AMCG00007494


Basic Information

Item Value
gene id AMCG00007494
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20171329 ~ 20222004 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007494
CAAAAATGTCTGCCTAAGGGAAACTCGTAAGTTACATTCAGggaatattttgcaaaaatATTACTGAAAACACCTTCATTGTAAAAGCGAGCAGACGCGAAGAAGGAATACAAGGCTTCCGTTTTCAGCTCCGATCGCCCTAGTTGGATTTTTAGACGGGAAAAGGTAAAGATCGTAGTGAGTTTGAAGAAAGGGGTTCGGACTGGGGGAAAGAAGTTGGGATACAAGAAAAGACTATGGAGCTGGTTTGAACCAAGGGTCGGCATTTGATTTACTACTTTTACTTCAAATTGCATCTTACCATCTACTCTAATTAACGAAGAAAGCACGATCTCTAAGATATACCTGTGCATTTGTAATGCGACAATCCAAACatatctattttcttttctttttaaagcactgaCCGTTTTTCAATCAAGAACCTGAGCAAATTGCAACAACCAGACGAGTTACAAACGACCCTTTCCAAGCATGCATAACGAAGTGTAATGCGCTGCGAATAACAACACATCCGAGCAAAAGTTACTTGTTACCGAACAGGCTTTTTAGCAAAGTGTGAACCATacctttatttgtttctggccacAATCTGATGTTGCCGATGCGAAAGTCGCTTGTCGGTTgtgttgtgcatttatttacactgtCCAGTGCCAATTGGATTGCAACATTTCATTGTATCGATTTGTGCTGGAAATGTGTCTTCATAGCTCCCCAGACGTGATTTGGTCTTTGAGGTCTGATAGGTGTAGCAGGAGGGACAGACAGTAGATACTTACTACACCGAAAGTCACATCTATTGTTACAACTGTCGCCAAACGCtggttcgtttttttttttatttatttcttttttcgtGGGTCCCTGAAGAATTTGTGCGCGTGCAATCCTAGGGTGTAGTTGCAGCAGATCAAGATGAACCCACAGCAGCGGATTGCCGCTATTGGAACAGATAAGGAGCTCAGCGATCTGTTGGATTTTAGTGCGATGTTCTCTCCACCTGTTAACAGTGGGAAAAACAGACCTACTACTCTGGGAAGCAGTCAGTTCAGTGCACCAGGTATGGAGGAGAGAGCGAACTCGGGGTCCTGGGGAGCGGGGGGCCAACCCAGCCCTTCATACGAATCCTCCCGGGGTTTTGCAGACAGTCCTCATTACGGAGATCACTTGAGTGACAGTCGATTAGTGTCCCATGAAGGATTGTCCCCGACACCTTTCATGAACTCCAGTCTAATGGGCTCCTATCCCCATAACCCGTACGTCCTGGGCAGCCTGCCTGGGGAGCCGCTGGTGTCACAGCGCCTGGCTCTTTGGGGGCAGGGAGAGATCCTGTATCTGGGTGTTGACACGACCTCCTCCTCCCCTGGCACAGCCAAGCAACCAATGCCAATAAAAACCTTTGTGGGCATTCAATAA
>TU30293
CCACATCTCTGGCTCCGCTTGGCGGAAGGATACCGCACTGAGCGTCAACGTGGTGCTGAGGCTTGCGAAGCAAAAATGTCTGCCTAAGGGAAACTCGTAAGTTACATTCAGggaatattttgcaaaaatATTACTGAAAACACCTTCATTGTAAAAGCGAGCAGACGCGAAGAAGGAATACAAGGCTTCCGTTTTCAGCTCCGATCGCCCTAGTTGGATTTTTAGACGGGAAAAGGTGTAGTTGCAGCAGATCAAGATGAACCCACAGCAGCGGATTGCCGCTATTGGAACAGATAAGGAGCTCAGCGATCTGTTGGATTTTAGTGCGATGTTCTCTCCACCTGTTAACAGTGGGAAAAACAGACCTACTACTCTGGGAAGCAGTCAGTTCAGTGCACCAGGTTCTTACATCTCAAGTAGTTTTTTTAGGTCGAAGCAAGTGATGCAGATTGTTTGATGTGCAAGCAGTGATGGAGGGGACAGAAGGGTGCAGTCAGGCTCTTAGCTGATGGACAGGAGCATCACACGAAAGATGGGACTGCTAGAAAAGACTggagagagacaaagaaaagaaaagaaaagaaaaggcaccccccccaaaaaaaaccccaaaacaaaccaaaaaatgacCATGAGACATCATGGTAGAGAAATAGAGATGCCCAACATggagaaatcaaaagaaatgagagaaaataTCCTTAAGTGCTGAAGAGTGAGCACTATATGAGCAGAGctgtggagggggtggggtgtggTGATGGGTTATGACAGAAAATTACAAGTAGGAGAAGTTTACAAGAGAGGGGATTGAAGTGATCAGAGCTGGCACACACAACTCCATGTCAGTTGTGCAGAAGACTGGTTAATTGGCATCAGTGCTGTTCCCCCATGCCCTACCTGTAAGTCAAGGGTAAAACAAGGCCTAGTGTTTGTTCGTCACATTTATTAGCaccaattattttaatcttaattgCATTCTAAACTCAACCATGGAGTAGATCTAATTTTTCTGTGAACTAGGGACTCCACAAAAGATGCCTGACTTCATAACCATCAGACCCATTTCTGCGTGGCTGTGATTTAATCGATACAAAGATTTCTCTGTGTGCTCTTCTGtagaattaaattatatatttttaacgattatattttatttgtactgttttgttttttcatgatgcaggtaataaaaaatgtgatccat
>TU30294
CCACATCTCTGGCTCCGCTTGGCGGAAGGATACCGCACTGAGCGTCAACGTGGTGCTGAGGCTTGCGAAGCAAAAATGTCTGCCTAAGGGAAACTCGTAAGTTACATTCAGggaatattttgcaaaaatATTACTGAAAACACCTTCATTGTAAAAGCGAGCAGACGCGAAGAAGGAATACAAGGCTTCCGTTTTCAGCTCCGATCGCCCTAGTTGGATTTTTAGACGGGAAAAGGTAAAGATCGTAGTGAGTTTGAAGAAAGGGGTTCGGACTGGGGGAAAGAAGTTGGGATACAAGAAAAGACTATGGAGCTGGTTTGAACCAAGGGTCGGCATTTGATTTACTACTTTTACTTCAAATTGCATCTTACCATCTACTCTAATTAACGAAGAAAGCACGATCTCTAAGATATACCTGTGCATTTGTAATGCGACAATCCAAACatatctattttcttttctttttaaagcactgaCCGTTTTTCAATCAAGAACCTGAGCAAATTGCAACAACCAGACGAGTTACAAACGACCCTTTCCAAGCATGCATAACGAAGTGTAATGCGCTGCGAATAACAACACATCCGAGCAAAAGTTACTTGTTACCGAACAGGCTTTTTAGCAAAGTGTGAACCATacctttatttgtttctggccacAATCTGATGTTGCCGATGCGAAAGTCGCTTGTCGGTTgtgttgtgcatttatttacactgtCCAGTGCCAATTGGATTGCAACATTTCATTGTATCGATTTGTGCTGGAAATGTGTCTTCATAGCTCCCCAGACGTGATTTGGTCTTTGAGGTCTGATAGGTGTAGCAGGAGGGACAGACAGTAGATACTTACTACACCGAAAGTCACATCTATTGTTACAACTGTCGCCAAACGCtggttcgtttttttttttatttatttcttttttcgtGGGTCCCTGAAGAATTTGTGCGCGTGCAATCCTAGGGTGTAGTTGCAGCAGATCAAGATGAACCCACAGCAGCGGATTGCCGCTATTGGAACAGATAAGGAGCTCAGCGATCTGTTGGATTTTAGTGCGATGTTCTCTCCACCTGTTAACAGTGGGAAAAACAGACCTACTACTCTGGGAAGCAGTCAGTTCAGTGCACCAGGTTCTTACATCTCAAGTAGTTTTTTTAGGTCGAAGCAAGTGATGCAGATTGTTTGATGTGCAAGCAGTGATGGAGGGGACAGAAGGGTGCAGTCAGGCTCTTAGCTGATGGACAGGAGCATCACACGAAAGATGGGACTGCTAGAAAAGACTggagagagacaaagaaaagaaaagaaaagaaaaggcaccccccccaaaaaaaaccccaaaacaaaccaaaaaatgacCATGAGACATCATGGTAGAGAAATAGAGATGCCCAACATggagaaatcaaaagaaatgagagaaaataTCCTTAAGTGCTGAAGAGTGAGCACTATATGAGCAGAGctgtggagggggtggggtgtggTGATGGGTTATGACAGAAAATTACAAGTAGGAGAAGTTTACAAGAGAGGGGATTGAAGTGATCAGAGCTGGCACACACAACTCCATGTCAGTTGTGCAGAAGACTGGTTAATTGGCATCAGTGCTGTTCCCCCATGCCCTACCTGTAAGTCAAGGGTAAAACAAGGCCTAGTGTTTGTTCGTCACATTTATTAGCaccaattattttaatcttaattgCATTCTAAACTCAACCATGGAGTAGATCTAATTTTTCTGTGAACTAGGGACTCCACAAAAGATGCCTGACTTCATAACCATCAGACCCATTTCTGCGTGGCTGTGATTTAATCGATACAAAGATTTCTCTGTGTGCTCTTCTGtagaattaaattatatatttttaacgattatattttatttgtactgttttgttttttcatgatgcaggtaataaaaaatgtgatccat
>TU30296
CCACATCTCTGGCTCCGCTTGGCGGAAGGATACCGCACTGAGCGTCAACGTGGTGCTGAGGCTTGCGAAGCAAAAATGTCTGCCTAAGGGAAACTCGTGTAGTTGCAGCAGATCAAGATGAACCCACAGCAGCGGATTGCCGCTATTGGAACAGATAAGGAGCTCAGCGATCTGTTGGATTTTAGTGCGATGTTCTCTCCACCTGTTAACAGTGGGAAAAACAGACCTACTACTCTGGGAAGCAGTCAGTTCAGTGCACCAGGTTCTTACATCTCAAGTAGTTTTTTTAGGTCGAAGCAAGTGATGCAGATTGTTTGATGTGCAAGCAGTGATGGAGGGGACAGAAGGGTGCAGTCAGGCTCTTAGCTGATGGACAGGAGCATCACACGAAAGATGGGACTGCTAGAAAAGACTggagagagacaaagaaaagaaaagaaaagaaaaggcaccccccccaaaaaaaaccccaaaacaaaccaaaaaatgacCATGAGACATCATGGTAGAGAAATAGAGATGCCCAACATggagaaatcaaaagaaatgagagaaaataTCCTTAAGTGCTGAAGAGTGAGCACTATATGAGCAGAGctgtggagggggtggggtgtggTGATGGGTTATGACAGAAAATTACAAGTAGGAGAAGTTTACAAGAGAGGGGATTGAAGTGATCAGAGCTGGCACACACAACTCCATGTCAGTTGTGCAGAAGACTGGTTAATTGGCATCAGTGCTGTTCCCCCATGCCCTACCTGTAAGTCAAGGGTAAAACAAGGCCTAGTGTTTGTTCGTCACATTTATTAGCaccaattattttaatcttaattgCATTCTAAACTCAACCATGGAGTAGATCTAATTTTTCTGTGAACTAGGGACTCCACAAAAGATGCCTGACTTCATAACCATCAGACCCATTTCTGCGTGGCTGTGATTTAATCGATACAAAGATTTCTCTGTGTGCTCTTCTGtagaattaaattatatatttttaacgattatattttatttgtactgttttgttttttcatgatgcaggtaataaaaaatgtgatccat

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007494 False 1419 mRNA 0.46 7 20171329 20221934
TU30293 False 1207 lncRNA 0.43 4 20211019 20222004
TU30294 True 1939 lncRNA 0.42 4 20211019 20222004
TU30296 False 1068 lncRNA 0.43 4 20211019 20222004

Neighbor

gene id symbol gene type direction distance location
AMCG00007489 NA coding downstream 28596 20112050 ~ 20142733 (-)
AMCG00007490 NA coding downstream 70608 20061932 ~ 20100721 (-)
AMCG00007491 NA coding downstream 117675 20034695 ~ 20053654 (-)
AMCG00007492 NA coding downstream 138534 20029132 ~ 20032795 (-)
AMCG00007484 NA coding downstream 213876 19943855 ~ 19957453 (-)
AMCG00007493 NA coding upstream 46667 20268671 ~ 20285201 (-)
AMCG00007502 NA coding upstream 265427 20487431 ~ 20492501 (-)
AMCG00007507 NA coding upstream 365568 20587572 ~ 20589199 (-)
AMCG00007508 unc13c,LOC108411445 coding upstream 384179 20606183 ~ 20618162 (-)
AMCG00007511 unc13c,LOC108411445 coding upstream 426253 20648257 ~ 20676334 (-)
G24102 NA non-coding downstream 258413 19867858 ~ 19912916 (-)
G24003 NA non-coding downstream 591345 19579781 ~ 19579984 (-)
G23982 NA non-coding downstream 690242 19480014 ~ 19481087 (-)
G23875 NA non-coding downstream 1269732 18901365 ~ 18901597 (-)
G23867 NA non-coding downstream 1303850 18866767 ~ 18867479 (-)
G24213 NA non-coding upstream 66519 20288523 ~ 20288842 (-)
G24216 NA non-coding upstream 108696 20330700 ~ 20330902 (-)
G24218 LOC100538179 non-coding upstream 113067 20335071 ~ 20337168 (-)
G24219 NA non-coding upstream 115297 20337301 ~ 20339909 (-)
G24221 NA non-coding upstream 122035 20344039 ~ 20344379 (-)
AMCG00007487 NA other downstream 248176 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 371577 19791701 ~ 19799752 (-)
G23838 NA other downstream 1393691 18776360 ~ 18777638 (-)
AMCG00007418 fem1b other downstream 1963309 18202459 ~ 18208020 (-)
G23661 NA other downstream 2112380 18055470 ~ 18058949 (-)
G24217 NA other upstream 109509 20331513 ~ 20331811 (-)
AMCG00007500 NA other upstream 240500 20462504 ~ 20472919 (-)
AMCG00007565 gatm other upstream 2118595 22340599 ~ 22358446 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 2339492 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 3184924 23406928 ~ 23420303 (-)

Expression


Co-expression Network