AMCG00007452


Basic Information

Item Value
gene id AMCG00007452
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19007550 ~ 19014899 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007452
ATGCACAGTGCTAGCAGTGTAAGTGGTCCACTCATTGAACCCCACAGGTCCTGTGTGGGGATGCAGCAGATCAACCAGCCCCCCCTGCTGCGAGAGGCGGTGCGCGCCAGCTTGGAGAGGGACCCCGTGGCCGCTGACCTCCGCTGCAGCCTGTTCATCGCCGCCGCACAGAGCTACAAGCGGGACTCCGTCCTCCGCCCCTTCCCCCCCAGCTACGTCAGCGGAGAGAACAAGGAGTTTGACGCCTTGCTGGAGGATGTGAGCTCTGTCCCGGGCGTGAGGCAGCTGGGGCGCTACAGGCCGGGAGAAGGAGAGACGCAGCTGTCCCTCGTCCACTGGGTTTTATCTGCCAAGAACTTCACTGTGAAGACGCTGCAGAGAGAGGAGGTAGGCTGTGACTGTTTGTCACCCCGAGGACACCTCAAGCAGGAAGAGTGGCACATTGTGCACAAGTATGCCAAAATCCAGGAGCTGACAGAGTGTCAGGGGGCGTCCATCCCCGCCCCAGACTTCCTGTTTGAGCTGGACTACTGTGACCAAATGAATACCAGGTTCGAGGAGAGCAGAGGGGGTCGCGACCTCATCTATGCCTTCCATGGCAGCCGTCTGGAGAACTTCCACTCCATCATCCACCATGGCCTGCACTGCCATCTCAACAAGGCGAGTGTGGCTCCTACCTCACTGTTTGGTGAAGGCACTTACCTCACCAGTGACCTCAGCTTGGCTCTCCTCTACAGTCCCCATGGCAGCGGGTGGCGCGAGTCTCTGCTGGGGCCGTTGCTAAGCTGCGTGGCCGTGTGCGAGATTGTGGACCACCCTGACGTCAAGTGTCAGGTGAAGAAGAGAGACTCCGAGAGCATCGACAGGCACAGGGCGCGGGTGAGGAACAGCGAGGGTGGTGACGTGCCCCAGAAGTACTTTGTGGTGACCAACAACCAGCTGTTGCGAGTACGATACCTGCTGGTGTACTCGGAGAAAAAGCACCGGAGGAGGCACGCCAGGCCGGTGTCGTGGCTGGCCAGACATCACTTCGCCATCATGATGAGTCTGTACCTTCTGCTGCTCATCGCCATCGGGGCCTTCAACTCCCCAGCATTCCAGGCCTTCCGCAACCGGTTGTTCGATGGGAGGAAGTGAGGCGCACCCTGTCTACATCATCACCATCTGCCTCGTGCCTTAGCCGCAGCCACAAAGTCCTGTCGGCTGCTTTTGTATCGCAGTGCGCTTCGCTTTCTGTTCTGTTCCCAATGTGCGCTCCCCCGCTGTGGTTGTAAGGAGCAAATGACTTGGAGGCCTCGACCACATGACAACCTTGACCCACCAGCTAATCGTTGAGTGCAAACTTGTGCCCCATATCGTGTCATGAGTGTGATGTCCAGGGTCCAGATTTGTACTTTACTAGTCACAGGGAGGTCACAGGCCCAGGGCTTTCTTATTTCATTGTTCCTTCAGGTGTTCAGAGTGGTGcaaattgtttctgtttgttctctTTTGTCGTGACTGTAATTCATGTCTGTgggatttcatttgtttttcctcagttCCAGTGCTGAAATGACCAACTTTTCAAAGAAACCCCCGGACATGTTTCCAAACTGAGATGTTGTTTTGTCGTTGTTGTTTATAGTTAATTAGCTGTAGGACTGGGCCTGGTGTACGGACACTTTAGATGGATAATTCATCTTCTGTTGTTTGTAGTTCTTATCTGGAGCTCTGTATAGTATGTCCCTGAGGATACCATGTCAAGGCCCATGAATGTATTTCACAGTGCTTAAATTCAGGGGTTAAAGTTATCTATCTTGTGTAAAggattttgtgtattttgtattgagcGATGTCTACTCGTACATGACACTGTCACTATTGTGTGTAGGTGGCTTTGGTCCCCTGTCCCCCTTACTGAAGAGGTAGGGGTCTACAAAAGCCATGCAGCACACAGCGCCTTAGCATTTCCTGTCTTCATAACCTCAGAGTCTTGCCTTCAGTTTCCTGGGAGGGGTAgagcagtggcagctctttatGCACCGGGACCACTGACTGCCGCCTGAATACCAGCTGCTTGTTTGCACCTTTTATTGTTCTATAAAATGCCCCTTCTGCGCCTCTCCTGGATCCAGCGCCTGTCCGGCTCCAGGGTGTGATGGCCGGGTAAGGGGCAGAGTGCGCTCCCTGCCCGTCGCATCTGACCGTGCTGAAGCCAAGGAGGAGAAATGGGCAGACTGGCACAAATGGAAGCTAAGTGCGGTAGTGTTTAGTGTTTAGGGGGATGTATATATctgaagagaaataaataattgcgttaatgttcttttactttttaaacaaaacaaaaaatgtattaagagtTATAAGATCTAACTAGGGCAGTATTTAGAGATTGTCCTTTAAAGatgcaatataatataatatttgcatttgcaaGTGTATCTAGTTTTGTAACACTATATTTTTTTGATTGAGAACGGATAGAAACAGCATTTCAGTGACCCAGCATTGCCACTAGGAGTCAGCTGTACTCCTTTTGTACTGGTGTATTACAGGACCTGTCAACCTTCAAtgctacaaatataaaaaagtaaatcgGATcattttgttactgtttttgAGTTTGTGTCTTTTAAATTATGTCCAGAAAGAAATTTGTTTGACCGTG
>TU29906
GCACGGTTTTTAGCTTCCCCCTGTTTACACTatgttaaaactattaaaatgtttaaaacagaggcttatttttatatgatcaatcgcatgaagaatcgtatattttaattatatttgtaatccctcattatCGCTATAACCCTAAAttaatggtaatccaaatatagacgctttaccgactgcagaaatacaaaccctaCAACCTCAAAAAACttagcgattaatacaactgatccattcattatggtgtcaaaggtgtttttaaattaatcccattcacaataaaagctgatgccctgcgatgttattgatgtgatttttattttgcacattgatgaAGCTGCAGGTACAGAGAAAACGCTAACCCTGAATTTGTGAAAACTGTTCAGTAAGTTATGGATGCCAGAGTGTTGTATCCGtatttatacacacatgtatgagttttgcttaagaaactgtCTGTGActgttatactgtatatttcatgatatagatGTGTAGCGGCTACacgggacagatttaaacccagcgcACTGTATTTCATAATGCAACGCAGTTCACTCTCCCACAGACAAATAATAATGGACAATATTtaggatacttaaattaagctatattgtcaatgttaatcggatcatgatacagggagaagcaACATGGTTATTTACGAtgcgctggtaaacaaaataaactaaattaaattttaagtgatgtaatttgttttatatattgtttcaatgtctcccggtttctacttttgaatatcttgtataacttatactataaTACTGTGTTAAATAtcatacaaacatttcagcccaaagtttactgcactttaatgttagcggtatttcagcctccagtttaaaaaactaaatcccagaatgccgagTGTCCCAGATGCGGTATGACCTTTCGTGCCTCAGTctcttcctagggcagctggaCCCACGACAATGAGTGGAAACGCTGCGGGTCAGTGTAGGTGCACAGATACAACATGGCCACACTGAGGTGCAGCTGAACGTGGCCACTGGAAACTGGGTATTATTTACAGTTATAGCTGTTATAGAGCAGTAGATCGCGCTTGGCTGCAGTATTGTGTTTCTATAATGCCTCTAAACAAGATATTTACTAATACCAGGATTACCTAATGTCTCCAATTAGCCGGTTACAGGAGGAACAGTCCCCTGCTCCTTTCTGTCCTTTCTTTTTCACACGTGCAGTTATTGAGAGCAATTCAAGCCCAGGAAGGTGTTGCGTCAAGTTATGCACGTATTCCCAAGTTATTTACTCGTTTGCATGCATCGCTTAGACTGGGCCGGAGCCGAACTTGTGCAGAATATACGGAGCGAGTGGATGTATGAATGTGAGTAATGGTGACCTTTGGTGACCTTTGCAGACCTCACTGTTTGGTGAAGGCACTTACCTCACCAGTGACCTCAGCTTGGCTCTCCTCTACAGTCCCCATGGCAGCGGGTGGCGCGAGTCTCTGCTGGGGCCGTTGCTAAGCTGCGTGGCCGTGTGCGAGATTGTGGACCACCCTGACGTCAAGTGTCAGGTGAAGAAGAGAGACTCCGAGAGCATCGACAGGCACAGGGCGCGGGTGAGGAACAGCGAGGGTGGTGACGTGCCCCAGAAGTACTTTGTGGTGACCAACAACCAGCTGTTGCGAGTACGATACCTGCTGGTGTACTCGGAGAAAAAGCACCGGAGGAGGCACGCCAGGCCGGTGTCGTGGCTGGCCAGACATCACTTCGCCATCATGATGAGTCTGTACCTTCTGCTGCTCATCGCCATCGGGGCCTTCAACTCCCCAGCATTCCAGGCCTTCCGCAACCGGTTGTTCGATGGGAGGAAGTGAGGCGCACCCTGTCTACATCATCACCATCTGCCTCGTGCCTTAGCCGCAGCCACAAAGTCCTGTCGGCTGCTTTTGTATCGCAGTGCGCTTCGCTTTCTGTTCTGTTCCCAATGTGCGCTCCCCCGCTGTGGTTGTAAGGAGCAAATGACTTGGAGGCCTCGACCACATGACAACCTTGACCCACCAGCTAATCGTTGAGTGCAAACTTGTGCCCCATATCGTGTCATGAGTGTGATGTCCAGGGTCCAGATTTGTACTTTACTAGTCACAGGGAGGTCACAGGCCCAGGGCTTTCTTATTTCATTGTTCCTTCAGGTGTTCAGAGTGGTGcaaattgtttctgtttgttctctTTTGTCGTGACTGTAATTCATGTCTGTgggatttcatttgtttttcctcagttCCAGTGCTGAAATGACCAACTTTTCAAAGAAACCCCCGGACATGTTTCCAAACTGAGATGTTGTTTTGTCGTTGTTGTTTATAGTTAATTAGCTGTAGGACTGGGCCTGGTGTACGGACACTTTAGATGGATAATTCATCTTCTGTTGTTTGTAGTTCTTATCTGGAGCTCTGTATAGTATGTCCCTGAGGATACCATGTCAAGGCCCATGAATGTATTTCACAGTGCTTAAATTCAGGGGTTAAAGTTATCTATCTTGTGTAAAggattttgtgtattttgtattgagcGATGTCTACTCGTACATGACACTGTCACTATTGTGTGTAGGTGGCTTTGGTCCCCTGTCCCCCTTACTGAAGAGGTAGGGGTCTACAAAAGCCATGCAGCACACAGCGCCTTAGCATTTCCTGTCTTCATAACCTCAGAGTCTTGCCTTCAGTTTCCTGGGAGGGGTAgagcagtggcagctctttatGCACCGGGACCACTGACTGCCGCCTGAATACCAGCTGCTTGTTTGCACCTTTTATTGTTCTATAAAATGCCCCTTCTGCGCCTCTCCTGGATCCAGCGCCTGTCCGGCTCCAGGGTGTGATGGCCGGGTAAGGGGCAGAGTGCGCTCCCTGCCCGTCGCATCTGACCGTGCTGAAGCCAAGGAGGAGAAATGGGCAGACTGGCACAAATGGAAGCTAAGTGCGGTAGTGTTTAGTGTTTAGGGGGATGTATATATctgaagagaaataaataattgcgttaatgttcttttactttttaaacaaaacaaaaaatgtattaagagtTATAAGATCTAACTAGGGCAGTATTTAGAGATTGTCCTTTAAAGatgcaatataatataatatttgcatttgcaaGTGTATCTAGTTTTGTAACACTATATTTTTTTGATTGAGAACGGATAGAAACAGCATTTCAGTGACCCAGCATTGCCACTAGGAGTCAGCTGTACTCCTTTTGTACTGGTGTATTACAGGACCTGTCAACCTTCAAtgctacaaatataaaaaagtaaatcgGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007452 False 2653 mRNA 0.51 7 19007550 19014899
TU29906 True 3312 lncRNA 0.44 3 19010714 19014831

Neighbor

gene id symbol gene type direction distance location
AMCG00007451 LOC107755062,LOC107700450 coding upstream 35346 18939265 ~ 18972204 (+)
AMCG00007450 NA coding upstream 110921 18875555 ~ 18896629 (+)
AMCG00007447 vwa9,LOC107583765 coding upstream 192622 18810855 ~ 18814928 (+)
AMCG00007446 LOC101468289,LOC102208128,LOC106924056 coding upstream 217462 18750470 ~ 18790088 (+)
AMCG00007444 NA coding upstream 295304 18690011 ~ 18712246 (+)
AMCG00007453 NA coding downstream 17185 19032084 ~ 19047759 (+)
AMCG00007458 LOC107712499,LOC106561775 coding downstream 128234 19143133 ~ 19167032 (+)
AMCG00007464 NA coding downstream 164896 19179795 ~ 19182234 (+)
AMCG00007466 NA coding downstream 175847 19190746 ~ 19194345 (+)
AMCG00007465 NA coding downstream 203891 19218790 ~ 19236741 (+)
G23804 NA non-coding upstream 287756 18714671 ~ 18719794 (+)
G23791 NA non-coding upstream 382491 18623921 ~ 18625059 (+)
G23782 NA non-coding upstream 418482 18588866 ~ 18589068 (+)
G23781 NA non-coding upstream 418860 18588016 ~ 18588690 (+)
G23780 NA non-coding upstream 421014 18586174 ~ 18586536 (+)
G23891 casc4 non-coding downstream 33187 19048086 ~ 19112325 (+)
G23886 NA non-coding downstream 65183 19080082 ~ 19083613 (+)
G24030 NA non-coding downstream 614405 19629304 ~ 19630607 (+)
G24040 NA non-coding downstream 635757 19650656 ~ 19650874 (+)
G24083 NA non-coding downstream 784586 19799485 ~ 19799952 (+)
AMCG00007433 NA other upstream 437078 18567242 ~ 18570472 (+)
G23724 NA other upstream 715212 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 782614 18217730 ~ 18224936 (+)
G23698 fem1b other upstream 799242 18207078 ~ 18208308 (+)
AMCG00007417 NA other upstream 805590 18198618 ~ 18201960 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other downstream 36078 19050977 ~ 19056133 (+)
AMCG00007483 NA other downstream 924271 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 2045260 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 3116674 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 3174346 22189245 ~ 22203951 (+)

Expression


Co-expression Network