AMCG00007538


Basic Information

Item Value
gene id AMCG00007538
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21984244 ~ 22007621 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007538
ATGATAGGAGAGCACATTGATTACTGTGGATATGCTGTACTCCCCATGGCTATAGAACAAGATATCCTTGCAGCGGTTTCACTcaataagacacaaacaatccAGCTGGCTAATACAAAACCTTTGTACAAGGATTTCACAGGTTCTGCTGGAGACATTCAGATCGACAAGTCAAAGCCTTTAtggcattattattttctttgtggcCTTAAAGGAATTCAGGAGCATTTTAACCCCTCCACTCCTGCAGGGATTGACTGTGTTGTGGATGGAACAATCCCAGCCAGCTCTGGGCTCTCCAGCTCCAGTGCACTAGTGTGCTGTGCAGGCCTGGTCACGCTGGAAGCCAACAAGAAGAATCTTTCAAAGGTGGAGCTTGCAGAGATCTGTGCACGCTCCGAGCGCTACATCGGCACAGAGGGAGGGGGCATGGACCAGTCCATCTCTTTCCTGGCAGAGCAAGGAACTGCGAAGCTCATAGAATTCAGCCCGCTCCGAGCAACCGACGTTAAACTTCCAGATGGGGCGGTTTTCGTGATTGCTAACTGTTGCGTGGAAATGAACAAGGCTGCGACTTCTCATTTCAACATCAGGGTTGTGGAGTGCCGAATAGCTGCAAAGGCGAAAGGTTTGGAGTGGAGCAGGCCGTTGAAGTTGGGTGATGTTCAGACTGAGCTGGGAGTCTCTCTGGAGGAGATGCTGAGGACTGTGGATGAAGTTCTGCATCCAGAGACATACAGCAAAGAGGAAATCTGCCAGTGCCTAGGCATCACCCCAGAGCAGCTCGGCAGCACCATCCTCAGTGAGAACACCAAGCATGTGACCCAGTTCAAGCTGTACCAAAGGGCAAAACATGTATACAGTGAGGCTGCACGAGTGTTGCAGTTTAAGGATATTTGTGACCAGGCACCTGCTAGAGCAATCCAGCAGCTGGGAGAGCTGATGAAGCAGAGCCATGTGAGCTGTAGAGACCTGTATGAGTGCAGCTGTCTGGAGCTGGATCAGCTGGTGGCCACGTGTCTAGAATCTGGTGCTGTTGGTTCCAGGCTGACTGGAGCTGGCTGGGGAGGGTGCACGGTGTCAATGGTACCGAACGACAAGCTGGATTCCTTCCTGCAGAGTGTCCGTGACTCCTATTACAAGCCTGATGCTCGGAGAGCAGCAATGGAGAAGCAAAGTTTATTCGTCACAAAGCCTGGTAGAGGGGCATGCATCTTTTTAGAGGCCTAG

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006012 galactose metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004335 galactokinase activity molecular_function

KEGG:

id description
K18674 GALK2; N-acetylgalactosamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007538 True 1230 mRNA 0.51 9 21984244 22007621

Neighbor

gene id symbol gene type direction distance location
AMCG00007532 dut coding upstream 177187 21803173 ~ 21807057 (+)
AMCG00007534 NA coding upstream 183592 21781383 ~ 21800652 (+)
AMCG00007533 LOC108412301 coding upstream 224061 21755790 ~ 21760183 (+)
AMCG00007531 sema6d,LOC107557846 coding upstream 266218 21699051 ~ 21718026 (+)
AMCG00007528 NA coding upstream 544958 21400786 ~ 21439286 (+)
AMCG00007536 fgf7 coding downstream 25621 22033242 ~ 22033908 (+)
AMCG00007537 NA coding downstream 42660 22050281 ~ 22052621 (+)
AMCG00007548 NA coding downstream 116026 22123647 ~ 22129477 (+)
AMCG00007546 bloc1s6 coding downstream 146056 22153677 ~ 22158549 (+)
AMCG00007549 sqrdl,LOC102778185,LOC103363827 coding downstream 154583 22162204 ~ 22174755 (+)
G24384 NA non-coding upstream 586197 21386225 ~ 21398047 (+)
G24311 NA non-coding upstream 1103320 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 1107459 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 1490239 20492904 ~ 20494005 (+)
G24258 NA non-coding upstream 1491627 20492396 ~ 20492617 (+)
G24570 NA non-coding downstream 137218 22144839 ~ 22148238 (+)
G24654 NA non-coding downstream 333115 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 442486 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 446195 22453816 ~ 22454055 (+)
G24695 NA non-coding downstream 447645 22455266 ~ 22456761 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 917461 21060159 ~ 21066783 (+)
AMCG00007483 NA other upstream 2032816 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 2928111 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 2969345 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 3413772 18567242 ~ 18570472 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 123952 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 181624 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 255899 22263520 ~ 22266409 (+)
G24606 NA other downstream 274079 22281700 ~ 22282958 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 1126190 23133811 ~ 23139521 (+)

Expression


Co-expression Network