AMCG00007521 (leo1,LOC102793363,LOC106594225)


Basic Information

Item Value
gene id AMCG00007521
gene name leo1,LOC102793363,LOC106594225
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21257578 ~ 21264539 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007521
ATGGGCTCTAACCAGCCACCTCCCATCATCTGGACTTCATTATCAATGTACAAGGACCACGACATCCGCTCGGAACGCCAGCTCCGCTTTCTGGACACGCCGCTCCCTGCAGCCTCGTTCCCGCATTTCACGAGCAGGAAACGAGTACTTCACCCGCCGCGGACTTCCGCTCTGAGGCTGGCTGTGAAAATGGCGGACATGGATGATTTGTTCGGGAGTGATGGCGACAGTGATAACGAGCAGAGAGACTCTGGCTCCGGATCCGGGTCAGGCTCTGACTCTGAGCAGGAGAGGCCTAGGTCTGTGAGTAATGGCTCGGGGAGCGACAGTGAACGGGAGGACCGAAACGACGACGAGGAGGATGGGGAAGGGCAGGAGGCAGGCAAGCCCAGCAACAAGGAGCTGTTTGGAGATGACAGCGAGGAGGAGCATGGCAGCCAACACAGCAGCAGCGAACACCGGTCTGAGAGGTCAGACAACCAGTCGGAGGCCAGCGTCCACTCTGAGCAGGAGGACAACGAGCACTCGGACGTGGACCAGCACAGCGGCTCGGAGGGGcggcaggaggaagaggaggaggacgatGATGAGAGGGGGCACAGGTCTGATGTGGGCAGCCCCCAGTCTGAAGTAGCCAGCCATCGATCTGAGGCGGGGAGTCCCCACTCTGAGGCTCCCAGCCTTCACTCAGAGGTGGCTAGTGCTCACTCTGATGCTGGTAGTGTCCATTCGGAGCCCGCCAGTCCTCACTCCGATGCTGGCAGTGCCCGTTCAGAGGCTGGGAGCCCTCGCTCAGAACCTGGGACTCCCAGATCTGGGCCCACCACCCCCCACTCTGAGGCAGAGGTGTCTGGGAAAGAAGTCCACTCTGAGGATGAGAAGTGGGACATGGAGGCTAAGAGCGACCAGTCAGACGACGAGGAAAAGCCCCAGCATTCAGACGAGGAGCGCGGGCACTCGGACGATGAAGGTGAAGAGCAAGCGCATAAATCAGGCAGTGACAGCGAAGACGACTTTGTCAGACAGAAGCACAAGAAGGCAATTGCATCCGATTCGGACTCGGATAGTGACGCTGGAGGACAAAAAGAAAGCAAACCTGCAGCGGATGACCTGTTTGGAGAAGCCGATGACATTTCCTCAGACAGTGATGCAGAGAAGCCCCCTACTCCAGGACAGCCACTTGATAATGAAGACGGCATGGACACTgagcagcaggaggaagagcCCGTACCTGAGACAAGGATAGAAGTAGAGATTCCCAAAGTCAACACAGATCTGGGAAGTGATCTCTACTTTGTCAAACTGCCTAATTTCCTCAGTGTGGAACCCAGACCTTTTGACCCACAGTACTATGAGGATGAGTTTGAAGATGAGGAGATGTTGGATGAAGAAGGCAGAACCAGGCTAAAACTGAAGGTTGAAAACACAATTCGATGGAAGACACGAAGAGACGAGGAGGGCAGTGAGGTTCGGGAAAGTAATGCACGCATTGTGAAGTGGTCTGATGGGAGCATGTCTTTGCACTTGGGGAATGAAGTGTTTGATGTCTACAAGGCTCCACTACAAGGAGATCACAACCATCTCTTCATCCGACAGGGAACTGGGCTGCAGGGGCAAGCCGTGTTCAAAACCAAGCTCACTTTCAGACCTCACTCTACAGACAGTGCTACTCACAGAAAGATGACCCTGTCCCTAGCTGACCGCTGTTCAAAGACTCAGAAGATCCGGATCTTGCCGATGGCAGGCCGGGACCCGGAGTCGCAGCGTAATGAGATGATTAAGaaagaggaggagagactGCGTGCGTCGATCCGCCGGGAGTCCCAGCAGCGCAGGATGAGGGAGAAGCAGCACCAGCGAGGGCTCAGTGCCAACTACCTGGAGCCGGACCGCtacgaagaggaggaggagggggaggagtcCATTAGCCTGGCTGCCATCAAGAGCAAATACCGGGGGGGCGGCGGGGTGAGAGAGGAGCGGGCCAGGATTTATTCTTCAGACAGCGACGAGGGCTCGGACGATGACAAAGCCCAGAGGCTGCTGAAGGCCAAGAAACTGGACAGTGATGATGAAGGAGTTAGTCCCGGAAAGAGGAAGGctgatgatgaagaagaaacaTCCACAAAGAAGGCCAAGAAATATGTCATTAGTgacgaagaggaggaggacgatGAATAATTTTGTAACAGTCCTATTCTTTTGTCAATTTATCTAGATGTTAGAGATGCttactttttttaatagtattaaatcatttttgtttgtacagCTCAGGTAAATAAACTGATTGAGTcacttatg

Function

symbol description
leo1 Predicted to enable RNA polymerase II C-terminal domain phosphoserine binding activity. Acts upstream of or within several processes, including animal organ development; melanocyte differentiation; and xanthophore differentiation. Located in nucleus. Part of Cdc73/Paf1 complex. Is expressed in brain; eye; immature eye; pharyngeal arch; and somite. Orthologous to human LEO1 (LEO1 homolog, Paf1/RNA polymerase II complex component).

NR:

description
PREDICTED: RNA polymerase-associated protein LEO1

GO: NA

KEGG:

id description
K15177 LEO1; RNA polymerase-associated protein LEO1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007521 True 2304 mRNA 0.54 13 21257578 21264539

Neighbor

gene id symbol gene type direction distance location
AMCG00007520 mapk6,LOC107588533,LOC107747613,LOC107550634,LOC107704268,LOC107746943 coding downstream 33084 21214616 ~ 21224494 (-)
AMCG00007510 unc13c,LOC107712779,LOC108411445,LOC107554226 coding downstream 540436 20713551 ~ 20717142 (-)
AMCG00007511 unc13c,LOC108411445 coding downstream 581244 20648257 ~ 20676334 (-)
AMCG00007508 unc13c,LOC108411445 coding downstream 639416 20606183 ~ 20618162 (-)
AMCG00007507 NA coding downstream 668379 20587572 ~ 20589199 (-)
AMCG00007526 NA coding upstream 57693 21322232 ~ 21335390 (-)
AMCG00007527 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582 coding upstream 89981 21354520 ~ 21357001 (-)
AMCG00007529 NA coding upstream 133147 21397686 ~ 21402540 (-)
AMCG00007530 dmxl2,LOC107700583 coding upstream 160394 21424933 ~ 21453417 (-)
AMCG00007535 myef2 coding upstream 496129 21760668 ~ 21769423 (-)
G24409 NA non-coding downstream 71417 21180921 ~ 21186161 (-)
G24410 NA non-coding downstream 79984 21150274 ~ 21177594 (-)
G24335 NA non-coding downstream 190845 21060260 ~ 21066733 (-)
G24271 rsl24d1,LOC105018348 non-coding downstream 740105 20513786 ~ 20517473 (-)
G24243 NA non-coding downstream 791143 20465253 ~ 20466435 (-)
G24430 NA non-coding upstream 31839 21296378 ~ 21375032 (-)
G24464 NA non-coding upstream 446983 21711522 ~ 21718039 (-)
G24469 NA non-coding upstream 491052 21755591 ~ 21755946 (-)
G24470 NA non-coding upstream 493348 21757887 ~ 21758169 (-)
G24503 NA non-coding upstream 541581 21806120 ~ 21807061 (-)
AMCG00007500 NA other downstream 784659 20462504 ~ 20472919 (-)
G24217 NA other downstream 925767 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 1035574 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 1334425 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 1457826 19791701 ~ 19799752 (-)
AMCG00007565 gatm other upstream 1076060 22340599 ~ 22358446 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 1296957 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 2142389 23406928 ~ 23420303 (-)
G25026 NA other upstream 2707132 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 2998151 24262690 ~ 24281564 (-)

Expression


Co-expression Network