AMCG00007517


Basic Information

Item Value
gene id AMCG00007517
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21180850 ~ 21186026 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007517
GAAGTGACGGCCTCGGCCCTCCTTTTCGCCAGCTTCACAGGAGAGTGGACTGATACCGCTGGGAGGAAAATGTCCTGTTGGTTGAGAGAAGAGACCTTGTCCTTGGCTCGGGATTACATCGAGCACAGCCTGGGGCTCCAGCGGACACCTCCCAGCGAGACGGCCAAGGCTATGCGGTGCCTGGGCAAGGAGATGGAGAAGCAGCATCAGTCCAAGTTCAACTCTCTCCTGCACACTTTTATCACCACCTGCGGACCCGAGCCCAGCCTCAGCTTGAGGAAAGTCATGGAAGAAATGGTTGGAGATGGTAAATTAAACTGGGGAAGGGTTGTGTCTCTCTTCACCTTCACAGGAGTGTTGGCAAAGGAACTCTACAGCCAAGGAGAAAGCATGGACTGTTGTACAAAACTGGCCGAAACCATTGCCGACTACCTTGGCTCTGAAAAACGAGAATGGCTGATGCAGAATGAAGGCTGGGAAGGGTTCTGCAAGTTTTTCCAATCCGCAAAGGAGGTGAACCAGGAATCGACAATGAAGACGGCGCTGTTTGCAGCTGCTGGGGTGGGCATCGCTGGGATTACATTTCTCCTTGTGCGTTAGATTTCAGccccttttgtgtttttgtttgttttattattttagggTAAACTCAAGAATTTTTATATCCTTGGTTTTATTATTGCCTCCCTCATGCAAAGCGCCATAAATCCTGTGAGTTTGTctagtaattgttttaataactgGCATGTGGAGAGCATGTCTGAAAGATGGTAGATCCACAGTGTTGCAACGGCCTGAATGAAGACCAACcctgtaaaagaaaaatcagataCATTCATTATAGTTTGCGATTGCCATCATTTAAAACTCACAGTATTCTGTGCACAGACAATTATAGTTTCACATTTAGTGTTTAGTAGTAGTTTCCATATCTTTCCAGGgaaaacttttacattttaatgtttcactTTTAACGCACACtatttttcacaataattaCACATAAAATAAGACATTAAAATCCCTGCAATTTGCaccatagaaaataaatgtccatctattttttcttttgttttacatatagactgttttctctcattttaaaataatactgtaataatgcATGGATGTCCAAAATCCCATTCATGTTGTGGAATTCACTTATTTTAAGTGAtgggaaataatatatatatatataattatatatttatatgaaaataaaaaaatataaagaagttcatctgttttttccttttctgttcaCTGTCTTACAATCCAAGAATCTTGACAGAAAATCTTGGTTTAATGTGGATATTTTGTAAATGGTGCTTAATTTGGTGAAATCCTGCTTTAGATTTCCTGTCCGGCAGCACTGATTATGTTGACTTATACTGGTTATTTACAAGAATATTTGTCTGGGAATATAAAATAGTATACACATTTTTCTGCACATTGAGATCAatgaaaatcacttaaaacCCAACAGTGACCCTTNNNNNNNNNNtttttttttttttttttttttttttttaaataagttc

Function

GO:

id name namespace
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0007369 gastrulation biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007517 True 1541 mRNA 0.39 3 21180850 21186026

Neighbor

gene id symbol gene type direction distance location
AMCG00007515 gnb5,LOC103156493,LOC106947723,LOC106932415 coding upstream 3248 21162820 ~ 21177602 (+)
AMCG00007519 NA coding upstream 21292 21151577 ~ 21159558 (+)
AMCG00007518 myo5c coding upstream 34434 21131240 ~ 21146416 (+)
AMCG00007516 myo5aa,myo5a,LOC107746947 coding upstream 54869 21085986 ~ 21125981 (+)
AMCG00007513 fam214a coding upstream 123999 21048919 ~ 21056851 (+)
AMCG00007525 tmod3,LOC107588545,LOC107700589,LOC107746940,LOC108264495 coding downstream 95289 21281315 ~ 21282214 (+)
AMCG00007522 LOC102784726 coding downstream 106254 21292280 ~ 21298832 (+)
AMCG00007523 NA coding downstream 126026 21312052 ~ 21320111 (+)
AMCG00007524 NA coding downstream 150496 21336522 ~ 21349953 (+)
AMCG00007528 NA coding downstream 214760 21400786 ~ 21439286 (+)
G24311 NA non-coding upstream 299926 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 304065 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 686845 20492904 ~ 20494005 (+)
G24258 NA non-coding upstream 688233 20492396 ~ 20492617 (+)
G24255 NA non-coding upstream 691094 20489297 ~ 20489756 (+)
G24384 NA non-coding downstream 200199 21386225 ~ 21398047 (+)
G24570 NA non-coding downstream 958813 22144839 ~ 22148238 (+)
G24654 NA non-coding downstream 1154710 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 1264081 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 1267790 22453816 ~ 22454055 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 114067 21060159 ~ 21066783 (+)
AMCG00007483 NA other upstream 1229422 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 2124717 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 2165951 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 2610378 18567242 ~ 18570472 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 945547 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 1003219 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 1077494 22263520 ~ 22266409 (+)
G24606 NA other downstream 1095674 22281700 ~ 22282958 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 1947785 23133811 ~ 23139521 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012979 bcl2l10 coding NC_007129.7 CM002902.2 39106722 ~ 39119005 (+)