AMCG00007503 (rsl24d1,LOC105018348)


Basic Information

Item Value
gene id AMCG00007503
gene name rsl24d1,LOC105018348
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20513733 ~ 20518119 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007503
GTCTTCTCACCCAAGATGGCGGCTGCAGTTCCGTTCAGACGCACAATACAGGAAAATCGTCCAGTTCTATTCTTTGTCTATGGTGGCAGcatgtatattttgatttaacccTTAAACCCGGAAGTTCAACGTTACTACTTCCTTTCATAACCACTCCATGCTTGTGTGTGGAGTGTGGGGATTcaggtgctttttaaaaacgCTGAAATCCAGTAAATATGCGTAttgagaaatgttatttttgctCCGGGCCTATTTATCCAGGCCACGGAATGATGTTTGTCCGAAATGACTGCAAGATGTTTAGATTCTGCAAatcaaaatgtcacaaaaacTTCAAGAAGAAGCGTAATCCCAGAAAGATAAGGTGGACCAAGGCTTTCCGAAAAGCATCCGGGAAGGAGTTAACAGTGgaTAACGCTCTAGAGTTTGAGAAGCGCAGAAATCTTCCAGTCAAATACCAGAGGGAACTGTGGAGCAAGACAGTGGAAGCCATGAAGAAAGTAGAAGAAATCAAACGCAAGAGACAGGCAAGATTCATCATGAACAGACTGAAGAAGGGCaaggagctggagaaggaggaagCCATCACAGAGGTGAAGAAGAACATCCACCTAATCAGAGCTCCACATGCCGgaaaagaaaagctggAGGATAAGATCAAGATTAAGAACGCCCAATTGCAAGATGTGGAAATGTCTGACTCTTAAAAGATGTCTGACTGCTTCTGTTCTACAATGAAATACTATGGCTTTTGGAGGGAAGACACATTCAAGCAGATCTTTAAGCTCTTTAAGACATTTTAGCTTTTATTTAGAAAGTTTTCCCCTTCTACAACTCCTACAAGCTCACAGTTACAGGCAACAGAGAAAGTCACAATCTTTTCTTTAATGCTGAAACATGTGATGTAATGCACCCCTCCAACCCCCCAATGAGGGGAGGGAAATCAAACTGctccaattaaaaacacacatatattcattGTCAAGCTAATGTTGGAACAACAACATCAAAGAGTTgctatacatttgaaattactGATGTGTGAATGTGAAGCGTTTTGATGGATCAAGCAACATGCATATTAAATATGGTTAACGAAGTTGCCTGTTTTATTCCAGgttgtgtctgtatttttctatgATGTGATCAAAAGGTGCATGGTTGTTCTATTCTGCtcgatttcattttttaatggagAAGAAACCAATCCCTTTTTCATAATATACAGTCACAGGCCTTTGGTCCTCCTGTTTTCTGATGTGCTCTTCCTCTTGGGCGGCTGACGGGGTGCCATGCGGTTTGAAATCACCAAGggttcattattaaaattacataaatgataataaatagaATCCGACATCTACCAGTAAGTCATGGATGTTTTTGAGCAGGTTAGAATCCATGCAATTACGAGAACAAAATTATTCTAAGTAGGGTTTTCGACATTAATTATTTGtgagagattttaaaatgtgtacaacAACACGTTTGTTTTGTCGTCATAGCAATATggaattcaatttatttttcagtggaagaaagggaaatatttctatatgaaaataatgcacCAATTATAGTACTGCTGTTATTACcacaaataataatgcagtttgtttttctctattaTGCTGCTGAAATATGTTCCTTTCTGGGGCATTTTAAGCTTAATTGTCTCCATTAGATGCCCCATTCACGAGGCCTCTGTACAAAATAGGCATTCTTCCTTATAACgatcatttccatttctgtagGGTAATGAATCATTTGCTAGCCCATTTTCAATTAGCCCAGGTGTAAGCATGAGGAAAGTTAGTCTGTGCAGG

Function

symbol description
rsl24d1 Predicted to be involved in ribosomal large subunit biogenesis. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in nervous system and somite. Orthologous to human RSL24D1 (ribosomal L24 domain containing 1).

NR:

description
probable ribosome biogenesis protein RLP24

GO: NA

KEGG:

id description
K02896 RP-L24e, RPL24; large subunit ribosomal protein L24e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007503 True 1829 mRNA 0.39 6 20513733 20518119

Neighbor

gene id symbol gene type direction distance location
AMCG00007504 rab27a,LOC106587426,LOC106562223 coding upstream 1374 20504899 ~ 20512359 (+)
AMCG00007505 NA coding upstream 26695 20472817 ~ 20487038 (+)
AMCG00007506 NA coding upstream 42908 20466726 ~ 20470825 (+)
AMCG00007509 NA coding upstream 50780 20461259 ~ 20462953 (+)
AMCG00007501 NA coding upstream 66813 20441503 ~ 20446920 (+)
AMCG00007512 onecut1,LOC107676486,LOC107746960,LOC107712763 coding downstream 481895 21000014 ~ 21009567 (+)
AMCG00007513 fam214a coding downstream 530800 21048919 ~ 21056851 (+)
AMCG00007516 myo5aa,myo5a,LOC107746947 coding downstream 567867 21085986 ~ 21125981 (+)
AMCG00007518 myo5c coding downstream 613121 21131240 ~ 21146416 (+)
AMCG00007519 NA coding downstream 633458 21151577 ~ 21159558 (+)
G24256 NA non-coding upstream 19728 20492904 ~ 20494005 (+)
G24258 NA non-coding upstream 21116 20492396 ~ 20492617 (+)
G24255 NA non-coding upstream 23977 20489297 ~ 20489756 (+)
G24254 NA non-coding upstream 24531 20488531 ~ 20489202 (+)
G24253 NA non-coding upstream 25356 20487805 ~ 20488377 (+)
G24310 NA non-coding downstream 358465 20876584 ~ 20876785 (+)
G24311 NA non-coding downstream 362427 20880546 ~ 20880924 (+)
G24384 NA non-coding downstream 868106 21386225 ~ 21398047 (+)
G24570 NA non-coding downstream 1626720 22144839 ~ 22148238 (+)
G24654 NA non-coding downstream 1822617 22340736 ~ 22343616 (+)
AMCG00007483 NA other upstream 562305 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 1457600 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 1498834 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 1943261 18567242 ~ 18570472 (+)
G23724 NA other upstream 2221395 18290108 ~ 18292338 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 542040 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 1613454 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 1671126 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 1745401 22263520 ~ 22266409 (+)
G24606 NA other downstream 1763581 22281700 ~ 22282958 (+)

Expression


Co-expression Network