AMCG00007543 (nnt2,LOC108412674,LOC107381730,LOC103379093,LOC106934392,LOC102222601)


Basic Information

Item Value
gene id AMCG00007543
gene name nnt2,LOC108412674,LOC107381730,LOC103379093,LOC106934392,LOC102222601
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22049753 ~ 22068693 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007543
CCTCAGGCAAACCTGTGCCAGTTTTCCTAAGCATTAGATGTCCTTCGCGTCACATGATCCCCTATTTATAGCAGATAAACTAAAGCTGTACTATTGAAACTCCCGAGGTGGCAACGTGAAGGTCATGGTTCCcataaaattatgtaaaagctAACTTGTTCCCCTAAGAACAATTTGAATTGGGTGTCGAGGCGCAAGACCCAGGACACCTGGACTAAGAGCAACAGGCTGTCTTGGGAGTCATGGCTTGTCTCCTACGCGGTGTCACCAATTGCTCTGTGCCCTTGCTCCACCAAGGAGTGCTGCAAAAGACATCTGGGAAAAGATATTTTAGGACATTTCGCATCTTATGGAACCAACAGACATCTAAAGGAGAGGTCACTTAAAGGTGAAGTCACTCTCTTAGTTCAGCTCCCTGGGAAAACTAACCACACAGGGGTTCTCTACAAAGATGTCCTTGTCGGTGTCCCGAAGGAGATTGCAAAGAACGAGAAGAGGGTGGCGTTGTCCCCAGCTGGTGTCCAGGCTCTGGTTAAGCAGGGCTTCGCTGTGCAGGTGGAGAGGGGGGCCGGAGATGAGGCCAAGTTCTCAGATGACCAATACAAAGAAGCGGGTGCCAAGATAGCAGACACAAAATCTGTGTTTGGCTCAGACCTGGTTCTGAAGGCAATTTGCTTTTTCCAGGTAAGAGCACCgacatttaataatgcattggGAACACATGAAGCTGAACTGCTGAAACCAAAAGCCACCCTAGTGAGCTTTATCTACCCAGCTCAAAACCCTGACCTTATGGACAAGCTCTCCAAGCAGAAGGCCACTGTCCTCGCGATGGACCAGGTCCCTAGAGTCACCATAGCTCAGGGGTACGATGCGTTGAGCTCCATGGCTAACATAGCAGGGTACAAGGCCGTTGTACTGGCAGCCAATCATTTTGGACGATTTTTCACTGGCCAAATTACAGCGGCTGGGAAAGTGCCTCCAGCCAAGGTTCTCATAATCGGGGGAGGTGTGGCTGGACTTGCTGCTGCAGGGACTGCCAAATCCATGGGAGCCATTGTCAGAGGATTTGACACAAGGCCTGCAGCTCTGGAGCAGTTCAAGTCTTTTGGTGTGGAGCCACTAGAGGTGGATGTGGCAGAGCATGGGGAGGGCGTGGGGGGCTACGCTAAAGAGATGTCTAAGGAGTTTATAGAGGCAGAGATGGCCCTGTTTGCTAAGCAGTGCAAGGAAGTGGATATCCTCGTCAGCACTGCACTCATTCCAGGAAAGACAGCTCCCATCCTCATAAAGACAGACATGGTGGAGTCCATGAAGGATGGTTCAGTGGTGGTGGATCTTGCTGCTGAGGCTGGGGGGAATATAGAGACCACCAGGCCAGGAGAGCTGTATGTCCACAAGGGAGTTACACACATTGGATACACTGACCTGCCCAGCAGAATGCCCAGTCAGTCCAGTACTCTGTATTCTAACAATGTGTTGAAGCTGCTTAAAGCCATAAGTCCTGATAAGGAATATTTCTATTTTGAGCCTAAAGAGGAGTTTGATTATGGAACAGTTGACCATGTTATTCGGGGCACCATGGTAATGCAAGAAGGCAAGAACCTTTTCCCAGCTCCTTTACCAAAAACcgtccccccacctccccctgcTAAACACAAGTCGTTGGCAGAATTAGAGGCAGAGAAACAGGCAGAGGTCTCCCCCTTCAGGAAAACAGTTAACTCCGCCAGTGTCTACACAGCAGGTCTCTCCGGAGTCCTGGGCCTGGGCATCATTTCTCCCAACGCGGCCTTCACCCAGATGGTTACCACCTTTGGGTTGGCTGGAATCGTTGGATACCACACGGTCTGGGGAGTCACACCAGCCTTACATTCTCCACTGATGTCAGTCACAAATGCTATTTCAGGTCTCACGGCGGTGGGGGGTCTGGTGCTGATGGGTGGAAGTTACACCCCCTCCAGTCTCCCTGAGTCCCTGGCACTGCTCGCTGCCTTCGTCTCCTCCATTAACATTGCAGGTGGCTTTCTGATCACACAGAGGATGCTGGACATGTTCAAACGGCCAACAGATCCCCCAGAACACAACTACTTGTATGTGTTGCCTGGAGCTGTATTTGTTGGTGGATACGGTGCTTCTCTTGCCAGTGGATACAGTATTGAACAGatGATGTACCTGGGCTCTGGGATGTGTTGTGTTGGGGCCCTGGCAGGCCTGTCCGCTCAGAGTACCTCCAGACTGGGGAACGCCCTGGGAATGATTGGGGTGGCCGGGGGCATCGCTGCTACACTGGGGGCCCTCAAGCCCTCCCCTGAGCTACTCTCACAGATGTCAATGGCTATGGCAACTGGTGGCACCATAGGTCTGACCATTGCCAAGCGCATTGAGATCTCTGACCTGCCCCAGCTGGTTGCTGCTTTTCACAGTCTGGTGGGCCTGGCGGCAGTGCTCACCTGCGTTGCGGAGTACATGATTGAATACCCTCACTTGGATGCCCACCCTGCAGCTAATGTGGTTAAAACCGTGGCGTACCTGGGAACATACATTGGGGGAGTGCTGGACTCGGCTCCCCTGATGTTGCCAGGCCGTCACTACCTCAACGCTGGCCTGCTGGCAGCCTCAGTGGGCGGCATAGGCGTGACTCTGACTGCAGCTATCGGAGGAGCTGACATGCCTGTGGTCATTACGGTTCTCAACAGTTATTCTGGCTGGGCCCTGTGTGCTGAGGGCTTCCTGCTGGACAACAATCTGATGACAATTGTGGGGGCACTGATTGGGTCCTCTGGTGCCATCCTCTCCTACATAATGTGTGTGGCCATGAATCGGTCACTCCTTAACGTGATTTTGGGTGGATATGGAACATCATCCACTGGCACAGGGAAGCCAATGGAGATTGTGGGAACCCACACGGAAGTCAATGTGGACCAGTCCATTGAAATGATCAAGGAGGCCAGCTCAATCATCATCACACCAGgCTGGGGTCTCTGTGCAGCCAAAGCTCAGTACCCCATTGCCGACATGGTTAAAATGCTGCGGGAACAGGGCAAAACCATCAGGTTTGGCATTCATCCGGTTGCTGGTCGCATGCCTGGGCAGCTCAATGTGCTTCTTGCTGAGGCTGGAGTTCCTTATGATGTGGTACTGGAAATGGATGAGATTAATGAGGACTTCCCAGAAACCGACCTGACGCTGGTTATTGGTGCGAATGACACAGTAAACTCTGCAGCACAGGAAGATCCCAACTCTATCATTGCAGGGATGCCAGTACTAGAAGTCTGGAAATCAAAACAGGTCATTGTCATGAAGCGTACCCTGGGAGTGGGCTATGCTGCTGTTGACAATCCCATTTTCTATAAGCCCAACACGGCAATGCTGCTGGGAGATGCCAAGAAAACCTGTGACGCTTTACAGGCTAAAATCAGAGAAACCTTCTATACCAACTAGTGTTATCCTGCACCTTGTTTTGTCCCCCATTTAATCAAATACACTTATACAGTTAAATGACTTACAATCATGAAGAGTTGGCCTGCTATATGGATTTGAttgaatatgcattttttaaacataatctTCTATGTCAAATACAGTTCTTATGTCTCAAGTCAATAATAAGTGAATGAAAAGGTAAATGGCTGGGGCTTCAATCTGAAGGGGGCGAAGATGTGGGGTCGAATTTAAGGCAATGCAAATAAGAGTTTTGAAAACcatgattaaaaacaattacgAGACTAATTGTCATAATCCGTCCAATGGCATGTActgatatgtaaataataaagtcTATTTAAGTGGCAAAAATGTTTACTTAATGATGAATACAGTAAACATATCACAATTAGATTAAAATAGATTTAGAAATAACCATGATCCGAATAATGCTTTCATTGattttgtataaaacatatgtAGGCACAGATGATCTCATGAAATGTGGTATGAGGTGACATGTTTCTCGTAACTATGGAGTTCTACATAGGGAACAGATTTtgccattaataaataatgtattggacAGACATTACTTTTTCATATATTAAACTTTTTCCCCATACTTAATATGGAAAATAGTACAGTTCTTAATTTCTTgggtctttattttaaacaaataactaaattaaatccaaaacagGTTTTTTTTGCAGTACATAATATAGCAATCATTATCACAACTGTTTTTCATATGGAAAACATAGTGTGAGAAAAACTAGCATGTGAATGAATGCTCATGTTGAAACAATCTCTTCACCTTTATAATGTTCGTCATCTAGTATGAATACAGAAGAAATGAACTGTTGAATGTGTAGATTACATAACAAACTAAACCGCAGACAGCTGGGAAGAACATCTCGTTGGCTTTCAGATTCCTTGCTCACAGTTTCCCAGCAGTGTGCTTTGCTTTGTTGATCAGCTTGTACAAGAATGAGTAGAAGAAGAGCAGATTGTCATACTCTCCCAGGTACTCTGGAGATAAACACAGTTCAGTATAGTCTCTCAGGAAATAGTAGATGGCCTCTATTGTGGAGAGGTAAGTGTCCGGAGTTCCCTTCTGGTGACGCCAGAAACAGGTCTTCCTGGTTTTCAGTTCAACCTGAGGCAAGGCTTGAAGCCGTTCATCAGTGATAATTTTGTTTGTCTGGTTCCAAGTGCTATCGATAAACAATATTCTCTTTAACGGACTGCTTTTCTCCTGCTCAGTTGGTTGGTTTGAAGATGATTTTCCATCTTCTGGCTTGCTCTCACACTTCATTCTCTTCACTGCTGGCTCATCTGTTGAGGTATCCCGAGCTCTCTTTGCAGCGGCTACAAGCTGTTCTGTTAACTCTTCAATCGTTAGTGAACCTGGACCTGGGAAAACTAATGCAACCtacagtgtttttcatcCTCATAATCAGGGATGCAAGGGTAAGTGTAGATGGTAACGTCATCTGGGGCTATGAGTTTAGCATGCACTGCAGTGCTCTTGCCGTCCGTTTCGTTTGGGTGTTTGATAATATCAATCTTCAGAGgaagCTTGATTTGGGGGATTTCCTCCTGACTCACACCTACTAAAGAGAAACACGTGTAGCAATAGAACATCCTTGAACCGCTGCATTTACCGCATTTCAATCTGCCTCTCAGCTGTGCGCGGTGCAGCACTGCGTGGGATGCCAACTTCAGGCCCTGCAGAGGCTCCGCGGCGGCATCACACCGTGCCTTTGCCCGGGTCCGACTATCCGGAGCGATCAAACACGTCAATTTCTCCCGACTGCACACATCAGCACATTTCGTTAAATCTCCGGCATCAGCGGGCTTAGACGCCATCTCACAATTCACCTGTTCAAAAACGTGcaaataacactttttaattCGTACTGGGTTTATATTTTCACTACTCAAtcggttacattttttttaatcacattaaagACTAGCTGTCaatgtttaatatgaaaattaGGTCAACTGCATAGAAATCGTCTTTATTAAGTATTTCACTTATTCTACAGGTGGAAGTAAGAGTTAAAGGATGTGTCGATAGCGAATAGCCTGCTAAAATGTCAGCGTGCTTTTTACGCTTACGTTATTTCCTATGTACTCTTAACTTGCCTGAGCAATTTAGTTACCTCTCTCACCTACTTACTAGGCACATGTATCAATGTTACATTCGACTTTCTAAGTGAAAGGTCGAGATCAATGTATCACTCCGTAAAAATACTGTTACTTTATTTCTAAAAAGGAAAGGATACATCactaggaaagaaaaaaaaaccacGATTGTAATTAATAAAGCAAGACTAACACGTTTAACGAAAACGTTAACGAGAATATCCTGCTCCTTCTAGATGCCGG

Function

symbol description
nnt2 Predicted to enable NAD binding activity; NAD(P)+ transhydrogenase activity; and NADP binding activity. Predicted to be involved in NADPH regeneration. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial glucocorticoid deficiency. Orthologous to human NNT (nicotinamide nucleotide transhydrogenase).

NR:

description
PREDICTED: NAD(P) transhydrogenase, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008750 NAD(P)+ transhydrogenase (AB-specific) activity molecular_function
GO:0050661 NADP binding molecular_function

KEGG:

id description
K00324 pntA; H+-translocating NAD(P) transhydrogenase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007543 True 5829 mRNA 0.46 26 22049753 22068693

Neighbor

gene id symbol gene type direction distance location
AMCG00007542 NA coding downstream 1388 22042455 ~ 22048365 (-)
AMCG00007541 cops2,LOC107557994,LOC107589327 coding downstream 67832 21976293 ~ 21981921 (-)
AMCG00007539 LOC106587774 coding downstream 75895 21952685 ~ 21973858 (-)
AMCG00007540 NA coding downstream 106828 21925949 ~ 21942925 (-)
AMCG00007544 NA coding downstream 130975 21898367 ~ 21918778 (-)
AMCG00007551 atp8b4,LOC107688930,LOC107712521 coding upstream 949 22069642 ~ 22118102 (-)
AMCG00007550 NA coding upstream 76056 22144749 ~ 22153500 (-)
AMCG00007552 LOC100693649,LOC108251187,LOC102204817,LOC101075467,LOC105022653 coding upstream 108773 22177466 ~ 22181121 (-)
AMCG00007558 usp8,LOC102785891 coding upstream 207418 22276111 ~ 22288236 (-)
AMCG00007566 NA coding upstream 263373 22332066 ~ 22337074 (-)
G24551 NA non-coding downstream 40320 22005734 ~ 22009433 (-)
G24515 NA non-coding downstream 106082 21942952 ~ 21943671 (-)
G24503 NA non-coding downstream 242692 21806120 ~ 21807061 (-)
G24470 NA non-coding downstream 291584 21757887 ~ 21758169 (-)
G24469 NA non-coding downstream 293807 21755591 ~ 21755946 (-)
G24579 NA non-coding upstream 62696 22131389 ~ 22133981 (-)
G24640 NA non-coding upstream 192154 22260847 ~ 22262493 (-)
G24687 NA non-coding upstream 363374 22432067 ~ 22432313 (-)
G24705 LOC105889120 non-coding upstream 377677 22446370 ~ 22448954 (-)
G24721 NA non-coding upstream 449729 22518422 ~ 22521084 (-)
AMCG00007500 NA other downstream 1576834 20462504 ~ 20472919 (-)
G24217 NA other downstream 1717942 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 1827749 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 2126600 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 2250001 19791701 ~ 19799752 (-)
AMCG00007565 gatm other upstream 271906 22340599 ~ 22358446 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 492803 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 1338235 23406928 ~ 23420303 (-)
G25026 NA other upstream 1902978 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 2193997 24262690 ~ 24281564 (-)

Expression


Co-expression Network