AMCG00007475


Basic Information

Item Value
gene id AMCG00007475
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19603095 ~ 19622942 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007475
ATGTGGAAGGGCGAAGCGATCGTGACAGCTGGAGCAGAGCTGGCTAAACTGCTTTCCCCATCACCGCTTCCCTCGGTGATCCAGCTGCTGAGGCACCTCATCCTGCAGTTTATGGAACACAGGAACACCAGTGGGGAGATCTGGAGCTGCGAAAGAGTGTTTCTGAGCTGTCGCTTGCAGAGGAAATTGATTTTTGTGTCAGCAGAGAATGTTGGGaatagcttttttgttttttatgagaaaaatttGTTGTTTATCGTTTCTGCCGCTGCTGTCATTTCAGGGGAGATCATGGTGAACGAGGTGAACTTCGTGAGGAAATGTGTCGCCACGGAGACCAGCCGGGATGACCTGTGGGGCCGGCTAGTGTGCACCAACTTCAAGATCTCCTTCATCACAGAAGACATGCTGCCCCTGCAGCAGAAATTCCAGTACAAGAACCGGCTTCTTGGAGACCACGATATCCCCTTGGCATGCATCGAGCAGGTGGTCACAGTAAATGATGCCAAGGGGAAGCAGAAGGTACTTGGTTCCAACCAGAAGCTCAAATTTAATCCCACCGAGCTGATAATCTACTGCAAGGACTTCCGCATCATCAGGTTCCGCTTCGACGAGGCTGGCCCGGAGAGTGCCAAGAAGTTCCTGCTgaCTGACAAGGTGAACGGCCTGGATCCCCGGGGAGAGGGGGGCGGTGTTGGCGTGGCGGTAGCCAGCCTGCAGACAGCGCTGTTTGACCGGCCCTCCGACTGGGATCGAGAGGTGAAGCGCACTGGGGCGTCCGAGTGGAGAGTGTGCTCCGTCAACGAGGGCTACGCTGTCTCGGCCAGTCTTCCCGAGTACTTGGTGGTTCCCGCCTCCCTGGCAGATCAGGATCTGAAGCAGTTTTCCGGCTTCTTCTCTGAACAGCGCATTCCATTCTGGTGCTGGAACCATCACAATGGGAGTGCCTTGGTGAGGATGACCAGCATTAAAGATGTCGTCCAGCAAAGGAAGCTAGACCAAAGAATCTGCACCGCGATCACCAAGAGCCACCCCCAGCGCAGTGATGTGTTCAAGTCGGATTTAGACCGCGGCCTCCCCAACGTCCAGGACGTCCAGGTCGCGTTCGGCAAGCTGAGGCAGATCTGCATAATTGAGCCCTTTGAGGAGTCGGAGGAGAAGTGGCTGTCATCCATGGAGAGCTCGCGCTGGCTGGAGTATGTCAGGCTGTTCCTGAAGCATTCTGCCGAGCTTGTGTACGTGCTGGAGGGGAAGCATGCCTCTGTTGTCCTTCAAGAAGAGGGGGGACGGGACCTGAGCTGCGTGGTCTCGTCCCTGGTGCAGCTGATGCTCGACCCCCATTTCCGCAGCATTGCGGGCTTCCAGAGTCTGGTGCAGAAGGAGTGGGTGATGGCCGGCTTTCGCTTCCTGGACAGTGTGTGCATCTCCTTGCCTCTTCTACAGTCGCCCTTGTTCCTGCTGTTCCTGGACTGTGTCTGGCAGCTGCTCAACCAGTACCCAGCAGCCTTCGAGTTCACAGAGACCTACCTGACTGTGCTGAGCGACAGCATGTGGATCCCTGTGTTCAGCACCTTCCTGTTCAACTGCCCTCAGCAGCGTGCCGAGTACAGCCAGGACTTCGCCAGGACTAAGAACCTCCAGCTGGAAGACGACAAGGGTCTGCGGTTCCCCCCGGTGTGGGACTGGTCCCAGCAGTTCAGCGCCAAGGACCAGGCTCTGTTCAACAGCCCGTTGTATGTGGGGAAGAGTGTCAGCTGTGTGCAGAACGGAGCAGTGAAGACATTCAAGCGCACGAAGAAAAACTACAGCTCCACACTGCGTGGGATGCCATCTCTGCGGAACGGGCTGGTGGGTGATCAGGACACCCTTCCGCGACGCAACTCCCTGGTGCTGCGGCTGAAGCCCGACTTCTCCCAGCAGCGGGAGCCCCAGGACAGCCCAGCAGAGCAGTTCTTCCGGGAGTGGCTCTCCCGGCCCACCGACCTGCACGGCCCACTGCTGCCCCAGCTGCTGCCCTCGAACATCAAACTATGGAAGCTGAACTTCCTGCGCTGGGTCCCCGAGGCCCAGATCAACCGGGGTGGCTCCATCACGGCCTTCCACAAGGTGTCCCTGCTGGCGGACGAGATCGAGACTCTGCAGAACCGGCTGCGGCAGTATAAGGGCACCCCTGCGCCCGCCGCCAGCACCCCCCTGCGCCCCGAGCACAGCCGGATGTACTTCAAGGCTGGCAGCCTCAATGACTCTCCCTCCAGCCCCGACTACTTGACGTCGTCCTTCCCCTTCTCCCCCGTTGGAAACCTCTGCAGGCGCAGCATTCTGGGAACCCCTCTAAGCAAATTCCTGAGCGGTGCCAAAATCTGGCTCTCCACTGAAACGCTGGCCAATGAGACTCTCTGAGGGCCGTGCCAGTCTGCGGGGACAGGGCCACTTTACGCCTAGACTCCATTTCAGTAACAAGAAATcgacaaaagaaagaaagtactGACTGGGTAGTGACAGTGAAGGAGTTTATTTGTTcgggttttgtttttgcacaaaaGATAATTCAAAGTAATTCCAAAATAGCCTCAAATCGCACAATCTCTTCAGTAAGCTCCCCCCGGACCCATCTCTCTACGTGTTGCCAGTCATCCAGGCTGTTTATCAATAAAGGTgttttataaatcaaattaaagtaaaactaCACCTTTTTATTCCCCTCAAGGCAAAGGACCAACATTTAAGAGTTAAATTAAGAAGAGCTTTACTGGCTTGTCGAGACGTTGGGAGAGGCGACTGACCTGTAGGTTGGCAGacaatttattttggaaagaaaTGCTAAAAAGCCGAGACAACATCTCGAGGCGGACCTTCTGGGAAGGTATAAATAGACAATGAATTGCAGCCAATTCTCTTTAAAGAAACACTGCTGCGTAGAGACAATATTAGTTTGTATAATCCTAGAGTTAAAGAAGAAGTTCACATTATGGAATTGTGATTCTAGTTTaagtaattttctttattttttttacctttcaCTTCTGTTCCTAATGGCCCAACCAAAGGGACCGTCTACTAATTTACAGGGATACTGGTAAAGACTGGTCACATGACCTTTGTTACATAGCAGGAATAGTGTGGGCAGGCTGGGCACCCCTCTGTGGGCCTGTAGCAGCTGCACACACTGTCCCTCCACAGTGAGGGATTCTTGTGCCTGTGTAGTACAGGCTCCTGTTGCAGAGGTCCAGACTCGAGAGGTTAGGGGGCTTCAGGACTGCTGTGCGGTGCCTGGGCCAGTCCTTGCCTGGAGCACGGCGGGTGCTGGTGGTTTCTCAGTGTTCCATTCCATTGTACATACAAGGGGGATTGTGGGTAATTCCAGTCCAATCAAGACCTTGAAAGAAGCAGGTGACTTGACTGCTTTTCCCAATTAGGCAATTCAGACCTCGGGCTGAATGAAACCCAGAAACCCCTCTGGCCCCTGAGGACTGGAATTGCCCCAGCTCAGGCCTATAGCGGTACGTCTTTTAGTTAATTTCCATCAAGCTTAAAATCCATTTCATACCAAAATGCCACAGTTTAGTCCACCTTTATTACATAAACTGACAAACAAAATTCCAGCTTTAAGACTTGTAGTTTAGGCAATCAGAAATGGTCATATTTATTAGCAGTGTTCCCCTGTGAGtttttgaaatagttttgtttGCTACTTTCTTTTTTGGTTGTAGTCATatgtaaaaagtaatgtaatttaGTAGGAGCTATGTTAGTTTTCCCACTAATCCTTACTGAAGATGCACTCTGCTGGTGTTGCATGACTATTGTGCACGGTGAGCGGCACAATTTGATTTCAAGACATcagcataaatatttatttaattatgcaatATGGTTACACCCGGGACTTTTGTAATCCACTGTGCCTTTGAAGGGGAAAATGGGCTCACTGTTTGAATTCAAAGGACctaatgtttttagttttttgttttgtgttgcgcTTTTGACCGGTTGAGTAGTTTGGGATAGATATGTACTGACACCATGCTGATTCCAAAGCTGTCTGTGCTGGAAGCCATGTGGAGCTGGTGATACATCAGTTCCcctttaatggaaaaaaaacaacaaaaaacaaggccTATTGTGTGGTCCGAACCTTGCGCTGTGCCAGAGCGCCAGAGCACCAGATGTAGCCTCCGAGTGTTCGGTCTTTGACCGTATTTAGTCTAATCTGGTGGCTTTCTGCTCAGCACAGACACCGTGCTGTTACTGCGGTTATCATTAAGCTGCTTTCGCCAGGGTCTGATGGGCAGTAACTGTCCAATATAGAAGCACTgaccagagctttttgtaatcAGAGATGTCATTTTATGAGGCCAAATACATCACTCAATATTTAATACTGcagattattgtaaataaaattgcttttaattaaa

Function

GO: NA

KEGG:

id description
K18085 MTMR10_11_12; myotubularin-related protein 10/11/12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007475 True 4418 mRNA 0.51 17 19603095 19622942

Neighbor

gene id symbol gene type direction distance location
AMCG00007471 mcee,LOC107750491,LOC107670763,LOC106587249 coding downstream 19868 19580418 ~ 19583227 (-)
AMCG00007470 apba2,LOC108228832,LOC102306122,LOC103462423,LOC106961236 coding downstream 90116 19482612 ~ 19512979 (-)
AMCG00007459 NA coding downstream 416003 19182599 ~ 19187092 (-)
AMCG00007460 sord coding downstream 424049 19168814 ~ 19179046 (-)
AMCG00007463 NA coding downstream 462643 19137840 ~ 19140452 (-)
AMCG00007474 NA coding upstream 21011 19643953 ~ 19652843 (-)
AMCG00007477 NA coding upstream 91251 19714193 ~ 19717796 (-)
AMCG00007479 NA coding upstream 101265 19724207 ~ 19751795 (-)
AMCG00007480 NA coding upstream 177432 19800374 ~ 19818066 (-)
AMCG00007485 NA coding upstream 302495 19925437 ~ 19929389 (-)
G24003 NA non-coding downstream 23111 19579781 ~ 19579984 (-)
G23982 NA non-coding downstream 122008 19480014 ~ 19481087 (-)
G23875 NA non-coding downstream 701498 18901365 ~ 18901597 (-)
G23867 NA non-coding downstream 735616 18866767 ~ 18867479 (-)
G23854 NA non-coding downstream 773008 18829865 ~ 18830087 (-)
G24102 NA non-coding upstream 244916 19867858 ~ 19912916 (-)
G24213 NA non-coding upstream 665581 20288523 ~ 20288842 (-)
G24216 NA non-coding upstream 707758 20330700 ~ 20330902 (-)
G24218 LOC100538179 non-coding upstream 712129 20335071 ~ 20337168 (-)
G24219 NA non-coding upstream 714359 20337301 ~ 20339909 (-)
G23838 NA other downstream 825457 18776360 ~ 18777638 (-)
AMCG00007418 fem1b other downstream 1395075 18202459 ~ 18208020 (-)
G23661 NA other downstream 1544146 18055470 ~ 18058949 (-)
AMCG00007375 NA other downstream 2981190 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 3257515 16320997 ~ 16345580 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 168759 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 292204 19915146 ~ 19923153 (-)
AMCG00007494 NA other upstream 548387 20171329 ~ 20222004 (-)
G24217 NA other upstream 708571 20331513 ~ 20331811 (-)
AMCG00007500 NA other upstream 839562 20462504 ~ 20472919 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_04852902_04868261 MTMR12 coding CI01000039 null 4852902 ~ 4868691 (+)