AMCG00007527 (tnfaip8l3,LOC107746937,LOC107588557,LOC107700582)


Basic Information

Item Value
gene id AMCG00007527
gene name tnfaip8l3,LOC107746937,LOC107588557,LOC107700582
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21354520 ~ 21357001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007527
ATGAGGCTGCCTCATAAAGAACAAGGCCAAGAGAGCTTCAATTCCAAAAGCCTGGCTCTCCAGGCCCAGAAGAAGATCTTGAGCAAGATGGCAACGATGGTGGTTGTGAACCTTCTCACGGACGACACCAGCAGCGAGATCCTGGACGAGCTGTACAAAGCAAGCCGGGAGTACACCAAGAACAAGAAGGAAGCCCACAAGATCATGAAGGATGTGATCAAGATCGCCCTGAAGATCGGCATCCTCTACCGCAACAATCAGTTCAgccaggaggagctggagacaGTGGAGAAGTTCAAGAAGAAGATGAACCAGACGGCCATGACCGCGGTGAGCTTCCACGAGGTGGAGTACACTTTCGACCGGAACCTCCTGGCCGAGCTGCTGCTGGAGTGCAAGGACCTGCTGCACGAACTGGTGGAGCACCACTTGACAGCCAAGTCCCATGGTCGCATTGATCATGTGTTCAACCACTTTGCCGATGTGGGCTTTCTCTCTGTGCTTTACAGCTCCTCTGAGGAGTACAGACAATATCTGAAGAAAATCTGTGAAGGGATTAACAAACTACTTGACGAGGGAGTTCTTTAA

Function

symbol description
tnfaip8l3 Predicted to act upstream of or within lipid transport and regulation of apoptotic process. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in pronephric duct and retinal inner nuclear layer. Orthologous to human TNFAIP8L3 (TNF alpha induced protein 8 like 3).

NR:

description
PREDICTED: tumor necrosis factor alpha-induced protein 8-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007527 True 588 mRNA 0.52 2 21354520 21357001

Neighbor

gene id symbol gene type direction distance location
AMCG00007526 NA coding downstream 19130 21322232 ~ 21335390 (-)
AMCG00007521 leo1,LOC102793363,LOC106594225 coding downstream 89981 21257578 ~ 21264539 (-)
AMCG00007520 mapk6,LOC107588533,LOC107747613,LOC107550634,LOC107704268,LOC107746943 coding downstream 130026 21214616 ~ 21224494 (-)
AMCG00007510 unc13c,LOC107712779,LOC108411445,LOC107554226 coding downstream 637378 20713551 ~ 20717142 (-)
AMCG00007511 unc13c,LOC108411445 coding downstream 678186 20648257 ~ 20676334 (-)
AMCG00007529 NA coding upstream 40685 21397686 ~ 21402540 (-)
AMCG00007530 dmxl2,LOC107700583 coding upstream 67932 21424933 ~ 21453417 (-)
AMCG00007535 myef2 coding upstream 403667 21760668 ~ 21769423 (-)
AMCG00007545 fbn1 coding upstream 454479 21811480 ~ 21880303 (-)
AMCG00007544 NA coding upstream 541366 21898367 ~ 21918778 (-)
G24409 NA non-coding downstream 168359 21180921 ~ 21186161 (-)
G24410 NA non-coding downstream 176926 21150274 ~ 21177594 (-)
G24335 NA non-coding downstream 287787 21060260 ~ 21066733 (-)
G24271 rsl24d1,LOC105018348 non-coding downstream 837047 20513786 ~ 20517473 (-)
G24243 NA non-coding downstream 888085 20465253 ~ 20466435 (-)
G24464 NA non-coding upstream 354521 21711522 ~ 21718039 (-)
G24469 NA non-coding upstream 398590 21755591 ~ 21755946 (-)
G24470 NA non-coding upstream 400886 21757887 ~ 21758169 (-)
G24503 NA non-coding upstream 449119 21806120 ~ 21807061 (-)
G24515 NA non-coding upstream 585951 21942952 ~ 21943671 (-)
AMCG00007500 NA other downstream 881601 20462504 ~ 20472919 (-)
G24217 NA other downstream 1022709 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 1132516 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 1431367 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 1554768 19791701 ~ 19799752 (-)
AMCG00007565 gatm other upstream 983598 22340599 ~ 22358446 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 1204495 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 2049927 23406928 ~ 23420303 (-)
G25026 NA other upstream 2614670 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 2905689 24262690 ~ 24281564 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G551496 LOC106562529 non-coding NC_048570.1 CM023224.2 81349323 ~ 81352644 (-)