AMCG00007468 (LOC107595092)


Basic Information

Item Value
gene id AMCG00007468
gene name LOC107595092
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19463556 ~ 19479089 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007468
ATGGCTGCTAACTCTGTGATCTCACTTGTCTCCCAGGAGCTGCTGTTCAGTGTCTGTGCCCTAAATGTCATCTCCACGATCGTGTGTGCCCTGGCCACCGCTATGTGCTGCATGCAGATGGTCTCCACTGATGTCCTGCAGATGtttattCCTCATAGATCACGGTCTATGAACCCAGACTGTATGTCTCCGCACGGCACCATCCTGCACCAGACTCTGGATTTCGATGAGTTCATTCCTCCGATCCCTCCCCCGCCCTACTACCCTCCCGAGTACACCTGCACCCCTGTCCTGGAGGCACAGAGAGGCCTGCACCTGGACTTCCCTCACTCCCCATTCACAGCCATCTATGGAGTGCCTATCAACAGTCCTGGGACGCTGTACCCCTCAGAGCTGCCGCCCCCATACGAGGCCGTGGTGAGTCAGACGCCAGCCAGCCAGGTGAGGACCCCTGAGATGCCCCTTACTGTCACCAACAGTCTGGAGCAGCAGGGCACCGAATCCAGCCTCGCTTCCCTGATGGTGTCGGAGGTAGCTGACATGCCGGACCACAGCTGCTCCTCGGAGGACCTGTGCTCGCTGGAGGTGCAGGGCTCCCTGCGCTCCGCCGACTTCTCCCCCTACAGCACCATACGCACGGCTGCCACAGACGGCAGCTGCACCAGCCTGGAGCACAGCGCCCGTTGCGGACTGCGCCCTGGCCACTCTCACCACCACTCCCAGGGCTCCCCTGCTGGcgatggggaggaggaggaggcaggcTTCAGCGAGTCCTCTCTGGACCGCTCCCACACTCAGGGGTCCAACAACTGCACCCAGGACCACTCCCCTGACTGGTCCTCTGAGAACAACAGCACGCTGGAGAGGGAGGGTCACATGatgccccccaccaccacagaGAGGGCAGCCACCTCCACCGCCACTGCCGCCGCCTCCACCTGCGCCCCATcgccctcccccccaccccggcaGAAGAAGCTGTGCTTCAGCGTGTGGtccccctcttcttcctcctccttctctcagCCCCAGTCCAGCTCAGCCCTCAGCAGCACCTCACACTCCGGCAGCCAGGACCGGCCGCGGCGGCACCGGCGCTACAGGCTGTCCAGGATTGTCCGCTCCACCAGCGACCCTATCTCCTGCACGTCCATGTCTGGAAGCGACAGCTGTGGCGGCTCAGCTGCTTGTAATCAGGTTAATGATGACTCCCCCCAGACCTCACCTGAGCCAGTCTCCTGCCCGGTGGTGGTGTCGTACCAGGCTCCGGCCAGACGCACGCCATTCTCCCGGAAGCAGCAGAGGGTAGACATCAGGCTGAAGCCCAGGGCTGTGCAGGCCATCACCAAGGAGAGGCCCCGCTCCCTGGTGGACCTCAAGACATACAAGGACACCAAGATCCTGGTGGCCAAATTCCTGGAGCATTCCAGCTGCAACTTGCCCCCAGAGGTGCAGCACGTGGTCAACAGCATCAAGCACGTCATCAAGAGCGATGAGCGGCACATGGAGGAGGCCATCTTCAGTGCCAGCGTCATCGACCAGGTTATGACGAGCTCCCAGCATTCAGTGCATGGCCCCAGGAAGCGCCCCCAGGACGACCTGCACCTGCAGAGCTGTGGGGCGCTGAGctcgccctcctcctccctccggCGTGCACGGACAAACCACGCATCCCACCCTGACCGCCCACACAGCCTGATCGGAGTGTGCCGAGAGACCATCCTCTGA

Function

NR:

description
PREDICTED: protein FAM189A1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007468 True 1728 mRNA 0.63 8 19463556 19479089

Neighbor

gene id symbol gene type direction distance location
AMCG00007469 fam189a1 coding upstream 12087 19442457 ~ 19451469 (+)
AMCG00007467 NA coding upstream 124567 19303109 ~ 19338989 (+)
AMCG00007465 NA coding upstream 226815 19218790 ~ 19236741 (+)
AMCG00007466 NA coding upstream 269211 19190746 ~ 19194345 (+)
AMCG00007464 NA coding upstream 281322 19179795 ~ 19182234 (+)
AMCG00007472 mcee coding downstream 101325 19580414 ~ 19590900 (+)
AMCG00007473 NA coding downstream 113332 19592421 ~ 19602959 (+)
AMCG00007476 myo1e,LOC102792200,LOC103362848 coding downstream 187712 19666801 ~ 19714103 (+)
AMCG00007478 sltm,LOC106587340 coding downstream 301488 19780577 ~ 19792758 (+)
AMCG00007482 adam10,LOC101172489,LOC108428395,LOC106587342,LOC107704208 coding downstream 401979 19881068 ~ 19910112 (+)
G23891 casc4 non-coding upstream 351231 19048086 ~ 19112325 (+)
G23887 NA non-coding upstream 376084 19004347 ~ 19087472 (+)
G23886 NA non-coding upstream 379943 19080082 ~ 19083613 (+)
G23804 NA non-coding upstream 743762 18714671 ~ 18719794 (+)
G23791 NA non-coding upstream 838497 18623921 ~ 18625059 (+)
G24030 NA non-coding downstream 150215 19629304 ~ 19630607 (+)
G24040 NA non-coding downstream 171567 19650656 ~ 19650874 (+)
G24083 NA non-coding downstream 320396 19799485 ~ 19799952 (+)
G24085 NA non-coding downstream 323764 19802853 ~ 19803466 (+)
G24088 NA non-coding downstream 336706 19815795 ~ 19818345 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 407423 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 448657 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 893084 18567242 ~ 18570472 (+)
G23724 NA other upstream 1171218 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 1238620 18217730 ~ 18224936 (+)
AMCG00007483 NA other downstream 460081 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 1581070 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 2652484 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 2710156 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 2784431 22263520 ~ 22266409 (+)

Expression


Co-expression Network