AMCG00007483


Basic Information

Item Value
gene id AMCG00007483
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19939170 ~ 19951428 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007483
ACTGACGGAGCAGTAGCCCAGCTTCAGCAGGGTGTCCCCGAGGCAGACCCCCTGCCCTGGGCTGTAGCAGCTCACCACTTTCTGGTAGAATCGGGCGGCCTTGGCGTACTCCTCCATGTGGTCGTAGGCAATGGCGATGTTGAAGTGCATGTCAGCGTTCCTGTCCTCGGGATCCATGAGCTTGCACTTCACAAAGCACTTCAGGCCTTTCTTGGCATTGCCTGCCGCCACGTAGGCTGCCCCCAGGTTGAACAGACACATTCTCTTGGCTCGGCCTTCCAGCAGCTTGCAGGACAGCAGAAAGGCCTTCTTGAAGAGGAACAGGGCCTGGTCCTGCCGATCATCCTTCATTGCCTCCTTGCCAGCCCTGCCAGCGAAGACCAGCCTAGTCGCTGCTGTGAAGGACTGCCGTCTGTGTTGACAGCCGCCCTGGAGACGCTGGTGAGGGTGTACAACCTGGGGGCGCAAGACTTGGCACACCCAGCACTGGGACGGTGTTTCTGCGGCTCAGTGTGGTGTAGCTCGATGAAGAGCAGGTACAGCACAGCTCCCACGATCCCCCCCACCAAGGGCCCGGCCACGGGAATCCACCACCAGTTATTGCCAGCACTGGCGAGACAGGAAGGGATGCCACCATGGGAACAGGAAGTACCATCCACGCATGCACGACTACAGTCTGGGAAAACACTGTTCAATCAGTCTGCCAATATTGAGCTGGATTATGGGAGGTTGAGAGCTTGGGATGGAAGGCAAAACCTGAGGACACCGTGGCCCACCACATCACTACAGTCCCACTCAGCCTGGCTTGGCTGGAGAAGAAGCAGGATGTGGAGGATTCCTTGGTGGGACACTTTTGTACTCACCATAGTAGAGCCCGTACACGGCGGCCGCTCCAGCAAACGCCCCAAGAAACTGGGCCACTACGTACACTGGGAACTTCACCAGCTTCAGCTTGCCCAGGACcagcatggccagggagactgCTGGATGCTCTCTGTAGCTCACTTGCCAGGTCAAGTGGAAGATGTGGTCTCCCTGGCAGTGGTCCGGTCAGCCACAGTTCGATGGGCA
>TU30211
CcacattttaatgatgtattttCAGTCATGTACACATTTGTCATAGTATTTCTCATGTTTGTATCAGTATACCAAGAACAcatacaatttataaaatattttaataaggacaacagggaaaatattttcattaagaCAGACAtaactatatctatatattactATATGTAAACCAGTattaatataatgcattatCTACATACTTAGCTTtcatttcataattgttttgaaCAAAATCTGCAACATAAACAACAGTATGGAAAGTAAAGCAACAGAAAAGACAATTATCAATGAAAGTGCCTTTGCCTAGGAAGAGAAACAAGGATATAACAGTAACAACataaagagtaaaaaaaaatcaagaacaaTGTTTTTGCCTGGATAAAAGAAGCAATTACTAAACACaacacattcattaaataattgaattacataACAAACCCACAGTGACAGAGAAACTGTGCTACAGAGCAGCTATCTACCGTGGCAAGATACTTATTTTACACTTATGTCTATCCCTTTCTATGAACTGCATACTCAATGGTTTGTCTGAACCAGGAGGATTGAAAAGCTGGCAGctagtgttttgtttctgtttgtttcatgATGGTATATACTTTTTGTGCTTCCTACCTAGCACAACTGCATAACACATTATCTTACATAGAAAAGTGTTAGTGAAGATCTGTACTGATAAACCTAATGCATGTTAAGGCTGATTtctgtaagaaaaaataaagaaaaaaatgctgtgcaTGTAGATGTATTCGTACATGCGTGTGCAATCATCAGGTCAACTGTAAATACAGACTCGGTGTTCATATTCTGGACATTAAAACTGAACATAGAACAGTAAAATATTCATGGCGCATGTGAAGGATGGTGGAGAAAGTGTTCACTCTTTAAAGGCATACAGCATGCTATTagtgtacattttcattatggCTCTCAATTTTAGGAATTAAGGAAGCCATCTAGGGCCAGGATCTTGGCTGCCTTGACACTTCGTGCTTCCCTGAGGGGTTTTGGTTGACAAATGTGGTGATGCTGTTCAGTAAAGGGCTAGGAGGGTTATACCTCATGTTTTCAGAAAATTAAAGGTTAGAACCTCACTCTAGAAAGCTTAATAATGGTATTCCCTGTGTACAGCTTCACATGCTAGAACTCTCTGCATATACGAAGAATGAAAAtctacaaaaaagtaaaaaagtgattttgtttgtgtgaaagtgtgttttgTACTGAGGGGCTTGGTCAGGGTTGTGTTTAGATGCCTTTTCTCATACATCATGTTCAAGAAGCACCAACCCTCAGAGAGGCCTGTCTGAGATGGAAGTCCTTGGGTCTAAGTTAGCAGTGCTGAGACATGCGGTGGCCTGGGGGGGGGTCAGGGAGCCCTGTAGGGCCTTAACTCATGGTGATCATTTCGTACTTGTCCTTGACGTTGTTCTCCTCCTCCAAGTGTTTCTGCGGCTCAGTGTGGTGTAGCTCGATGAAGAGCAGGTACAGCACAGCTCCCACGATCCCCCCCACCAAGGGCCCGGCCACGGGAATCCACCACCAGTTATTGCCAGCACTGGCGAGACAGGAAGGGATGCCACCATGGGAACAGGAAGTACCATCCACGTCAACACTTACCTGATCGATGAAGCCATTCAGGATTGACAGATGTCTTCCTGGGTACGAAGCAAAAATCTGTGCAGTAGCATTGGGGCCAGTAACAGTCAGAATGCCGTTGGTATAATCCATAAAGGca

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007483 False 1071 mRNA 0.58 6 19939170 19951428
TU30211 True 1756 lncRNA 0.40 2 19943879 19949591

Neighbor

gene id symbol gene type direction distance location
AMCG00007482 adam10,LOC101172489,LOC108428395,LOC106587342,LOC107704208 coding upstream 29058 19881068 ~ 19910112 (+)
AMCG00007478 sltm,LOC106587340 coding upstream 146412 19780577 ~ 19792758 (+)
AMCG00007476 myo1e,LOC102792200,LOC103362848 coding upstream 225067 19666801 ~ 19714103 (+)
AMCG00007473 NA coding upstream 336211 19592421 ~ 19602959 (+)
AMCG00007472 mcee coding upstream 348270 19580414 ~ 19590900 (+)
AMCG00007488 aldh1a2 coding downstream 27512 19978940 ~ 19992609 (+)
AMCG00007497 NA coding downstream 286411 20237839 ~ 20251499 (+)
AMCG00007495 NA coding downstream 316732 20268160 ~ 20275806 (+)
AMCG00007496 LOC100538179,LOC107571204,LOC107741823 coding downstream 374048 20325476 ~ 20335371 (+)
AMCG00007499 nedd4,LOC103371920,LOC102785817 coding downstream 419786 20371214 ~ 20385040 (+)
G24088 NA non-coding upstream 120825 19815795 ~ 19818345 (+)
G24085 NA non-coding upstream 135704 19802853 ~ 19803466 (+)
G24083 NA non-coding upstream 139218 19799485 ~ 19799952 (+)
G24040 NA non-coding upstream 288296 19650656 ~ 19650874 (+)
G24030 NA non-coding upstream 308563 19629304 ~ 19630607 (+)
G24156 NA non-coding downstream 110545 20061973 ~ 20091627 (+)
G24167 NA non-coding downstream 153292 20104720 ~ 20105070 (+)
G24202 NA non-coding downstream 304718 20256146 ~ 20256402 (+)
G24205 NA non-coding downstream 313965 20265393 ~ 20265614 (+)
G24212 NA non-coding downstream 385893 20337321 ~ 20339803 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 883037 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 924271 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 1368698 18567242 ~ 18570472 (+)
G23724 NA other upstream 1646832 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 1714234 18217730 ~ 18224936 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 1108731 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 2180145 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 2237817 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 2312092 22263520 ~ 22266409 (+)
G24606 NA other downstream 2330272 22281700 ~ 22282958 (+)

Expression


Co-expression Network