AMCG00007479


Basic Information

Item Value
gene id AMCG00007479
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19724207 ~ 19751795 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007479
GCCCTGGACGAGGATGTGGTTGTGATAGAGGCCACCCCCGGCCCTCCAGTCAATGCCAGCGAGGAGATCAATGTCACCTCAACTGACAGCGAGGTGGAGATCGTCACTGTGGGGGACAGCTGCAGGTCACGGTCAACGGGCAACCACCCCCGGGGTCACTGGGGCCCCCCCTGCAGCTCCCAGAGCCGTGGCCCAGAGCCCAGAGGCCGCCACCGCCTGTCCACCGTCATCCAGCCGCTCCGGCAAAGTGCCGCCGAGGTGGTGGACCTCACCATGGACGAGGATGATCTCACAGTAGTGCCAACAACATCTGACAGTGGACACCCCCAGCTTGTCAGCTCCTCTTCCAACAATGCCTCTACCTCAGAGCAGCCCCCCGACGCCGCGCCCGGCCCCTCCACCAGCGCCCTCGACTCCCTGCCCGAGCCTCTGCTGGGGGGGGTGGCAGTGCACAGCAGCACCGCGGGCCCAGCCATAGGGGACGATGCCAGAAGAGGCTCCTCGGGGCTGGCCGGTGAGACCGGAGGCACAGCCATGCCCAGGCTGCCTTCCTGCTGCCCGCAGCACTCCCCGTGTAGTGGACCCTCGCAGGGCCACCTCCCCCTGAGCCACGCCCACTCCAGCTGCCTGCAGGCACAGCCACCACCCCCCCCTCCGCCGTCTGCACAGCTTGGACACACGCACCACTtccagcaccaccaccaccatcatcaccaccacgcgcccccgcccccacccctgCAGCCCTTCCCCGAGCCCAGCTGCCCCCTGGAGAGGCCTACCGCTGTGCCCGCCCCCTGCGGCCCTGTAAATGCATCGGGCAGCCAGTACCATGACCAGCAGACCCTGCCTGTGGATCTGAGCAACAGTGGTGTGAGGAGTCACGGAGGCAGCAGCTTCCACGGCACCTCAGCCTTTGACCCCTGCTGTCCAGGCTCGTCATCTCGCCCAGCAGTGTATAGCTCCCAGGCGGCGGCCGGGCCCAGCCAGCCGGTCACCACGGACGGCTACGGCTCAGGAATGGTACCCCAGCctcagccccagccccagctcTCCTCCTGCAGGCATTACATGCACCCCTCGTATGGTCCCCTGGCTCGATCTCTGCACCACCAGTCGTCGTCCTCCTGCCCCCACTCACACAGCAACGGCCCGCCCCCTCCACAGCCACCCTCCCAGAGTGATTATGTCATCCCCCACCCTGTGCACCCCTTCCACCCACCGCTGCCCTCCCACGCCCCCAGCCACGCTGTGCCTCCAGCCCCTCCCCCATCCCTACCTTCCCACCACCTCCCCACACCCACTGCCCCGCTGCCCCAGCACCTGCCCACCGAGCACCAGTCCCTCTCCCACCACCACATGTCCACGCTGGCCCCCGCAGTTCAGAGACTCCACCCCCACGAGATGCTTCAGAGGATGGAGGTACAGCGACGGAGGATGCTGCAGCACCCCACACGAGCACATGAGCGCCCGCCTCCCCACCCTCACAGGATGCACCCGAATTATGGCCATGGGCACCACATCCACGTCCCGCAGACAATGTCCACACACCCCCGGCAGCCAGACCAGAGGGCAGCCTGGGAGCTGGGCATTGAGGCGGGAGTGACGGTTGCCCCGTACCCTCCAGGCCATCTGCACCCTCATCTGCCTCACTACCACCCTCCCCCCAGGCTGCACCACTTCCCCATTGTCCCCTTCATGCATCCTGGTATGTCCGAGGTCACCTACCCACACATTAGATATATCTCATCCCGGATGACCGGATTTGGACGGACCTATGAAGATCTTCTGCATTTAGAGGAGCGATTAGGAAACGTCAACCGTGGTGCCTCCCAGGGAACCATTGAGAGGTGTACTTACCCTCACAAGTACAAAAAGAGAAAGCTGCACGGTAAACATGATGATGACGAGGGAGCAGAAGAAGACACTGAAGAGAAATGCACCATCTGTCTTTCTATACTGGAGGAAGGGGAAGATGTCAGACGCCTTCCCTGTATGCACCTTTTCCACCAACTATGTGTCGACCAGTGGCTCACTACTAATAAGAAATGCCCGATCTGCAGAGTGGATATAGAGGCGCAGCTCTCTGCTGAAAGTTGA

Function

GO: NA

KEGG:

id description
K10635 RNF111; E3 ubiquitin-protein ligase Arkadia

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007479 True 2100 mRNA 0.64 12 19724207 19751795

Neighbor

gene id symbol gene type direction distance location
AMCG00007477 NA coding downstream 6411 19714193 ~ 19717796 (-)
AMCG00007474 NA coding downstream 71364 19643953 ~ 19652843 (-)
AMCG00007475 NA coding downstream 101265 19603095 ~ 19622942 (-)
AMCG00007471 mcee,LOC107750491,LOC107670763,LOC106587249 coding downstream 140980 19580418 ~ 19583227 (-)
AMCG00007470 apba2,LOC108228832,LOC102306122,LOC103462423,LOC106961236 coding downstream 211228 19482612 ~ 19512979 (-)
AMCG00007480 NA coding upstream 48579 19800374 ~ 19818066 (-)
AMCG00007485 NA coding upstream 173642 19925437 ~ 19929389 (-)
AMCG00007486 NA coding upstream 182341 19934136 ~ 19941835 (-)
AMCG00007484 NA coding upstream 192060 19943855 ~ 19957453 (-)
AMCG00007492 NA coding upstream 277337 20029132 ~ 20032795 (-)
G24003 NA non-coding downstream 144223 19579781 ~ 19579984 (-)
G23982 NA non-coding downstream 243120 19480014 ~ 19481087 (-)
G23875 NA non-coding downstream 822610 18901365 ~ 18901597 (-)
G23867 NA non-coding downstream 856728 18866767 ~ 18867479 (-)
G23854 NA non-coding downstream 894120 18829865 ~ 18830087 (-)
G24102 NA non-coding upstream 116063 19867858 ~ 19912916 (-)
G24213 NA non-coding upstream 536728 20288523 ~ 20288842 (-)
G24216 NA non-coding upstream 578905 20330700 ~ 20330902 (-)
G24218 LOC100538179 non-coding upstream 583276 20335071 ~ 20337168 (-)
G24219 NA non-coding upstream 585506 20337301 ~ 20339909 (-)
G23838 NA other downstream 946569 18776360 ~ 18777638 (-)
AMCG00007418 fem1b other downstream 1516187 18202459 ~ 18208020 (-)
G23661 NA other downstream 1665258 18055470 ~ 18058949 (-)
AMCG00007375 NA other downstream 3102302 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 3378627 16320997 ~ 16345580 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 39906 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 163351 19915146 ~ 19923153 (-)
AMCG00007494 NA other upstream 419534 20171329 ~ 20222004 (-)
G24217 NA other upstream 579718 20331513 ~ 20331811 (-)
AMCG00007500 NA other upstream 710709 20462504 ~ 20472919 (-)

Expression


Co-expression Network