AMCG00007480


Basic Information

Item Value
gene id AMCG00007480
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19800374 ~ 19818066 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007480
GTAAGCTTTAAATTTGTATCAGTGCTATTACTGTATAATTTATGTAGATTTGATTTCATATCCCTGGTCTGTGTAACACATTACAGCCAGGCAGCTAGCGCAGTGTGGAGTCATGGGCCGGGATTCTTCGGGGCGGTGTGTGGGTGGAAAGCTGTGGAGCCGGAGTAGAAAGGcgtgtagaaaaaaaaaaaagcaaaagcaatcaCTTTGGTcaacgtttttgttttgctttattttagtcTTCTTATAGTGTGTGAACAAAACCATCACActctcaaaataatgtattttatcagGTTGTTCAGGCTTAATAGGTCTGTAGTACAGAGCCTTATTTAGCATTGATGTCACAACCCCATAGAACATGAGCAAAACATCTCACTGCCTATCCATGAACACGTTGCATGcactacattttaatataaatcaaacaTGGGCGTGgtagttaaaaaaacatgcaatttgaCCATTATTTACAGTATACCATAACCTCCTAATCAATTTAAGatgatatatatttgtatttgaacaaaaaacaaaaataatcacaaacaaagaaaaataaatacataacgaTTCATCACTGAATGCTGTATAAACAACATTTGTCGTGCGAATGGGTGTATTGTTACGCCAGCATTTCTAAGTCACTGCGCCTTTAAGAACATTCGGCTGTCTTCTACGCAGGCGTCGTGTCAGAAGTAGCACTTCCTGTTGATAAAACATGGGCAACTAAGCTTTgatgttttctgtctttctttatacagtatttatggattttggtggggggaggggatcTGACTTCGTGGTCGTAATAAAACACTCTCACAGACAatcaaactgtttttgtttcgAAGGAAGATGTATTGTTATAATGCAACAATATCGTTGAATGTGTAAAAGCTTTTTGTTCCCAAAACTTTATaaagaataatgaaaataaatgattaagcTAATAGATTTGATTATTtacgtgtatttattaatatttaaaatgcaaataaacccCTTTATGAAGAGCCGCGTCAAATTGAGATCCACATTATATTACTATCGCCCTTCCGTGACCTGAAGAGAGGCGTCCCTCCAGCCGTGACGTCAGAGAGGTAGAGAGATGTCATGGCGTCTTTGGAGCAGGAGCTGGAGCTGCAAGCCTGATAAAGACTAGGCGTTAGTGGGAGCCGAAATGGAGAAAAATGCAAACCTCCATATGGATATCGGAGGAGGTGCTCCCTGTTCTGCCAAAACAAGGGAAATGGCCGATGATAAAGCGCCCAGTTGTCTGAAAAGCGGAGGCGAGAGCTGCAAGACcattactgctgctgctcctctcAGTACTTTAGGTTGTACTAGTAGTACTACAACAACAGACACTGCCAGTGTTGATCCCTCGGGTTATCAGAAATCTGACGATAGTCGGGAAAATTGCGGATCTCTGCCGGCTGGGAGCAGCCCGGTCCAGTCCAGCCTCGGGGAGGGGAGCACCGAGCAGCTCAGCAATGGGACGGGACACAGCCAGTGCTCGGGACCCAACGGCGGCGGTGATGGTGAGGTTAGTGGTACTACAACAAAGTTGGTCAACAACAAAGCGGGTGGACCTCCTTCTTCTGCAAAAAGCACAGCCGCGATTGGCATTGCAGACGTCCAGGAGTGTGCATCGCCCGGGCAGCAAAAGCTCTCCCCTCCCACCATGCTCTACACGGACAAAATAAGTCTGAGCTCCATAGGGTTAGTTTCCAGTGAGCATCTGAGCGAGGATCCGAGCGGCAGTGACCCCAGCCCGGCCGGGGAATCGCGCAGCATCGACTCCCTGGAGTCCTTCTCCAACCTGCACTCCTGCCCCAGCTCCGACCTGACCAGCGAGGGGGCCGAGGACAGGGTGCTGGCCAGCGCCCTGCAGAGCGACGAGCTCGGAGCCGGGGGTGCCCAACTCGCCGTCCCCGTCAAGGACCGCGGCGCCGGCCAGTCCGTCTACCACATCAAGTGGATCAAGTGGAAAGAGGAGAGCACCCCCATCATCACCCAGAACGAGAACGGGCCGTGTCCCCTACTTGCCATCATGAATGTCCTTCTGCTGGCGTGGAAGGTGAAGATGCCCCCTATGATGGAGATCATCACAGCAGAACAGCTGATGGAATATCTAGGAGACTACATTCTCGATGCCAAACCCAAAGAGATCTCTGAAGCTCAGCGATTAAACTATGAGCAGAACATGAGTGATGCCATGGCTGTGCTGCACAAGTTGCAGACGGGGCTGGATGTCAATGTAAGGTTTACGGGAGTGCGTGTCTTCGAGTACACGCCCGAGTGCATAGTTTTCGACCTGCTCGACATCCCACTGTACCACGGCTGGCTCGTCGACCCGCAGaTGAGTGACATTGTGAAGGCAGTGGGGAACTGCAGCTACAACCAGCTGGTGGAGAAGATAATCTCTTGTAAACAGTCCGATAACAGCGAGCTGGCAGGGGAAGACCGGCTTCCAGAAAGCTGTACTCTGAACTGGGAGAAGCAGTGCACCATGGGAGGTCACTCACAGCAGACACCATCTGTTGATGAAGTCATGCAGTCTTCACTCAAATCTCATTGCACAACGGACACAGTGGAGGCCCTTGGCTTCGTGGCAGAGCAGTTCCTCCACAACACAGCCACCCAGCTGACCTATCACGGGCTGTGCGAGCTCACATCCACTGTGCAGGAGGGCGAACTCTGCGTCTTCTTCAGGAACAACCACTTCAGCACCATGACCAAGTACAAGtgtGAGGGGAGGGTGGGGACAGGCCTCTGGGGTGGTTTCCGGGTGCTGCACAAATGCACGGCCCTTCcatag

Function

GO: NA

KEGG:

id description
K01309 MINDY1_2; ubiquitin carboxyl-terminal hydrolase MINDY-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007480 True 2827 mRNA 0.49 8 19800374 19818066

Neighbor

gene id symbol gene type direction distance location
AMCG00007479 NA coding downstream 48579 19724207 ~ 19751795 (-)
AMCG00007477 NA coding downstream 82578 19714193 ~ 19717796 (-)
AMCG00007474 NA coding downstream 147531 19643953 ~ 19652843 (-)
AMCG00007475 NA coding downstream 177432 19603095 ~ 19622942 (-)
AMCG00007471 mcee,LOC107750491,LOC107670763,LOC106587249 coding downstream 217147 19580418 ~ 19583227 (-)
AMCG00007485 NA coding upstream 107371 19925437 ~ 19929389 (-)
AMCG00007486 NA coding upstream 116070 19934136 ~ 19941835 (-)
AMCG00007484 NA coding upstream 125789 19943855 ~ 19957453 (-)
AMCG00007492 NA coding upstream 211066 20029132 ~ 20032795 (-)
AMCG00007491 NA coding upstream 216629 20034695 ~ 20053654 (-)
G24003 NA non-coding downstream 220390 19579781 ~ 19579984 (-)
G23982 NA non-coding downstream 319287 19480014 ~ 19481087 (-)
G23875 NA non-coding downstream 898777 18901365 ~ 18901597 (-)
G23867 NA non-coding downstream 932895 18866767 ~ 18867479 (-)
G23854 NA non-coding downstream 970287 18829865 ~ 18830087 (-)
G24102 NA non-coding upstream 49792 19867858 ~ 19912916 (-)
G24213 NA non-coding upstream 470457 20288523 ~ 20288842 (-)
G24216 NA non-coding upstream 512634 20330700 ~ 20330902 (-)
G24218 LOC100538179 non-coding upstream 517005 20335071 ~ 20337168 (-)
G24219 NA non-coding upstream 519235 20337301 ~ 20339909 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 622 19791701 ~ 19799752 (-)
G23838 NA other downstream 1022736 18776360 ~ 18777638 (-)
AMCG00007418 fem1b other downstream 1592354 18202459 ~ 18208020 (-)
G23661 NA other downstream 1741425 18055470 ~ 18058949 (-)
AMCG00007375 NA other downstream 3178469 16469467 ~ 16621905 (-)
AMCG00007487 NA other upstream 97080 19915146 ~ 19923153 (-)
AMCG00007494 NA other upstream 353263 20171329 ~ 20222004 (-)
G24217 NA other upstream 513447 20331513 ~ 20331811 (-)
AMCG00007500 NA other upstream 644438 20462504 ~ 20472919 (-)
AMCG00007565 gatm other upstream 2522533 22340599 ~ 22358446 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013840 mindy1 coding NC_007130.7 CM002903.2 7453996 ~ 7478597 (+)