AMCG00007453


Basic Information

Item Value
gene id AMCG00007453
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19032084 ~ 19047759 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007453
GCAGCGCCATACTTTTACAGCTTTGGCATGGAGGCCAACAGTGAGGCTATTGAGAAGCGCTTAGAGCTGAAAATACCCCTGTTCAACTGCTTCCTGCCCAGCCGACCCCAGGGCTCCCGAGCGCACTATATAAAGAGCAGAGAGTCAGGAGCCAGGCAACTCTGCTGCACAGCGCTCAGAGGACAGCACTACGCACTACACACTGACCACGGATCACGGAGCACATACATACTCAGGAGTCCGGAGTCAGAGCCAGAGCCGGACCCGGGAGACGAGGAGAGTGCGAGCCGGGCTGCACAGCAAAACGAGTGGAGTACCTGGTTCAACGTGGATCACCCTGGGGGTCAGGGTGACTATGAGCAGCTGGATGCCATTCGCTTCTACTATCATGAGCGCGTGTGCGACTCCCCCCGAGCCCTGGAGGCGCGCACCACAGACTGGACCCCGGCCCACAGCACGGGCGAGACAGTGCACTTGGACCCCCGCCGTGGGTTCTGGTGTGTGAATGCAGAGCAGCCCGAAGGGAGGAACTGCTCCAACTACGCAGTCCGGTTCCTCTGCCCCAAAGAGCTGtcccacaaaaaacacaaacacaaaccaacaacaGCCACATTAACCTACAGCTGTTTCCTCCTATCAGCCCCTGGGGCCGCAGCGGAGGGAGTGTGGGGACCATGGTCGGAGTGGAGCCCATGTTCCGCCCAgtgtgggggcactgctgtgcAGATGCGCTCCAGAAACTGCAATTCACACTCCcaccactgggagaaggagtGCATCGGACCCACTGTGGAAGGCAGAATGTGCAAAGGACCATCCTGCACAGtgtgtaaCCTGTCCTGCCCCATGGGCCATGTGAATGCGGAGTGCGAAGCCTGCATGTGTGAGGAGCACCTCCTGCTGGGCACGGTTCGCACTGCGGCTGGTCTGCCTGTCCCTGGGGCCGCACTGCTCAGGGTGGGCAAAACGGCCAAGCTTCTCACCCTGACAGACCACAACGGCCACTTCAGCATCCCAGGGGTCTGTCCCGACGGCAACACCACCCTGAGGGTCAAGCTGGAGAAATACGCCCCTGAGACAGTCACGGTGCCCTCCAGTAATGACAAGGTCTCCGTCATTCATGTCAAGCTGCAGAGGGCAGAGAAGCCCCATGTGCTGAAGAACCCGGAGAGCAAGGCGCGGCGCGAGGGCCAGACAGCCGCCTTCTGCTGCAAGGTGGGGGGACAGCCGGAGCCGGACAACTACCTGTGGTATCATAATGGCACCCTGCTGGACAGAAAGCAGTTCCAGTATGACAGCACCCTGGTACtgaagaaactgaagaaaagcCAGGCGGGCGAGTACCACTGTAAGGCAAGCAACGAAGCTGGGACCATCAAATCCCAGTCTGCTACCCTCACTGTCATTGGGCCTGAGGAGCCTTCCTGTAAACCTGAGCCTGAGTCCCACCTAATCCGCCTGCCTCACGACTGCTACCAAAACTCTAGCAACTCCTTCTTCTACGATGTTGGGAAGTGCCCCACAGGAACATGCACCGGACAGCTGGACAATGGGATCAGGTGCAAGGACACTGTGTCGTACTGCTGTGGGGTGGAGAAGATGGAGCAGAAGCAGATAACCTGCAAGGGCTACACACTGCCCACCATGGTGGTCACCGAGTGTGGCTGCCAGAAGTGCGTCGACACGAAGGTGATCGTGCGCGGGAGGGCAGTGGCAGCAGACAACGGTGAGCCTCTGCGCTTCGGACATGTCTTCATGGGAGGCGTCAGGGTCAGCCGGACAGGCTACAAGGGCACCTTCTCCATCCAGGTACCCTTCGACACAGAGAGGCTGGTCCTCACCTTTGTTGACCACATGAAGAAATTTGTGAACACCACCAAAGTGCTGCCCTTCAACAAGAAAGGTGGGGCAGTGTACCATGAGGTCAAATTGCTGCGGAGGAAAGCGCCAGTGACTCTGCTCTCCTCTGAGACAAACATGATCTCACTGGGGGAGAAAGAAGGGCAGGACCCCATTGCTGAGCTCCAGATCCCACCTAATGCCTTTTACAGAGAAAATGGGGAGGTTTATGTGGGAAAAGTCAAAGCCAGCGTGACATTCCTGGATCCCAGAGACATATCCACAGCAACAGCTGCTCAGAGCGACCTCAACTTTGTGGGCGAGGAAGGGGACGTGCTGCCTCTAGTGACCTACGGCATGTTCTCAGTGGACTTCACGGATGAGGCCATGACAGAGTCCCTAAATGCCGGCAAGGTGAAGGTGTTTCTGGACTCGGCTCAGGTACGTATGCCGGAGCACCTTAGTGGGATGAAGCTGTGGTCCCTCAACCCAGAGACAGGCTTctgggaggaagagggagactTCCACCTGGAGAAGACCAGGCGCGGGAAACGGGAGGAAAGATCCTTCCTGATCGGTAACATGGAAATCAAGGAACGCCGACTGTTTAACCTGGATGTGCCAGAGAACAGGAGGTGCTACGTCAAAGTCAGAGCCTTCCGCAGCGAGAGGTTCATGCCGAGCGAGCAAGTGGAAGGGGTGGTGATCACCCTGATCAACATGGAGCCTACCCCAGGTTTTTCCTCCAACCCCAGGGCCTGGGGGCGCTTCGACAGTGTCATAACCGGCTCAAATGGGGCCTGCTTGCCGGCTTTCTGTGATGACCAGAAGACGGATGCTTATACTGCCTACGTGATGGCCAACATCGGTGGTGAGGAGTTGGAAGCAGTCTCGTCATCACCAAAATTCAACCCCAACGCTATTGGAGTCCCCCAGCCCTACCTGAACAAGCTGGGCTACAGGAGAACAGACCATGAAGACcccaaaatgaaaaagacagcCTTCAAGATGAACGTGGCAAAGCCCAGCCCCAACGCCGCAGAGGAGAGCAACGGCCCCGTCTACTCGTTCGAGAACCTGAAGGAATGCGAGGAGGCCCCATTTACAGCAGGCCACTTCAGGTTCTACCGGGTGGAGGGAGACCACTATGACTACAACACGGTCCACTTCAATGAGGATGATCCCATGAGCTGGACTGCGGACTATCTGAGTTGGTGGCCCAAGCCCATGGAGTACAGGGCGTGCTACATCAAGGTGAAGATAAACGGCCCCAAGGAGATCATGGTGCGCTCCCGGAACATGGGAGGCACCCACCCACAGACGGTCGGGAAGCTGTACGGAATCCGGGACGCGCGTAGCACCCGAGACATGGACCAGTCCAACTTGTCAGCTGTCTGCCTGGAGTTCAAGTGCAGCGGAATGCTTTACGACCAGGATCGTGTGGATCGAACCCTGGTCAAGATCATCCCCCAGGGAAGCTGCAAGCGAGACAGCGTGGACAGCATGCTGCAGGAGTACCTGGTGAACCACCTCCCGCTGGCGGTCAACAATGACACCAACGAGTTCACCATGCTGGCCCCCCTGGACCCCCTGGGCCACAACTACGGCATCTACACCGTGACCGACCAGGACCCCAGGACGGCGAAGGAGATCGCTCTGGGTCGTTGTTTCGACGGGACCTCCGATGGCACCTCCAGGGTCATGAAGAGTAACGTGGGGATGGCCCTTACTTTCACCTGCGGGGACAGGCAGGCAACGCGGCAGAGTGTGTTCCAGGCGCTGCAGAACTCACCCGGACAGACGCTGGTGAGCGCTGTGAGGGAAAGCAGGCGCagcaggagacagaggggcAGCAGGCGTCCTCGCATCGCTCAAGTCCCTCTCCGCAGGACCACAGCTGGCTAG

Function

GO: NA

KEGG:

id description
K24436 CILP; cartilage intermediate layer protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007453 True 3744 mRNA 0.58 9 19032084 19047759

Neighbor

gene id symbol gene type direction distance location
AMCG00007451 LOC107755062,LOC107700450 coding upstream 59880 18939265 ~ 18972204 (+)
AMCG00007450 NA coding upstream 135455 18875555 ~ 18896629 (+)
AMCG00007447 vwa9,LOC107583765 coding upstream 217156 18810855 ~ 18814928 (+)
AMCG00007446 LOC101468289,LOC102208128,LOC106924056 coding upstream 241996 18750470 ~ 18790088 (+)
AMCG00007444 NA coding upstream 319838 18690011 ~ 18712246 (+)
AMCG00007458 LOC107712499,LOC106561775 coding downstream 95374 19143133 ~ 19167032 (+)
AMCG00007464 NA coding downstream 132036 19179795 ~ 19182234 (+)
AMCG00007466 NA coding downstream 142987 19190746 ~ 19194345 (+)
AMCG00007465 NA coding downstream 171031 19218790 ~ 19236741 (+)
AMCG00007467 NA coding downstream 255350 19303109 ~ 19338989 (+)
G23804 NA non-coding upstream 312290 18714671 ~ 18719794 (+)
G23791 NA non-coding upstream 407025 18623921 ~ 18625059 (+)
G23782 NA non-coding upstream 443016 18588866 ~ 18589068 (+)
G23781 NA non-coding upstream 443394 18588016 ~ 18588690 (+)
G23780 NA non-coding upstream 445548 18586174 ~ 18586536 (+)
G23891 casc4 non-coding downstream 327 19048086 ~ 19112325 (+)
G23886 NA non-coding downstream 32323 19080082 ~ 19083613 (+)
G24030 NA non-coding downstream 581545 19629304 ~ 19630607 (+)
G24040 NA non-coding downstream 602897 19650656 ~ 19650874 (+)
G24083 NA non-coding downstream 751726 19799485 ~ 19799952 (+)
AMCG00007452 NA other upstream 17185 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 461612 18567242 ~ 18570472 (+)
G23724 NA other upstream 739746 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 807148 18217730 ~ 18224936 (+)
G23698 fem1b other upstream 823776 18207078 ~ 18208308 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other downstream 3218 19050977 ~ 19056133 (+)
AMCG00007483 NA other downstream 891411 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 2012400 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 3083814 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 3141486 22189245 ~ 22203951 (+)

Expression


Co-expression Network