AMCG00007519


Basic Information

Item Value
gene id AMCG00007519
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21151577 ~ 21159558 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007519
GGACTTTGAAGAGCAGATTGATGTGAAAGACAGATTAATAAAGAAATTACAAAACCAGATCCAGGGCCTGCGGATGCCTGAGAAAGCAAACCACATCCAAGCACCGCTTCTTCCCAAGGAATACCTCGGAATGCTGGAATACAAAAAAGAGGATGAGTTGAagcttattaaaaacattattctaGAAATGAAGCCTAGAGGCGTTGTGGTAAACATGATCCCCGGGCTGCCAGCTCACCTCCTGTTCATGTGTGTGCGATACGCGGACTACCTCAACGACGCCACCAAGCTCAAGTCACTAATGAACGCCATTATAAGCGGCATTAAACAGGTCATCACGGATCACCAAGAGGATTTTGAGACCTTGTCTTTCTGGCTGTCCAATTCCTGCCACATGCTGAACTGCCTGAAGCAGTACAGTGGGGAGGAGGAATTCATGAAACACAACACTGCGAGGCAGAATAAGAATTGTCTGAAGAATTTCGACTTGTCTGAGCACCGGCAGATCTTCAGCGACCTGGCCATTCGCATTCATCATCAATTCACTACAGTCATGGAGAACAACCTAATGCCAATGATAGTGCCTGGCATGCTCGAACACGAGAGTCTTCAGGGCATCTCCAGCATGAAACCCACGGGCTTCCGAAAGCGTTCGTCCAGTATCTACGAAGACACGGAGGTGTACACCATCTCCTCCATCCTCCAGCAGCTGGGCTACTTCCACACGGCCATGTGTCAGCACGGCATGGACCCCGAGCTCATCAAGCAGGCTGTCAAGCAGCTCTTCTACCTCATCGGGGCGGGCGCTTTGAACAGCATATTCCTTCGCAAAGACATGTGCTCCTGTAGGAAGGGAATGCAGATCAGGTGTAACCTTAGCTATCTGGAGGAATGGCTCAAGGAGAAGAACCTGCAGCAAAGCAACGCCATGGACACCATGGAGCCTCTTTCCCAGGCGGCGTGGTTACTCCAGGTCAACAAATCCACAGATGAAGATGCCAAGGAAATCTGCGCCAGATGCTCTGGGCTTTCTGCTGTGCAGATTGTCAAGATTCTCAACTCTTACACACCTATAGATGATTTTGAGAAGAGGGTGTCGCCGTCATTTGTTCGCAAAGTCCAGTCGATATTGCAAGAACGTGAAGGCAATCCTCAATTAATGCTGGATGCCAAATATCGCTTCCAAGTCACATTCCCTTTCAACCCTTCTCCACAAGCCCTGGAGGTGATCCAGGTTCCCAGCAGTCTTAAGCTGGGCTTCCTAACAAGGATATGAACAATAGGAAATACTGATCCTCTGCACATTGCAAATGTGCTGTAATATGTCAATAATGGAGCCCctgttttttataattattttgtgcacaaagaaaaaaaatattttaatcctCAAAGAAGCaggttttaaattgtaaattgtgtgTAAGAGCAAATTGCTTCAGAAGCTGGTACATATGATCATTGAATAgccttttaatgttttgtttttcttcttcagtcaATGTTCCTATGTCTTTAGAGCACTAAGAtcatacaaaaaaagtattttaattatttattttaaaatggcaacacacatttatttcttcCACTGCCTTATTCAAACAAAGTATATTGGTTTTAACATGAACAGAAGGTTAgggcatttttaatttaagggaATGGTTCAGTCATCAAAATAATTTATGTAGAACCTTGCCATTAAACCCAGGTGGCAGAAGTCTTGATCTTCATACTGTCGTAATTATCTCTTTGATTCATTGGTGTAGCTCGTTATTGCTAAACTACTCTTTAGTTGCCATATTTATCACTGCTTTGCACAAGTAGGGAGAGAGGAACTTTGtatgagaaaatgttttttgtaatgattaataTGGGATCTGATCTAGGTCAGTGCTGCTTATAGGGTTAAAAGAGATTTATCTCCTTTAGTTGTGGTTCCactatacaattatttactaTAAAAGCTGTGAATTCTGCTGAATTTCAGTCTGAAATTTACATACATTCTTCTGCACATTTAATAGATACGTATTTTATGCTTTGTTCAAGTTGCACACTTCTGTTATGCACATTTTGTAGTTAGTGTAGCGTAGGTTGAATCATCATTCCATATGTGCCCTGTGTTACAGTTCTAAATGTAAGGTAAACAAGAAATCAAAGTGTGGTTTTAAGATTCGGCAGCATGGAATAGAAAACTGCATCTGTTGCATGGCAAATGTTGtgttaatctgtttttaaagcagCAGTCAAGCAACCACTTTTTTCTGATTGCtacataatttttaaaataaagatgacaCTGCTCTCCATGGGTTCCATATGATCACAATATGATTCTTCTCCCTTGTCACTTAACAGAAAACTCTAaccttcagttttattttgtttttaaatgtcagatattttgattaaaagttgtgttgatttattttcttgtcatataactgtttttcttgtgtaaTAAATTTTACtcagattttatattttgaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007519 True 2495 mRNA 0.41 9 21151577 21159558

Neighbor

gene id symbol gene type direction distance location
AMCG00007518 myo5c coding upstream 5161 21131240 ~ 21146416 (+)
AMCG00007516 myo5aa,myo5a,LOC107746947 coding upstream 25596 21085986 ~ 21125981 (+)
AMCG00007513 fam214a coding upstream 94726 21048919 ~ 21056851 (+)
AMCG00007512 onecut1,LOC107676486,LOC107746960,LOC107712763 coding upstream 142010 21000014 ~ 21009567 (+)
AMCG00007503 rsl24d1,LOC105018348 coding upstream 633458 20513733 ~ 20518119 (+)
AMCG00007515 gnb5,LOC103156493,LOC106947723,LOC106932415 coding downstream 3262 21162820 ~ 21177602 (+)
AMCG00007517 NA coding downstream 21292 21180850 ~ 21186026 (+)
AMCG00007525 tmod3,LOC107588545,LOC107700589,LOC107746940,LOC108264495 coding downstream 121757 21281315 ~ 21282214 (+)
AMCG00007522 LOC102784726 coding downstream 132722 21292280 ~ 21298832 (+)
AMCG00007523 NA coding downstream 152494 21312052 ~ 21320111 (+)
G24311 NA non-coding upstream 270653 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 274792 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 657572 20492904 ~ 20494005 (+)
G24258 NA non-coding upstream 658960 20492396 ~ 20492617 (+)
G24255 NA non-coding upstream 661821 20489297 ~ 20489756 (+)
G24384 NA non-coding downstream 226667 21386225 ~ 21398047 (+)
G24570 NA non-coding downstream 985281 22144839 ~ 22148238 (+)
G24654 NA non-coding downstream 1181178 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 1290549 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 1294258 22453816 ~ 22454055 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 84794 21060159 ~ 21066783 (+)
AMCG00007483 NA other upstream 1200149 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 2095444 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 2136678 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 2581105 18567242 ~ 18570472 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 972015 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 1029687 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 1103962 22263520 ~ 22266409 (+)
G24606 NA other downstream 1122142 22281700 ~ 22282958 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 1974253 23133811 ~ 23139521 (+)

Expression


Co-expression Network