaacaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007433 True 2168 mRNA 0.49 4 18567242 18570472
TU29768 False 1633 TUCP 0.54 4 18567769 18570464

Neighbor

gene id symbol gene type direction distance location
AMCG00007428 NA coding upstream 164743 18397347 ~ 18402499 (+)
AMCG00007415 LOC104955851 coding upstream 350347 18209628 ~ 18216895 (+)
AMCG00007416 NA coding upstream 368716 18168450 ~ 18198526 (+)
AMCG00007408 NA coding upstream 503749 18062234 ~ 18063493 (+)
AMCG00007407 anp32a,LOC107700478,LOC107740437,LOC107557695 coding upstream 508286 18054095 ~ 18058956 (+)
AMCG00007437 lctl,LOC105892386,LOC102794608 coding downstream 5370 18575842 ~ 18584276 (+)
AMCG00007438 rl4a,rpl4,LOC106561854 coding downstream 20208 18590680 ~ 18596353 (+)
AMCG00007436 tipin coding downstream 48836 18619308 ~ 18621844 (+)
AMCG00007440 NA coding downstream 51400 18621872 ~ 18623043 (+)
AMCG00007439 megf11,LOC104967286 coding downstream 85094 18655566 ~ 18673142 (+)
G23696 NA non-coding upstream 362881 18202462 ~ 18204361 (+)
G23642 anp32a,LOC107755092,LOC107700478,LOC107557695,LOC107740437 non-coding upstream 504338 18050143 ~ 18062904 (+)
G23634 NA non-coding upstream 613967 17952551 ~ 17953275 (+)
G23631 NA non-coding upstream 624132 17942776 ~ 17943110 (+)
G23628 NA non-coding upstream 662293 17904558 ~ 17904949 (+)
G23780 NA non-coding downstream 15702 18586174 ~ 18586536 (+)
G23781 NA non-coding downstream 17544 18588016 ~ 18588690 (+)
G23782 NA non-coding downstream 18394 18588866 ~ 18589068 (+)
G23791 NA non-coding downstream 53449 18623921 ~ 18625059 (+)
G23804 NA non-coding downstream 144199 18714671 ~ 18719794 (+)
G23724 NA other upstream 274904 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 342306 18217730 ~ 18224936 (+)
G23698 fem1b other upstream 358934 18207078 ~ 18208308 (+)
AMCG00007417 NA other upstream 365282 18198618 ~ 18201960 (+)
AMCG00007379 NA other upstream 1904542 16624390 ~ 16662700 (+)
AMCG00007452 NA other downstream 437078 19007550 ~ 19014899 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other downstream 480505 19050977 ~ 19056133 (+)
AMCG00007483 NA other downstream 1368698 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 2489687 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 3561101 22131573 ~ 22134714 (+)

Expression


Co-expression Network