AMCG00007472 (mcee)


Basic Information

Item Value
gene id AMCG00007472
gene name mcee
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19580414 ~ 19590900 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007472
ttaaaaaaaaaaaagtttatttagaagaagaaaatactGAATATCGAATCACACTGGGACCACACTAAAAGGGGTTGAACAGATATGGTTACTGACACTCTCAAGATACAGTGGCTTAATCCTCCTTTTGCTTAAAAATGCAACACTTTGAATTTcagctgagggaaaaaaaaaagcacttgaGGAGTGAAATTGTATGCTGGCTGGATGTGGAAACCATCcaagctgttttaaaatgacagctTTGCTTGCCAGACTTGCCAGGTTTTGAGTCCAACTTATTTAAATTTTAGCTGCACCACAAGAATGTTAACCTTAATGGTTTATGTGTCACTGCAGtgttaaacaaattacaaaaataatttgctctGAAGGTAGGTTATATTTACACAGAATTTAATATTAACAGCActatgattaaataattaaataaatacaacatgtaATTTTGACTTAAAGATGCTTGCAAAGAAACTACCGATtgctaaatgtttaaattaaacactacatttccaccaaaaaatgtatgaaaacaaaactcatccactttactttttaaaattagaaaatacaattcaaattttaatttgatcaattaaaaaaggCTGCTCCATAAAACAAGGttataaagtaaaattaatagATTCCAGGAatttcaatcatttattttttaacagtttccAAATCCACTTTCAATCTCTAATGAAATAGCAGCAAATTGGACACATTCTGCTTGAAGCAATGACTTGAATCTTTAATTGGCCATTACAACCTGAGGTGAAAATTATACAGAATTCAGCTGGatgtagaaaatgaaaatgcagtcTGCCAATTTACATCTCAAGTATCATCTGGAAAATTAACAATGTCACAAATATACAGAcaacttcaaataaaataaaaaacaactctgGCCTTAAAGACCAACTGCACGAGGgaaaacagtacagtaacaaGTCCTCAAAGTGTTAAGGCATGTTTGAATGGAAGGGGTACCAAAGAAATGCTAAGAAAAGAGAAcagcaacaaataaaacagagaagaaTTCAAACTAACAAACGTATCCCTCGCTCCTACACATCTTCTGCATTAGTGTTACACTCAGGGTCACAATGAAGGCATCCTGGAATATTGATTTAATGGACTTCACTCCACTGCAAGGTCTTCAGAAATTCTTTGGGAAGTCTGTTCTTCCTTTAAGTTCTACCTTCCATTTCGGAGCTCCTGCTCGGTCCCCAGTAGGCTGTACGAGGTCAGGCCTCTTCCAGCTCCACGAGCACCCCATCACAGTCTTTAGGGTGGAGAAACATGACAGGTTTACCGTGCGCTCCGATGCGGGGCTCCTCCGACAGAGTCCGAATcttcttagcctttaaatcacgtaTAGCTGAGTTGATATCATCCACCTCGATACAAATGTGATGCATCCCGCCGGATTTGTTCTTCTGCAGGAATCCCGCGATGGGGCTTTTCTCTCCCAGCGGGTGCAGGAGCTCTAGCTTGGTGTTGCCCAGTTCCACAAACACGGTGTAGACCCCGTGCTCCGGCAGTGGCACCCTGGCGCTCACCTGTGCGCCTAGCACGTCCCGGTACAGAGCGGTGGCTCTCTCCAGGTCTGGAACCGCGACGGCAACGTGATTGAGCCTTCCGAGCTTCCATACGGGACTCGGCCCACCTTGACGCACAGACCTGGACACTGCAAACGTCCTGCGTAGTGGGGCCGCACAACgaaaaataaatagtacgACTCACCCGCAACCTTCAACATGGAGGCCGCCATTTTGGTTTTCAACacaactttatttaaattatagggATAACTAACTCTCTCCAACAGCAGCCGAAACCcggtttaaaatacaaaactaacaaacaagaAGTGAACGTTTTCTTGAAGCACGATGATCTGTGACCAAAAACgatttgtttgtgttatatACTGTTAACGTAATctcacaaaatatgttttataaaacactaTTCAGTTATGTCCAGatgttgcaaaaatatatattttcatagaGCTAtgcttaaattatatatacatatacaaatatctaTTTGATGTATGAATGGGGACAGCAGTCTaggtacatttgttttccagcgCCCCGGAACTCGTGTTGTGCGTCTCGGGTTGCAGTCGACCCCTCAGCCGGCGGACAGCGGGTCCCCGGGACAAGCTTCCGTGCGAGACCAAAGTTACCCATGTGAATGAAACGATGGCAGCGTTGGACCCGGGACCCACGTTGGAAAGcagtttaaaacttttaaacacCAACATTGCACACCCTGAACAGTTTTTAAGTCTCCAAGATGGCTTGGCTTCAGAGTTCACCCTCCTCACAAAGACACTGTATGATCTGCACAAAGCTCATGAGCCCTCCTGCGTGAAAGGTAGCCCCCTGAAAGAACTGGTGGTGGAGAACTTTGATGAAGAACAAATCTGGCAGGAGCTGGAACTGCAGAACAACGCAGTGCTCACACATTTTGAGAAAGCAGTGAGAAAAGCTGTCGAGGATGAGGAGATACAGTTCCCTGGGGTGGTGGAAGAAGAGCAGGAGGCAGAGGATATTGAGATAGGGGAGAAATCAGCAGATGAAGAGAACCAAGATCAAGAAGATGAAGATGGAAATCCAGATGacagtgaggaagaggaggaggaggagagcaaaCCGAGATCCAAGAAGGCTTCAGCTGTTTCCAAGGCTATCAAGGAGTTCAGTGATGAAGACTCGGATGTGGACTTTGACGTGGACACCCTGGAGAAGCAGAGCAGAGGGAAAGCACAGAGGCCTGCAAGGTCGGGGAGGGGCTCCTTGGTGGACGACAGGTTCTTCAAGCTGGCTGAAATGGAGGCGTTCCTGGAAGACATGGAGAAGACGGAGGAGCGAGGGGATGAAGGTGACAGCGAGATCGATTACTTTGAGGACATCCAGTCCGAGGatgaggagctgctgctggaggaggagagcgCCGTCAAGACAAAACTGAAGCCTCAGAGGAGTTCAAGAAACCTGAAGTACAAGGACTTCTTTGACCCAGTGGAGGGCAGTGCTGCCCAGAGGGATCAGACTGAAGAAGACGAGGATTTGGGGTCAGAGGCAGAGGAAGGCAGTGAGGGGGAAGAGGAGATGGAAGACGAGGAAGAcatggaggaagaggaGGACGAGATGGACGAGACTGCCGACAACGAGGAGAGCCAGCAAGCCAAGGAGGCCTTTAAGAGAGTGACCTTTAACCTTTCAGATGACAGCGATGGGGAAGATGTGGAAGACATCCTcggaggaaaaaaacagaccTCTGAGACGCCAGAGTCCAAGTCTGCCTTTGAGAAACGCCAGGAAAAGATGGCCATGAAGGTTCGGGAGCTGGAGAAGGCAGCTCTGGAGGAGAAACCGTGGCAGCTGATGGGAGAGGTGTCATCTCAGAAGCGCCCGGAGAACAGCCTGCTTGCGGAGGACCTGGCGTTCGATCAAGCCACCAGGCACGCCCCTGTGATCACTGAGGAAACCACCCTCCATCTGGATGACATCATCAAGCAAAGGATCAAGGACCAGgcATGGGACGATGTTGTTCGCAAAGAGAAGCCCAAGGAGAACACCTTTGAGTACAAGAAGAGGCTGACGCTGGATCACGAGAAGAGCAAGCTCAGCCTGGCCGAAGTGTATGAGCAGGAGTACCTGAAACAGACCCAGCAAaagaaagaggaggaagaaaaccCAGCCCACGTGGAAATCCAGAAGCTCATGGACTCCATTTTCCTGAAACTCGACGCTCTCTCTAATTTCCAGTTCACCCCCAAGCCGCCCGTGCCTGAAGTCAAGATTGTCTCTAATCTGCCATCCATCACGATGGAGGAGGTGGCACCAGTCAGTGTCAGCGATGCCACTTTGCTCGCTCCAGAGGAGATCAAGGCAAGCCttGAAAAGAACAAAGCCGGAGACATCCAGGGCGATTCCGAGAAGACGGCGACGGACAAGAAGCGCGAGAGACGGAAGAAGAAGCTGCAGAAGAAGTTCCGgctgaaggagaaggagaagcagCAGAAActgagggaggagatgaagagtGGGGAGAACAGGAAGCTGAGCAAGACGGaggctgcagagtcactgaagAAACTGACCAAGGGAGGGAAGGCCACAGTGCTCAAGGATGAGGGAAAGGACAAGGTACTGCGCTCCTCCCAGGCCTTCTTCTCCGAGCTGCAGGATCAGGTGAAGATGCAGATCAAAGGGGTGAAAAACCAGTCtgcgaagaagaagaagaaggaagtGTCAGCCAGCAAGTTAAAGCTGTAACATTGGTGGAAGGGgtggtcattttttttattttttttgtgtacagacttgatgcattgtttttttcttttataagtattatttacttaattccCCTTGCACATTATATGCAGTCACTTAAAATAAAGGACAAACTTTGGAACATC

Function

symbol description
mcee Predicted to enable methylmalonyl-CoA epimerase activity. Predicted to be involved in L-methylmalonyl-CoA metabolic process. Orthologous to human MCEE (methylmalonyl-CoA epimerase).

NR:

description
PREDICTED: methylmalonyl-CoA epimerase, mitochondrial

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007472 True 4450 mRNA 0.46 13 19580414 19590900

Neighbor

gene id symbol gene type direction distance location
AMCG00007468 LOC107595092 coding upstream 101325 19463556 ~ 19479089 (+)
AMCG00007469 fam189a1 coding upstream 128945 19442457 ~ 19451469 (+)
AMCG00007467 NA coding upstream 241425 19303109 ~ 19338989 (+)
AMCG00007465 NA coding upstream 343673 19218790 ~ 19236741 (+)
AMCG00007466 NA coding upstream 386069 19190746 ~ 19194345 (+)
AMCG00007473 NA coding downstream 1521 19592421 ~ 19602959 (+)
AMCG00007476 myo1e,LOC102792200,LOC103362848 coding downstream 75901 19666801 ~ 19714103 (+)
AMCG00007478 sltm,LOC106587340 coding downstream 189677 19780577 ~ 19792758 (+)
AMCG00007482 adam10,LOC101172489,LOC108428395,LOC106587342,LOC107704208 coding downstream 290168 19881068 ~ 19910112 (+)
AMCG00007488 aldh1a2 coding downstream 388040 19978940 ~ 19992609 (+)
G23891 casc4 non-coding upstream 468089 19048086 ~ 19112325 (+)
G23887 NA non-coding upstream 492942 19004347 ~ 19087472 (+)
G23886 NA non-coding upstream 496801 19080082 ~ 19083613 (+)
G23804 NA non-coding upstream 860620 18714671 ~ 18719794 (+)
G23791 NA non-coding upstream 955355 18623921 ~ 18625059 (+)
G24030 NA non-coding downstream 38404 19629304 ~ 19630607 (+)
G24040 NA non-coding downstream 59756 19650656 ~ 19650874 (+)
G24083 NA non-coding downstream 208585 19799485 ~ 19799952 (+)
G24085 NA non-coding downstream 211953 19802853 ~ 19803466 (+)
G24088 NA non-coding downstream 224895 19815795 ~ 19818345 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 524281 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 565515 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 1009942 18567242 ~ 18570472 (+)
G23724 NA other upstream 1288076 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 1355478 18217730 ~ 18224936 (+)
AMCG00007483 NA other downstream 348270 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 1469259 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 2540673 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 2598345 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 2672620 22263520 ~ 22266409 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G298585 mphosph10,LOC107750489,LOC107700437,LOC107670762,LOC107586030 unknown NW_019172829.1 APWO02000047.1 2111967 ~ 2119737 (-)