AMCG00007546 (bloc1s6)


Basic Information

Item Value
gene id AMCG00007546
gene name bloc1s6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22153677 ~ 22158549 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007546
ATGCAGACGAGCTGCAAGTTTCTGTCTTCAAGCGTCTTGCTGGTGAAGTGTGGCGTGGAAATAGAGGCAGTGGTACAGGCTTCAGCAGGGTGTCTTGTTCGTGTTTGAGGCTTTAAACAATAACGAGTTTAAACgaggcttttattttattttattttattttatgtttctctttATATAAGAGCTAGTGGCGTCAGTTTTACGCCCCACACAAGTGTAAATTAGACATACTGTAAAGATTAACGAACGACAGCGTAAACAGACAGCTGTCAAACAAAACGGTTCAGGCGTTTCTTTATCATATGACCAGCTCTACCGATTTATGAGCCACAGTGATTTATAATTACTTTGCGTTTTAATGCAGACGGTTTGGAAGACAGATACCTTAATAGAAGGTAGGCCTAAATGTTGACCTGGTGTcttaaaaacaaagttattttgtgtgaagtatataataattttattgttAGTCCCAACGCAAATAAGAATATATTGTGGATTTATGGCGTGAGTACagttgtaaatagtttaatgtatAACTGTCCATCAATTTTAAAAAAGGCTCTAACAGCTGAGCCAAAGATGTTATACCTGTAAATGTGCAATTTGGTAGTTTGTAGGCGGGGGTTTTCCAGTCCGTACAAGCAGTTTATTGTGCGCTGTTATGTGTTTTATCTGTACATTGTCTGTAAACAGTCGAGGAGTCACATGAGTGGAGTTTGAGTCACATGCGTGTTGTTTTAATGTGGATGTGTAACAGTCGTGGTTTATGGGAATAGGCCGCAGTCTGGTTTCTTGCTTCGTTAGTGCTCGGAACAATTCGTCTCTGAAGTGTGGTAGATATAATCTGAGATTTATCACATCGTCCTCCTATATTGATCTGTGGATTAGTATTACGCAAATTATTTATAACTCTTGATTTAATCGTTAGACTTTCTGTTAATTTCACGTACATTTTAGAACTgtgtaatgcatttgtttacGTTCCGGGCACGCAACATATGAATGCGGTTATATCCTATAAACCAAGAACGCAAGAAATGTGTGATACCTCCTAGCATTTCCTGGTTAGTGATCATAGCTGATGTTATGATACAATCCGAAGAAATTGTCTATGAAGGAACTTGTGGAATTTcttctaatttaaaaaaggttaatgtttcaattatatttatatactgtacatgtaaGATGCTTAACCCTTTCATTGTGCGCACTGCAGATTTCGTGTTTGCTTTACCACAGTCAGTGTTTAATTTAAGATTCGCTTTTTACAGTTCCAAAATATTAGTTTGGATGTGGATTTCTGAAGACGTTATTAAGTACATCCTAGAAAgagtttaatgtaaattatacacTGTATAATACAGTAAGGACGCAGAGGTATAGTCAGTGCAGAATTTAATTAACCCGGGATACGCAATAATAAGACATGTATTTGAACAAACTCGATACATTAAATGCTAATGACGTCGTTCACATACAATGTAATCCACATTGTcattcaattataaaacaaatacaaatcgggaagttgtgtgtgtctgttgatGTAAATACGTATTTATGTAATATGCACACACCCTATATCCTAATTATATTGCATTCTAACAGGCAAGTATATCCAAATAAAAAGACAAGCATGTATGctatataatgtgttttaattgacattgccgtttttaattaaataacaagttGGTGGATATGTTCAATACACTATTATATTGTGGAGCAAAAACACAGctaaatgtatgtaatgaaCTCCTTTGTAAAGTCTTGTGCATGTCTGATACATTGGCAACAAATGAACAATGTAGCTCTACCTGCATTCCTTTGCTTTATTTAAGTGGGGAGCCCTTTGTGTCACTGAGTGCGGATTGTAATGGATCCAGAGGAGACAGATGTGCTGCCCTCACCCCAGGCTTCCCCCCTGCACAACAGCGGATCTATagAGTCAAATATAGTGTCTCCAGAATCCAGTGTCTCTGAGGAGCCAGTGTTTGTGGATAAGGCAGCTGTTGGGAAGCTGACTGATGGACTTATCTCTCATTATTTGCCCGACCTACAGAATTCAAAGCAGGCGCTGCAGGAGCTGACACAAAATCAAGTGATATTACTAGACACGCTTGAACAAGAAATCACTAAATTTCGCGAGTGCAATTCTTCACTTGATATAAATTCACTGtttacaGAAGCAAAATACTATcacaataaattagtaaatataAGAAAAGAAATGATGATGCTTCACGAAAAGACAACAAAACTCAAGAAAAGAGCTTTGAAACTTCAACAGCAGAGGCAAAAAGAAGCTCTGGAAAAAGAGCAACAGCGGGAGAAGgagcttgagagagagaggcagctaATTGCAAAACCTGCCAAGCGGACTTAGACCTGGACAGTACCTTTAGAGAAGCTGAAACAGTCTCAGTGACAGGCAGCAGCTGAAGAGCTTACCAAAGACAGTGTCTGTGGTGCCACAGTGGAACAGGTACAATTTGTGCTTGGCAAAAAGGATTTCCCACTGCTTCTGAATGCCAGCAAGTAATACCTGTGTCGGCATTACTGAAAGACAAACTCTAAACAGTATTAAACTGTCTTTCTTTGGTCATGTTTTTGAATCAACTTATAGTCTTCGATGATAATTATTGAGCTGGCTTGTGCTTTCTTGCCTTGTGCAGAGGTTTCTCTGATATGTATAATGGAACCGCCCTTTGAAGAGTCCGAATCTGTGGCCCATTGTAAATGCAGTGTGCTGAGTGGACAGAAAGCAGCTCACTGGCCCTGCTGCTGTGGTTGGTCAGCACAGCTTTCACAGAGATACAGGGCAGACAGGGTTtcatatggaaaaataaaatgaattttgtTGTTTAATGGTGTTAATCTGaccacttattatttattttcaatttgtattggtTACCATGTACTTTTTGGCAGATACTTAGGCTACTTGATTTCAGTTGTTGAATGTATcagttacaatgtttttaagaTCATCGTTGCCTTTTAAATATTGTCGCATTTTGTTATTAGCAACAGGTGTTTCGATATTTTTCTTGTCAGGTTTTCTtcaaacataatacatattttgatttcatgcaAGATTTATAAggttatatcattttttttaatgtcagttaCATTGATCTTTAagtatttgcattgttttaatactACATCAAAGTATTTCAAGTGCAGTcttaaagtattacaaaattaagtaaatcaCTGGTGAAATCTGCTGTTTAAATGGTATGAATCCCTTACATTCTATATCTTCTACTGCAAATTGTTCAACAGATATCTTTGTAATATTTCTGTACTAATTGCAATGCCACACCAATGCTGTAGCAAACATTAATTGCAGTCTAAATAAaatcttttcatgttttctaaCTCAA

Function

symbol description
bloc1s6 Predicted to be involved in intracellular transport. Predicted to be located in cytoplasm. Predicted to be part of BLOC-1 complex. Predicted to be active in transport vesicle. Predicted to be extrinsic component of membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome 9. Orthologous to human BLOC1S6 (biogenesis of lysosomal organelles complex 1 subunit 6).

NR:

description
PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6

GO: NA

KEGG:

id description
K20188 BLOC1S6; biogenesis of lysosome-related organelles complex 1 subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007546 True 3407 mRNA 0.37 5 22153677 22158549

Neighbor

gene id symbol gene type direction distance location
AMCG00007548 NA coding upstream 24200 22123647 ~ 22129477 (+)
AMCG00007537 NA coding upstream 101056 22050281 ~ 22052621 (+)
AMCG00007536 fgf7 coding upstream 119769 22033242 ~ 22033908 (+)
AMCG00007538 NA coding upstream 146056 21984244 ~ 22007621 (+)
AMCG00007532 dut coding upstream 346620 21803173 ~ 21807057 (+)
AMCG00007549 sqrdl,LOC102778185,LOC103363827 coding downstream 3655 22162204 ~ 22174755 (+)
AMCG00007555 NA coding downstream 46227 22204776 ~ 22216240 (+)
AMCG00007557 trpm7 coding downstream 73978 22232527 ~ 22261853 (+)
AMCG00007556 NA coding downstream 109965 22268514 ~ 22274179 (+)
AMCG00007560 gabpb1 coding downstream 137505 22296054 ~ 22307259 (+)
G24570 NA non-coding upstream 5439 22144839 ~ 22148238 (+)
G24384 NA non-coding upstream 755630 21386225 ~ 21398047 (+)
G24311 NA non-coding upstream 1272753 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 1276892 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 1659672 20492904 ~ 20494005 (+)
G24654 NA non-coding downstream 182187 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 291558 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 295267 22453816 ~ 22454055 (+)
G24695 NA non-coding downstream 296717 22455266 ~ 22456761 (+)
G24698 NA non-coding downstream 300471 22459020 ~ 22459517 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 18963 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1086894 21060159 ~ 21066783 (+)
AMCG00007483 NA other upstream 2202249 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 3097544 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 3138778 19007550 ~ 19014899 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 30696 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 104971 22263520 ~ 22266409 (+)
G24606 NA other downstream 123151 22281700 ~ 22282958 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 975262 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 1030911 23189460 ~ 23193521 (+)

Expression


Co-expression Network