AMCG00007478 (sltm,LOC106587340)


Basic Information

Item Value
gene id AMCG00007478
gene name sltm,LOC106587340
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19780577 ~ 19792758 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007478
AAACAACAATAACGTAGTGCGTCATCACGCTGCACGTAATTATCGCATCCGGGACCTTTCGGAGTTTCCATAATACCTTTTTCTATTACTCGCCCAGTTCATTCAGCGTTGCAAAATGGCGTCGGCAGCCATCCTTACGGAGACCAAGAAGCTTACAGATTTGCGCGTTATAGATCTGAAAACCGAGTTGAAGCGGAGGAACCTGGATGTAACGGGGGTAAAAAACGTGCTGATCGCAAGATTGAAGCAGGCGATCGAAGAGGAAGGCGGAGATTCCGATAACATTGAGATTTCGCTGTCGTCGGACACACCCACCAGGAAAAATGCCAAATCAAAAGGAAAGAAACCAGATACAGACACGGACACAACACTGGAGGAAGAGTCTTATTCCAAGgAAGTGGAAGATGAAGATGTCGAAAAAGATGTAACAGATACTGATGACGGTACTCGTGAAAATTCTAAACCCCTCCCTTCTGAAGATAGCCTTGCAGAGGCTGTACAAGCAGCTGCGAATGACAGTCAAGCCGCTGCATCCACTCAGGAAGTGGAGGATGATAACATTTCCGTCACAATCCAGGCAGAAGATGCCATCACGTTGGATGTTGATGGCGATGACCTCCTGGAAACAGGTAAAAATGTGAAACTTCCAGATTCAGAGGCAAACAAGGGCTGTGACGAGCCAGAGGCCTCTGCCCAGATGAACCAGGAGGAAGACAAGAAAGACGAAGCGAAAGAGAGCCATAAAGATGGTAAGAAAGATGACGGAGTGAAGACTGATTCTGCGAAGAAGGAAAGCAGAGAGGCCTCGAAGAAAGCTGAATTTGGAGACAAAGACAAGGATTCTGGGAAGAAAGGCCCCTCATCTACTGGGGCATCAGGTCAAGCAAAGAGTTCTTCAAAGGACAAAGATGGAAAAACTGCTGCCAAGGATGAAAAAGGAGGCACGAGCAGTGGTGGCAGCAGTGGGAGCACTGGTAGCTCATCCCGCAACCTGTGGGTGAGCGGCCTGTCGTCGAACACAAAGGCGGCCGACCTGAAAAATCTGTTTGGGAAGTATGGGAAGGTCAAAAGTGATCCGTTCAAAAAGGAATTTTCTAAAAAGGAAGGTGAAGAGAAAATGTGTTCCAGCAAGACATCGGGAGAAAAGAGGACCATGACTGGGGTCAAAGCACCAAGCAAAACTCCAGTATCTtccaagaaagaagaaaagaaatctGAGAAACCATCTGATAAAGAGAGCAAGGAAGCATCCAAGAAACAAGAGTCTAAAAGTGTGAAGACAGACACCACCACATCGGGGTCCAGTCAAGATTCTTCCAAAAAGGACGACAAGAAGCATGGCCGCACCAAAAGCCCCGGCAAGATGGTGGTGATCGATCAAACGAAAACGGACCCCGGCTTCAGTAAAATGAGACCGCCGCTGAGACGAGGGAGGTTTGATAAGATGGAAATGTTAAGGAACAAAGGGAGGATCTTACCGAACAAAGGAGGGAAGAAAGACATCTTGCCCTTTGAGAAGATGAAGGAGCAGCGAATGCGGGAGAGGCTCGTCCGGTTGGAGCGTGTCCGGCGGGCGATTGAGCTGCGGAGACGGCGCGAGATTGCGGAGCGAGAACGAATCCACCTCCTCCGAGAGAGGGAGGAGCGGGAGCACTTGCAGCGGGAGCGAGAGCGGCTGGAGATTGAGAGGCAGAAGTTGGAGAGGGAACGGATGGAGAGAGAGCGGCTGGAGAGGGAGCGGATACGTATCGAGCAGGAACGGCGTAAGGAGGCAGAGTGTATTGTCCGCGAACGGGAAGAACTCCGACGCCAACAAGAGCAGCTTCGTTACGAGCAAGAGAAGAGGAACTCCCTGAAAAGGACTCGGGATGTAGACCACAGGAGAGATGACCCATACTGGAATGGAAACAAGAAACTCCAGACTGACTCCGATGGTCGCCTGAGTCATGGCTCAGACTGCAACCGACCTCCGAGCCGCTTCCATGAGTTCAGCcccagagagaggggcaggTTCCCTGAGGGCTCTTCAGCGCAGCCCTCCACTTTTGAAAGGCGCAATCGGTTTGACAGTGAGGCAGATGTGAAGAAGCCCCGCCCCCCTGCCCGCAGGGACAGTTCAGGCTTCGACAGGTATCCCAAGAACTACGACGGCGCTAGGAGGCCCGAGCAGCCGCGCGCAGAGATCCGAGACACGGACCGCAGAGAGATCAGGGACCGGGATGAGAGGAGGACGGTCACCATTCCAGAGGGGCCCACGGGCAGCCGGGGGATTCCTGACCGGGCCAGGATCGAGGAGCTGTCACACAGCCGCTCTGCCCGCCACTCTGGGCACGGGGGCTGGAAGGCGGAAGGAGGGCTGGCAGCCAGCAAAGCAGACATGCGAGGAGCAGTGCGGATGCGAGCGGAGAGGTCGGGCAGGGAGGGCCCTGGGTCCAGCCTGCGAGGGGCTCCCTCGGCCAGCCGCGGACGATCCAGCTTCAGCAGCAGGGAAGGGGGCCGAGCCATGATGATGGGGGAGCAGCATTTTAGCGAGGGGAGGCAAGTGGTGGTAGAGCGGCACAGCCGAGACCAGGGCCCGAGGAAAGACTGGCATGGCCCGGGCTCACCGAGCACTGGCTTCCCTGACACCCACAGACTGGGGCACAGCCGGAGCATCATGGCCCAGCACTCGAGCCATTCTTCACCAGGGATGAACCGAATAGTACAGATTACCAACAGTTCCCTCTCGGGAGGAAGTGGGACAGGATTCAAGCCTTTTAAAGGAGCTCCAAGAAGATTCTAACTTCTGTGCTCGTGACATCTGCCAGAGCAATGGGAAGTCTTCGTAAAACTTCCAAGATTAAACTTTCTTTACATCaatcttttttatattaagaattttatttttttgttggaaTTTTTGGGTAgattcccccccctccccccctccttgGCTGGATTTTCCTATGGCACAAAAGTGAAGTAGTGTTTACCAACAGTTTGATGTGATCAAAGTATGAACCCATGTTCATGCACATACATGTTATAACATCTGTTCAAATAATGTACAgctttagtttttatttgtaatgaagtTTCATATATATGGTTTCAAAGATTGCcttttgtcctttaaaaaaaaaaaaagtactctTGTACTGTAAAGTGGT

Function

symbol description
sltm Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within ribosome biogenesis. Predicted to be active in nucleus. Orthologous to human SLTM (SAFB like transcription modulator).

NR:

description
PREDICTED: SAFB-like transcription modulator isoform X1

GO: NA

KEGG:

id description
K25093 SLTM; SAFB-like transcription modulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007478 True 3149 mRNA 0.52 18 19780577 19792758

Neighbor

gene id symbol gene type direction distance location
AMCG00007476 myo1e,LOC102792200,LOC103362848 coding upstream 66474 19666801 ~ 19714103 (+)
AMCG00007473 NA coding upstream 177618 19592421 ~ 19602959 (+)
AMCG00007472 mcee coding upstream 189677 19580414 ~ 19590900 (+)
AMCG00007468 LOC107595092 coding upstream 301488 19463556 ~ 19479089 (+)
AMCG00007469 fam189a1 coding upstream 329108 19442457 ~ 19451469 (+)
AMCG00007482 adam10,LOC101172489,LOC108428395,LOC106587342,LOC107704208 coding downstream 88310 19881068 ~ 19910112 (+)
AMCG00007488 aldh1a2 coding downstream 186182 19978940 ~ 19992609 (+)
AMCG00007497 NA coding downstream 445081 20237839 ~ 20251499 (+)
AMCG00007495 NA coding downstream 475402 20268160 ~ 20275806 (+)
AMCG00007496 LOC100538179,LOC107571204,LOC107741823 coding downstream 532718 20325476 ~ 20335371 (+)
G24040 NA non-coding upstream 129703 19650656 ~ 19650874 (+)
G24030 NA non-coding upstream 149970 19629304 ~ 19630607 (+)
G23891 casc4 non-coding upstream 668252 19048086 ~ 19112325 (+)
G23887 NA non-coding upstream 693105 19004347 ~ 19087472 (+)
G24083 NA non-coding downstream 6727 19799485 ~ 19799952 (+)
G24085 NA non-coding downstream 10095 19802853 ~ 19803466 (+)
G24088 NA non-coding downstream 23037 19815795 ~ 19818345 (+)
G24156 NA non-coding downstream 269215 20061973 ~ 20091627 (+)
G24167 NA non-coding downstream 311962 20104720 ~ 20105070 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 724444 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 765678 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 1210105 18567242 ~ 18570472 (+)
G23724 NA other upstream 1488239 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 1555641 18217730 ~ 18224936 (+)
AMCG00007483 NA other downstream 146412 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 1267401 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 2338815 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 2396487 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 2470762 22263520 ~ 22266409 (+)

Expression


Co-expression Network