AMCG00007497


Basic Information

Item Value
gene id AMCG00007497
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20237839 ~ 20251499 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007497
CACCGGCGTGTGTGCATCGCAAACTGCACGCGAGCCGCCCCGGCGCTGCCGAGATCATGCAGACTGGCCACAGAAACACGTTTTGCGTCTAATTACTCCTTACACACAAACGtttcaaaatgGCTGAACTTTTCATGGAATGTGAGGAGGAAGAGCTGGAGCCGTGGCAGCGAAGGATGCCGGAAGTAGTTGATGACGACGACGATGATGATGAGCCCATTTTTATTGGGGAGATCACCAGTTCTAAGGCATCTACAACCTCCAGGCAAAGCCCCGGTCCTACCTTTAAAGCCACAAACCAACACTACACAACCCCGGCTTCTCCTCCAAGTGTAATGGCAGTTTATCAGCCGGTCTCCAGGTCTGTTGGAGCGTCTGTGACATCCCAGCCTGCACCGAGGCCTTCTCCAACTCCCTCTTCTGCCGCAGTGTGCCGTAGCATCTCTGGGCCCATTGTGCCTCAAGTAGCAGTGAGACCTATGTCCCCAGCATCGCAgccagtcaccagatctctgCTCATTCCTGTGACAACACAGCCAGTGGACAGAGCTGGGCCAATTCCTATAGTCACACAGCACATGTCCAGAAATGTGACTGCGGTCACTGCCCAGCCAATAATTATAAATAGTCAGGCCTACATAATGAGTTCATCTCAGATATCCAATAACTCCACCTTGATGTTGGGTTTAAAATCAGGCTCGGGTGGTAATAACAACATTATAACTACATATCCGGGTGCCACATCCATCACTGTGCTTCCAgGGATTACCACGCAGTTTGGCCGACCTGTTCAGCAACTCACTCAAGTGCATCAAGTTACTCCAGTCCGAACAGTGTCGAACGCTGGTGTCAGACCTCAGCTGCAAGTTCCTTCCACTGTTCAGAATAACATTGTCAGTATTGCCAATGTGCAGAGTTCTTCACTGCCGGTCTCGACAAAGCTGCAGTCTCCACAGATGAACCCAGCAAAGCTGCAGCCCATACAAATGAGCACAGCGACCTTGCAACCAATACAGATGAGCTCCACGGCTCTGCAGGCAACCCCAGTCAGCTCTCCAAAACAACCGCCCTTACCTGTGATATCTCCCAAACTGCAGAACACACCTGTAGCTGTGAATAGAACAGGCAATGGTACTAACTCTGTTGCAAAACGCCCAGTTTCATCTGACACAAACAGTACCACTCCCAAAAAGGCCAAACTTGATTCGGggACGCCTTCAACAGCTTCTGGCAGTGTTAAAAATGGGACACCTTTCCTCAAAGCTTGCCCAAAGTGTAACGTTCATTTCAACCTCCCGGATCCTCTGAGGAATCACATGAGATACTGCTGCTATGAGATGTTGAATGTCTACTTCCCCACAACATCTAAGCAAGGGACGACAACCACGCAAGTCAAGGCTGCGGACACTGAGAAAGGAAAGCTCATCATGCTGGTGAAAGAGTTTTACTACGGGAAACATGAGGGGGAGCTGGGTGAAAAGGATGTGAAAACAAACCCCACGTTCAAGTGCTGCAGCTGCTTAAAAATTCTCAAGAACAATATAAGGTTCATGAACCACATGAAACACCATTTGGAGCTTGAGAAGCAAAGCAACGAGAGTTGGGAAAACCACACCACCTGCCAACATTGCTACCGCCAGTATTCGACGCCCTTCCAGCTGCAGTGCCACATCGAGAGTGCCCACAGTCCCTACGAATCCACTActAATTGTAAAATATGCGAGTTGGCGTTTGAATCGGAACAAGTGCTCTTGCAACACATGAAGGACAATCATAAGCCTGGAGAGATGCCCTATGTTTGCCAGAAAAAAGGTATTCACCGGTGTACCAAATGCCGACTACAGTTCTTAACCTGTAAGGAGAAAATGGACCACAAGACTCAGCACCATCGCACATTCAAGAAACCCAAATCCTTAGAAGGGCTCCCACCCGGAACCAAGGTGACTATCCGGGCTTCTTTGGCGTCCAGCGGGTCTCCAGCCTCTCCTAACTCAAGCAGTAGATCTATCGTAAGCATAGTCCCGAGCAGCCCCAATGCCAAACAATCGTCCAGGCCGCAGTCCAGTCAAGGAAAGCCCAAATCGGCCTCCCAGAACAAGAAGCAGGAACGACTGAACAATTCAAAGCAGCTGGATAGATGCAACTTGGCATTACGAAATTTACGAAATCATCTGGGAGCTCAGAAGTGCATTGAATGTTACTCTGAAATTAAGGACTTCTCTGCTCACTACCCATCCTTCGTGAGCTGTGTTTTATGCAAATACAGAACTAGCTGTTGCAAAGCCTATGGAAACCACATGATCAGGTTTCACAGCGCCAGTTCCAGGGGCCGGTTGCGAAAACGGAAGAAACCTTCAGGTAGCCTAcgGGGTATAACGCTAGTGTGTCTTAACTGTGATTTTCTAACGGATGCTTCTGGTGCTGACAACATGAGCAAACACCTGACTGACAGGCAGAATCACACCTGCCAAGTGATCATCGAGAAAGATGCTTCTGAAGTTTGCATTGGTGAAGAACGCAAACCtgaGCCTCAGGACAATCCTCGTGACAAGGAAACTGATGAATCTCAGaagAGTAAATGCCCAAGTGATGTTATTAAAGATTCTGCCAATCCTCTGGATATTGAAAGAAAAGAAACCAAGATGGATGACCCTGTCGATGGCGGCGATACAGAGACGCATGGTGATGGTCCAAAGGCAGTTTCGGGCGGCGGGGGAGCTCCCAAAGACACTTCCGAGGGCGAGGCCGACAACCTCAGCAGCACTGGGAGTGGGAGTGAAGCAAAGACCGAGCCCTCTGCAGCCAGCCAGGCCAAAGACCAAGCACAAGGCCCAGAGCAGGGCGAGCAGAGCCCAACGAGTGGGACGGCGGCCCCACGCGAAAACCTGAACAAGAACGATGCCTCTTCAGATTCGGCCAAGCCCCTCCCCAGCCCCACAGCCGGAGATGGAGAAGGTGTGGAAAGTGAGAAGAAGGAGGCCCGAGATGTGTCCTTCGAGCAGTTCCTGAGGAAGGTGGACGTGCCCGAGTCCATCAGTTCTGACGTAAGTGAGCAGGGCAGTGTCCACCTGGAGCCCCTGACCCCCTCCGAGGTTCTAGAACACGAAGCCACAGAGATTCTTCAGAAGGGCGGGGTCACGCCCGCTAAAAACAAAGCGGAGCCAGCCAGTGAATCTGCAGAGGAAATCAGCAATACCTCTAGCATTGACCAATCAAAGGACGTCTAGTCTAATAGAAGACCTGAAGGAAAGCTAAATGTTTGCAGgggtcttgtgttttttttttttttttgtatttgtaccaATAACTTTTCCCCTTCTttttatagatgtatttttcagacctttttttttttcttctgaaaatcaGATAAATTCTAGCCTTGATGAGaagcatgaaaataaaacatgacattttaagtTCTATAGAGTTTATATGTAAAATTTTACTATGCACCTGTAGGGGGTTGTAATCCTGCCAGGCTATAAACTGAATTTACAAAACTTTCAGTGAAAGTTGGACCGTAAACCTATGTAAATACTGTATGTTATTGTGCAGTTGTGCAGACCATGTAATGCAATTGTGTATATAAGGTACCACTGCTTCATTGTCCTAGTTTTAAATCTAAAGATACTCCCTTAGTATGGGACTAATGGATTGGGTGATAAACCAAAGTACGGTTACCCCTTTTGGACATTTTTAACatgctgctttttatttaatttaataggcATACTTTGCCATATGGCAGCTACTTCCAGCTAACTGTTACAGTTAGTGGCTTTTACGCATGTAGCGAAGAATGTATAGTGTATACTTAAGTGCTCTGTAGTAGAGTTCTactgtgtattgtatattgGGGGATCTTAGTATTTTTGCAACGCCTTTCAACTATAGATTTAGGAATGTCCATGTGGAGTGACTTTAGTAGCTTGCTTTGTAATCAAAGTTTGCTTCAATGCTtccttctgtatttttattttcctgtatattttgtattggtcATAATTTGCTTTGCTTCTGGGGAGAAAACAAACTCAATCCTAAGAGGTGTTTGGGGGCAGGGCGGGGGTAGTCAAGGTGTGGTTGCTTTTATTGAGCTGTAAATAAATCTTTTGGCGTTC

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007497 True 4124 mRNA 0.47 19 20237839 20251499

Neighbor

gene id symbol gene type direction distance location
AMCG00007488 aldh1a2 coding upstream 245230 19978940 ~ 19992609 (+)
AMCG00007482 adam10,LOC101172489,LOC108428395,LOC106587342,LOC107704208 coding upstream 327727 19881068 ~ 19910112 (+)
AMCG00007478 sltm,LOC106587340 coding upstream 445081 19780577 ~ 19792758 (+)
AMCG00007476 myo1e,LOC102792200,LOC103362848 coding upstream 523736 19666801 ~ 19714103 (+)
AMCG00007473 NA coding upstream 634880 19592421 ~ 19602959 (+)
AMCG00007495 NA coding downstream 16661 20268160 ~ 20275806 (+)
AMCG00007496 LOC100538179,LOC107571204,LOC107741823 coding downstream 73977 20325476 ~ 20335371 (+)
AMCG00007499 nedd4,LOC103371920,LOC102785817 coding downstream 119715 20371214 ~ 20385040 (+)
AMCG00007498 LOC106596491 coding downstream 163865 20415364 ~ 20428546 (+)
AMCG00007501 NA coding downstream 190004 20441503 ~ 20446920 (+)
G24167 NA non-coding upstream 132769 20104720 ~ 20105070 (+)
G24156 NA non-coding upstream 146212 20061973 ~ 20091627 (+)
G24088 NA non-coding upstream 419494 19815795 ~ 19818345 (+)
G24085 NA non-coding upstream 434373 19802853 ~ 19803466 (+)
G24083 NA non-coding upstream 437887 19799485 ~ 19799952 (+)
G24202 NA non-coding downstream 4647 20256146 ~ 20256402 (+)
G24205 NA non-coding downstream 13894 20265393 ~ 20265614 (+)
G24212 NA non-coding downstream 85822 20337321 ~ 20339803 (+)
G24220 NA non-coding downstream 92586 20344085 ~ 20344387 (+)
G24252 NA non-coding downstream 235646 20487145 ~ 20487683 (+)
AMCG00007483 NA other upstream 286411 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 1181706 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 1222940 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 1667367 18567242 ~ 18570472 (+)
G23724 NA other upstream 1945501 18290108 ~ 18292338 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 808660 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 1880074 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 1937746 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 2012021 22263520 ~ 22266409 (+)
G24606 NA other downstream 2030201 22281700 ~ 22282958 (+)

Expression


Co-expression Network